Literature DB >> 22265574

Can computational biology improve the phylogenetic analysis of insulin?

Chiranjib Chakraborty1, Sanjiban S Roy, Minna J Hsu, Govindasamy Agoramoorthy.   

Abstract

Using computational biology, we have depicted the insulin phylogenetics. We have also analyzed the sequence alignment and sequence logos formation for both the insulin chain A and B for three groups namely, the mammalian group, vertebrates group and fish group. We have also analyzed cladograms of insulin for the mammalian group. In accordance with that path lengths, matrix for distance analysis, matching representation of nodes of the cladogram and dissimilarity between two nodes have been performed for both of the A and B chains of the mammalian group. Our results show that 12 amino acid residues (GlyA1, IleA2, ValA3, TyrA19, CysA20, AsnA21, LeuB6, GlyB8, LeuB11, ValB12, GlyB23 and PheB24) are highly conserved for all groups and among them some (GlyA1, IleA2, ValA3);(TyrA19, CysA20, AsnA21) are continuous. This study shows a rapid method to calculate the amino acid sequences in terms of evolutionary conservation rates as well as molecular phylogenetics.
Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

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Year:  2012        PMID: 22265574     DOI: 10.1016/j.cmpb.2011.12.001

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  4 in total

1.  Does computational biology help us to understand the molecular phylogenetics and evolution of cluster of differentiation (CD) proteins?

Authors:  Chiranjib Chakraborty; C George Priya Doss; Ritu Sharma; Subrata Sahana; Thumpi S Nair
Journal:  Protein J       Date:  2013-02       Impact factor: 2.371

2.  Understanding the molecular evolution of tiger diversity through DNA barcoding marker ND4 and NADH dehydrogenase complex using computational biology.

Authors:  Chiranjib Chakraborty; Ashish Ranjan Sharma; Garima Sharma; Manojit Bhattacharya; Bidhan C Patra; Bimal Kumar Sarkar; Saptarshi Banerjee; Kankana Banerjee; Sang-Soo Lee
Journal:  Genes Genomics       Date:  2021-04-21       Impact factor: 1.839

3.  Understanding the conservation patterns and molecular phylogenetics of human death receptors family through computational biology.

Authors:  Jinny Tomar; Chiranjib Chakraborty; C George Priya Doss; V K Gera
Journal:  3 Biotech       Date:  2013-05-25       Impact factor: 2.406

4.  Computational biophysical, biochemical, and evolutionary signature of human R-spondin family proteins, the member of canonical Wnt/β-catenin signaling pathway.

Authors:  Ashish Ranjan Sharma; Chiranjib Chakraborty; Sang-Soo Lee; Garima Sharma; Jeong Kyo Yoon; C George Priya Doss; Dong-Keun Song; Ju-Suk Nam
Journal:  Biomed Res Int       Date:  2014-09-08       Impact factor: 3.411

  4 in total

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