Literature DB >> 23344551

Does computational biology help us to understand the molecular phylogenetics and evolution of cluster of differentiation (CD) proteins?

Chiranjib Chakraborty1, C George Priya Doss, Ritu Sharma, Subrata Sahana, Thumpi S Nair.   

Abstract

Cluster of differentiation (CD) is a group of proteins with highly immunological and medical importance, and some are established therapeutics. These membrane proteins are used to investigate of cell surface molecules of blood cells especially WBC. We selected a population of fifteen members with most medical importance, which includes CD2, CD4, CD5, CD6, CD7, CD9, CD14, CD16, CD19, CD22, CD28, CD33, CD36, CD38, and CD44 and performed in silico analysis using algorithm analysis and mathematical models. The results suggest that LEU (L) is well aligned. CD16 is rooted with CD22 and likewise, CD4 is closely related to CD44. Notably, highest number of highly conserved amino acids is recorded in CD22. WebLogo were formed up to 350 amino acid position and Met (M) is found to be tallest logo. Our results would be useful for upcoming researchers to obtain fundamental idea about the particular regions CD proteins which is having the structural and functional significance related to the evolutionary biology.

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Year:  2013        PMID: 23344551     DOI: 10.1007/s10930-013-9466-5

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  40 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

Review 2.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

Review 3.  The proteome: structure, function and evolution.

Authors:  Keiran Fleming; Lawrence A Kelley; Suhail A Islam; Robert M MacCallum; Arne Muller; Florencio Pazos; Michael J E Sternberg
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

4.  CD molecules 2006--human cell differentiation molecules.

Authors:  Heddy Zola; Bernadette Swart; Alison Banham; Simon Barry; Alice Beare; Armand Bensussan; Laurence Boumsell; Chris D Buckley; Hans-Jörg Bühring; Georgina Clark; Pablo Engel; David Fox; Bo-Quan Jin; Peter J Macardle; Fabio Malavasi; David Mason; Hannes Stockinger; Xifeng Yang
Journal:  J Immunol Methods       Date:  2006-12-04       Impact factor: 2.303

5.  CD9 is critical for cutaneous wound healing through JNK signaling.

Authors:  Jiaping Zhang; Jianda Dong; Hua Gu; Sidney Yu; Xiaohu Zhang; Yulin Gou; Wenming Xu; Andrew Burd; Lin Huang; Kenji Miyado; Yuesheng Huang; Hsiao Chang Chan
Journal:  J Invest Dermatol       Date:  2011-09-01       Impact factor: 8.551

6.  Siglecs: a family of sialic-acid binding lectins.

Authors:  P R Crocker; E A Clark; M Filbin; S Gordon; Y Jones; J H Kehrl; S Kelm; N Le Douarin; L Powell; J Roder; R L Schnaar; D C Sgroi; K Stamenkovic; R Schauer; M Schachner; T K van den Berg; P A van der Merwe; S M Watt; A Varki
Journal:  Glycobiology       Date:  1998-02       Impact factor: 4.313

7.  Signal transduction by CD28 costimulatory receptor on T cells. B7-1 and B7-2 regulation of tyrosine kinase adaptor molecules.

Authors:  J A Nunès; A Truneh; D Olive; D A Cantrell
Journal:  J Biol Chem       Date:  1996-01-19       Impact factor: 5.157

8.  CD36 is a receptor for oxidized low density lipoprotein.

Authors:  G Endemann; L W Stanton; K S Madden; C M Bryant; R T White; A A Protter
Journal:  J Biol Chem       Date:  1993-06-05       Impact factor: 5.157

Review 9.  Signal transduction in T helper cells: CD4 coreceptors exert complex regulatory effects on T cell activation and function.

Authors:  Rolf König; Wenhong Zhou
Journal:  Curr Issues Mol Biol       Date:  2004-01       Impact factor: 2.081

10.  Conservation genetics as applied evolution: from genetic pattern to evolutionary process.

Authors:  Robert G Latta
Journal:  Evol Appl       Date:  2008-02       Impact factor: 5.183

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