Literature DB >> 22259593

2-(5-Fluoro-2,3-dioxoindolin-1-yl)ethyl 4-methyl-piperazine-1-carbodithio-ate.

Yao Wang1, Hui-Hui Lin, Sheng-Li Cao.   

Abstract

In the title compound, C(16)H(18)FN(3)O(2)S(2), the methyl-piperazine ring adopts a chair conformation, while the (2,3-dioxoindolin-1-yl)ethyl unit is linked to one of the N atoms of the piperazine ring via the carbodithio-ate group. In the crystal, each mol-ecule is linked to its neighbors within the ([Formula: see text]03) plane through weak C-H(methyl-ene)⋯O, C-H(ar-yl)⋯O and C-H(methyl-ene)⋯S inter-actions. Perpendicular to this plane mol-ecules are connected through inter-molecular short N⋯π(pyrrole ring) contacts [NC centroid = 3.232 (2) Å], another set of C-H(methyl-ene)⋯O inter-actions and through short contacts between carbodithio-ate S atoms and the pyrrole rings [Ccentroid = 3.695 (3), S⋯centroid = 3.403 (2) Å].

Entities:  

Year:  2011        PMID: 22259593      PMCID: PMC3254445          DOI: 10.1107/S1600536811052494

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to indoline-2,3-dione and its derivatives, see: Bhattacharya & Chakrabarti (1998 ▶); Sridhar & Ramesh (2001 ▶); Medvedev et al. (1996 ▶) and to dithio­carbamates, see: Ozkirimli et al. (2005 ▶); Cao et al. (2005 ▶); Gaspari et al. (2006 ▶). For analogues of 5-fluoro­indoline-2,3-dione, see: Wang et al. (2010 ▶). For N⋯π contacts, see: Black et al. (2007 ▶). For van der Waals radii, see Bondi (1964 ▶). For the thickness of phenyl rings, see: Malone et al. (1997 ▶). For C=O⋯π (pyrid­yl) contacts, see: Wan et al. (2008 ▶)

Experimental

Crystal data

C16H18FN3O2S2 M = 367.45 Monoclinic, a = 10.0258 (4) Å b = 15.9925 (6) Å c = 11.0016 (5) Å β = 106.656 (3)° V = 1689.96 (12) Å3 Z = 4 Mo Kα radiation μ = 0.34 mm−1 T = 296 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker 2007 ▶) T min = 0.658, T max = 0.746 18809 measured reflections 3861 independent reflections 3058 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.100 S = 1.04 3861 reflections 217 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811052494/zl2432sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811052494/zl2432Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811052494/zl2432Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18FN3O2S2F(000) = 768
Mr = 367.45Dx = 1.444 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 222 reflections
a = 10.0258 (4) Åθ = 2.3–27.6°
b = 15.9925 (6) ŵ = 0.34 mm1
c = 11.0016 (5) ÅT = 296 K
β = 106.656 (3)°Block, colorless
V = 1689.96 (12) Å30.30 × 0.30 × 0.20 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3861 independent reflections
Radiation source: fine-focus sealed tube3058 reflections with I > 2σ(I)
graphiteRint = 0.031
CCD area detector scansθmax = 27.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker 2007)h = −13→13
Tmin = 0.658, Tmax = 0.746k = −20→20
18809 measured reflectionsl = −11→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0506P)2 + 0.3797P] P = (Fo2 + 2Fc2)/3
3861 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.91389 (4)0.66656 (2)0.57656 (4)0.04717 (13)
S20.69048 (4)0.53592 (2)0.54985 (5)0.04795 (14)
N11.04768 (13)0.40980 (8)0.72003 (13)0.0436 (3)
N20.64449 (12)0.69676 (7)0.54089 (14)0.0423 (3)
N30.42553 (14)0.81754 (8)0.50085 (14)0.0466 (3)
O11.22167 (14)0.21917 (7)0.75006 (15)0.0677 (4)
O20.93355 (12)0.28341 (8)0.68042 (13)0.0580 (3)
F11.60973 (12)0.46870 (8)0.86069 (15)0.0840 (4)
C11.24078 (19)0.51646 (9)0.77343 (17)0.0477 (4)
H1A1.18210.56260.76180.057*
C21.3845 (2)0.52580 (10)0.80939 (19)0.0554 (4)
H2A1.42330.57900.82240.066*
C31.46982 (18)0.45705 (11)0.82584 (19)0.0555 (5)
C41.41990 (17)0.37630 (10)0.80778 (18)0.0502 (4)
H4A1.47930.33050.81920.060*
C51.27711 (16)0.36716 (9)0.77186 (16)0.0419 (4)
C61.19005 (16)0.29208 (9)0.74546 (17)0.0465 (4)
C71.03847 (16)0.32457 (10)0.70982 (17)0.0449 (4)
C81.18809 (15)0.43610 (9)0.75556 (15)0.0397 (3)
C90.92604 (17)0.46265 (11)0.70586 (17)0.0488 (4)
H9A0.95530.51610.74650.059*
H9B0.86430.43650.74830.059*
C100.84770 (16)0.47709 (10)0.56780 (17)0.0446 (4)
H10A0.82470.42350.52570.054*
H10B0.90730.50690.52690.054*
C110.74743 (15)0.64129 (9)0.55535 (15)0.0368 (3)
C120.50387 (16)0.67350 (10)0.5460 (2)0.0531 (5)
H12A0.50050.67630.63310.064*
H12B0.48420.61640.51680.064*
C130.39430 (17)0.73083 (11)0.4648 (2)0.0545 (4)
H13A0.39030.72350.37630.065*
H13B0.30400.71630.47450.065*
C140.55667 (18)0.83880 (10)0.47625 (18)0.0507 (4)
H14A0.57650.89760.49460.061*
H14B0.54820.82970.38720.061*
C150.67565 (16)0.78703 (9)0.55582 (18)0.0470 (4)
H15A0.75900.79890.53090.056*
H15B0.69350.80240.64430.056*
C160.3137 (2)0.87270 (12)0.4299 (2)0.0615 (5)
H16A0.22760.85630.44490.092*
H16B0.30510.86860.34100.092*
H16C0.33500.92940.45750.092*
U11U22U33U12U13U23
S10.03141 (19)0.0426 (2)0.0657 (3)−0.00238 (15)0.01100 (18)−0.00061 (18)
S20.03104 (19)0.03047 (19)0.0770 (3)0.00221 (13)0.00697 (18)0.00188 (17)
N10.0375 (6)0.0350 (6)0.0536 (9)0.0071 (5)0.0055 (6)0.0042 (6)
N20.0310 (6)0.0303 (6)0.0618 (9)0.0001 (5)0.0072 (6)−0.0043 (6)
N30.0431 (7)0.0370 (7)0.0530 (9)0.0105 (5)0.0030 (6)−0.0005 (6)
O10.0549 (7)0.0274 (6)0.1107 (12)0.0032 (5)0.0075 (7)−0.0003 (6)
O20.0407 (6)0.0551 (7)0.0713 (9)−0.0104 (5)0.0047 (6)0.0008 (6)
F10.0452 (6)0.0693 (8)0.1238 (12)−0.0187 (5)0.0025 (7)0.0018 (7)
C10.0571 (9)0.0290 (7)0.0549 (10)0.0053 (7)0.0127 (8)0.0033 (7)
C20.0618 (11)0.0337 (8)0.0655 (12)−0.0110 (7)0.0102 (9)−0.0015 (7)
C30.0416 (9)0.0483 (9)0.0680 (12)−0.0110 (7)0.0019 (8)0.0006 (8)
C40.0386 (8)0.0371 (8)0.0670 (12)0.0029 (6)0.0026 (8)0.0035 (7)
C50.0388 (8)0.0278 (7)0.0531 (10)0.0014 (6)0.0039 (7)0.0020 (6)
C60.0402 (8)0.0306 (7)0.0621 (11)0.0000 (6)0.0041 (7)0.0013 (7)
C70.0378 (8)0.0399 (8)0.0516 (10)−0.0002 (6)0.0042 (7)0.0028 (7)
C80.0403 (7)0.0315 (7)0.0434 (9)0.0046 (6)0.0058 (7)0.0038 (6)
C90.0428 (8)0.0481 (9)0.0556 (11)0.0139 (7)0.0144 (8)0.0060 (7)
C100.0357 (7)0.0366 (7)0.0582 (10)0.0080 (6)0.0083 (7)−0.0004 (7)
C110.0326 (7)0.0332 (7)0.0411 (8)0.0000 (5)0.0047 (6)−0.0016 (6)
C120.0321 (7)0.0320 (7)0.0921 (14)0.0004 (6)0.0130 (8)−0.0041 (8)
C130.0341 (8)0.0466 (9)0.0742 (12)0.0037 (7)0.0014 (8)−0.0134 (8)
C140.0519 (9)0.0373 (8)0.0588 (11)0.0038 (7)0.0092 (8)0.0006 (7)
C150.0410 (8)0.0300 (7)0.0660 (11)−0.0022 (6)0.0090 (8)−0.0053 (7)
C160.0582 (11)0.0553 (11)0.0632 (12)0.0224 (9)0.0050 (9)0.0085 (9)
S1—C111.6673 (15)C4—H4A0.9300
S2—C111.7747 (15)C5—C81.397 (2)
S2—C101.7973 (15)C5—C61.464 (2)
N1—C71.369 (2)C6—C71.547 (2)
N1—C81.413 (2)C9—C101.514 (2)
N1—C91.4550 (19)C9—H9A0.9700
N2—C111.3353 (19)C9—H9B0.9700
N2—C121.4746 (19)C10—H10A0.9700
N2—C151.4763 (19)C10—H10B0.9700
N3—C131.452 (2)C12—C131.511 (2)
N3—C141.457 (2)C12—H12A0.9700
N3—C161.464 (2)C12—H12B0.9700
O1—C61.2056 (18)C13—H13A0.9700
O2—C71.2039 (19)C13—H13B0.9700
F1—C31.357 (2)C14—C151.509 (2)
C1—C81.382 (2)C14—H14A0.9700
C1—C21.389 (3)C14—H14B0.9700
C1—H1A0.9300C15—H15A0.9700
C2—C31.373 (3)C15—H15B0.9700
C2—H2A0.9300C16—H16A0.9600
C3—C41.379 (2)C16—H16B0.9600
C4—C51.379 (2)C16—H16C0.9600
C11—S2—C10103.29 (7)C9—C10—S2112.11 (11)
C7—N1—C8110.95 (12)C9—C10—H10A109.2
C7—N1—C9122.35 (14)S2—C10—H10A109.2
C8—N1—C9126.50 (13)C9—C10—H10B109.2
C11—N2—C12122.86 (13)S2—C10—H10B109.2
C11—N2—C15120.31 (13)H10A—C10—H10B107.9
C12—N2—C15114.61 (12)N2—C11—S1124.34 (11)
C13—N3—C14107.92 (13)N2—C11—S2113.37 (11)
C13—N3—C16110.97 (14)S1—C11—S2122.29 (8)
C14—N3—C16110.77 (14)N2—C12—C13111.44 (14)
C8—C1—C2117.62 (14)N2—C12—H12A109.3
C8—C1—H1A121.2C13—C12—H12A109.3
C2—C1—H1A121.2N2—C12—H12B109.3
C3—C2—C1120.51 (15)C13—C12—H12B109.3
C3—C2—H2A119.7H12A—C12—H12B108.0
C1—C2—H2A119.7N3—C13—C12110.78 (14)
F1—C3—C2118.80 (16)N3—C13—H13A109.5
F1—C3—C4118.20 (16)C12—C13—H13A109.5
C2—C3—C4123.00 (16)N3—C13—H13B109.5
C3—C4—C5116.40 (15)C12—C13—H13B109.5
C3—C4—H4A121.8H13A—C13—H13B108.1
C5—C4—H4A121.8N3—C14—C15111.70 (14)
C4—C5—C8121.70 (14)N3—C14—H14A109.3
C4—C5—C6130.89 (14)C15—C14—H14A109.3
C8—C5—C6107.41 (13)N3—C14—H14B109.3
O1—C6—C5130.57 (15)C15—C14—H14B109.3
O1—C6—C7124.27 (15)H14A—C14—H14B107.9
C5—C6—C7105.15 (12)N2—C15—C14111.42 (13)
O2—C7—N1126.86 (15)N2—C15—H15A109.3
O2—C7—C6127.14 (15)C14—C15—H15A109.3
N1—C7—C6106.00 (13)N2—C15—H15B109.3
C1—C8—C5120.76 (14)C14—C15—H15B109.3
C1—C8—N1128.76 (14)H15A—C15—H15B108.0
C5—C8—N1110.48 (13)N3—C16—H16A109.5
N1—C9—C10111.95 (14)N3—C16—H16B109.5
N1—C9—H9A109.2H16A—C16—H16B109.5
C10—C9—H9A109.2N3—C16—H16C109.5
N1—C9—H9B109.2H16A—C16—H16C109.5
C10—C9—H9B109.2H16B—C16—H16C109.5
H9A—C9—H9B107.9
C8—C1—C2—C30.2 (3)C7—N1—C8—C1178.77 (17)
C1—C2—C3—F1179.83 (18)C9—N1—C8—C1−6.3 (3)
C1—C2—C3—C40.3 (3)C7—N1—C8—C5−0.9 (2)
F1—C3—C4—C5−179.72 (18)C9—N1—C8—C5174.01 (15)
C2—C3—C4—C5−0.1 (3)C7—N1—C9—C10−80.2 (2)
C3—C4—C5—C8−0.4 (3)C8—N1—C9—C10105.47 (19)
C3—C4—C5—C6−179.75 (19)N1—C9—C10—S2175.74 (11)
C4—C5—C6—O11.0 (4)C11—S2—C10—C987.13 (13)
C8—C5—C6—O1−178.4 (2)C12—N2—C11—S1−168.35 (14)
C4—C5—C6—C7−179.90 (19)C15—N2—C11—S1−6.2 (2)
C8—C5—C6—C70.70 (19)C12—N2—C11—S211.7 (2)
C8—N1—C7—O2−179.46 (18)C15—N2—C11—S2173.86 (12)
C9—N1—C7—O25.4 (3)C10—S2—C11—N2178.69 (12)
C8—N1—C7—C61.28 (18)C10—S2—C11—S1−1.28 (13)
C9—N1—C7—C6−173.87 (15)C11—N2—C12—C13−150.62 (16)
O1—C6—C7—O2−1.3 (3)C15—N2—C12—C1346.3 (2)
C5—C6—C7—O2179.54 (18)C14—N3—C13—C1263.3 (2)
O1—C6—C7—N1177.94 (19)C16—N3—C13—C12−175.16 (16)
C5—C6—C7—N1−1.21 (18)N2—C12—C13—N3−55.4 (2)
C2—C1—C8—C5−0.7 (3)C13—N3—C14—C15−62.61 (18)
C2—C1—C8—N1179.63 (17)C16—N3—C14—C15175.73 (14)
C4—C5—C8—C10.9 (3)C11—N2—C15—C14151.30 (15)
C6—C5—C8—C1−179.65 (16)C12—N2—C15—C14−45.1 (2)
C4—C5—C8—N1−179.43 (16)N3—C14—C15—N253.36 (19)
C6—C5—C8—N10.04 (19)
D—H···AD—HH···AD···AD—H···A
C13—H13B···O2i0.972.503.225 (2)131
C12—H12A···O2ii0.972.613.385 (2)137
C15—H15B···O2ii0.972.623.383 (2)136
C1—H1A···O1iii0.932.703.282 (3)121
C2—H2A···O1iii0.932.673.275 (2)124
C12—H12B···S2i0.972.973.866 (3)155
C11—S1···Cg1iv1.6673 (15)3.403 (2)3.695 (3)86.43 (6)
C═S···CgC···CgS···Cg
C11═S1···Cg1i3.695 (3)3.403 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13B⋯O2i0.972.503.225 (2)131
C12—H12A⋯O2ii0.972.613.385 (2)137
C15—H15B⋯O2ii0.972.623.383 (2)136
C1—H1A⋯O1iii0.932.703.282 (3)121
C2—H2A⋯O1iii0.932.673.275 (2)124
C12—H12B⋯S2i0.972.973.866 (3)155

Symmetry codes: (i) ; (ii) ; (iii) .

  10 in total

1.  Synthesis and pharmacological activities of hydrazones, Schiff and Mannich bases of isatin derivatives.

Authors:  S K Sridhar; A Ramesh
Journal:  Biol Pharm Bull       Date:  2001-10       Impact factor: 2.233

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and in vitro antitumor activity of 4(3H)-quinazolinone derivatives with dithiocarbamate side chains.

Authors:  Sheng-Li Cao; Yu-Ping Feng; Yu-Yang Jiang; Shi-Ying Liu; Guo-Yu Ding; Run-Tao Li
Journal:  Bioorg Med Chem Lett       Date:  2005-04-01       Impact factor: 2.823

4.  Structure-activity study of brassinin derivatives as indoleamine 2,3-dioxygenase inhibitors.

Authors:  Paul Gaspari; Tinku Banerjee; William P Malachowski; Alexander J Muller; George C Prendergast; James DuHadaway; Shauna Bennett; Ashley M Donovan
Journal:  J Med Chem       Date:  2006-01-26       Impact factor: 7.446

5.  Synthesis of new triazolyl-N,N-dialkyldithiocarbamates as antifungal agents.

Authors:  Sumru Ozkirimli; T Idil Apak; Muammer Kiraz; Yildiz Yegenoglu
Journal:  Arch Pharm Res       Date:  2005-11       Impact factor: 4.946

6.  Dose-related proconvulsant and anticonvulsant activity of isatin, a putative biological factor, in rats.

Authors:  S K Bhattacharya; A Chakrabarti
Journal:  Indian J Exp Biol       Date:  1998-01       Impact factor: 0.818

7.  Isatin: a link between natriuretic peptides and monoamines?

Authors:  A E Medvedev; A Clow; M Sandler; V Glover
Journal:  Biochem Pharmacol       Date:  1996-08-09       Impact factor: 5.858

8.  Probing anion-pi interactions in 1-D Co(II), Ni(II), and Cd(II) coordination polymers containing flexible pyrazine ligands.

Authors:  Cory A Black; Lyall R Hanton; Mark D Spicer
Journal:  Inorg Chem       Date:  2007-03-16       Impact factor: 5.165

9.  2-(2,3-Dioxoindolin-1-yl)ethyl 4-(4-nitro-phen-yl)piperazine-1-carbodithio-ate.

Authors:  Yao Wang; Chong-Qing Wan; Sheng-Li Cao; Tingting Zheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total
  1 in total

1.  5-Methyl-3,3-bis-(morpholin-4-yl)-1-[2-(morpholin-4-yl)eth-yl]-2,3-dihydro-1H-indol-2-one.

Authors:  Hui-Hui Lin; Wei-Yao Wu; Jing-Jing Zhang; Sheng-Li Cao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.