| Literature DB >> 22259593 |
Yao Wang1, Hui-Hui Lin, Sheng-Li Cao.
Abstract
In the title compound, C(16)H(18)FN(3)O(2)S(2), the methyl-piperazine ring adopts a chair conformation, while the (2,3-dioxoindolin-1-yl)ethyl unit is linked to one of the N atoms of the piperazine ring via the carbodithio-ate group. In the crystal, each mol-ecule is linked to its neighbors within the ([Formula: see text]03) plane through weak C-H(methyl-ene)⋯O, C-H(ar-yl)⋯O and C-H(methyl-ene)⋯S inter-actions. Perpendicular to this plane mol-ecules are connected through inter-molecular short N⋯π(pyrrole ring) contacts [N⋯C centroid = 3.232 (2) Å], another set of C-H(methyl-ene)⋯O inter-actions and through short contacts between carbodithio-ate S atoms and the pyrrole rings [C⋯centroid = 3.695 (3), S⋯centroid = 3.403 (2) Å].Entities:
Year: 2011 PMID: 22259593 PMCID: PMC3254445 DOI: 10.1107/S1600536811052494
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H18FN3O2S2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 222 reflections |
| θ = 2.3–27.6° | |
| µ = 0.34 mm−1 | |
| β = 106.656 (3)° | Block, colorless |
| 0.30 × 0.30 × 0.20 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3861 independent reflections |
| Radiation source: fine-focus sealed tube | 3058 reflections with |
| graphite | |
| CCD area detector scans | θmax = 27.6°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 18809 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3861 reflections | (Δ/σ)max = 0.001 |
| 217 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.91389 (4) | 0.66656 (2) | 0.57656 (4) | 0.04717 (13) | |
| S2 | 0.69048 (4) | 0.53592 (2) | 0.54985 (5) | 0.04795 (14) | |
| N1 | 1.04768 (13) | 0.40980 (8) | 0.72003 (13) | 0.0436 (3) | |
| N2 | 0.64449 (12) | 0.69676 (7) | 0.54089 (14) | 0.0423 (3) | |
| N3 | 0.42553 (14) | 0.81754 (8) | 0.50085 (14) | 0.0466 (3) | |
| O1 | 1.22167 (14) | 0.21917 (7) | 0.75006 (15) | 0.0677 (4) | |
| O2 | 0.93355 (12) | 0.28341 (8) | 0.68042 (13) | 0.0580 (3) | |
| F1 | 1.60973 (12) | 0.46870 (8) | 0.86069 (15) | 0.0840 (4) | |
| C1 | 1.24078 (19) | 0.51646 (9) | 0.77343 (17) | 0.0477 (4) | |
| H1A | 1.1821 | 0.5626 | 0.7618 | 0.057* | |
| C2 | 1.3845 (2) | 0.52580 (10) | 0.80939 (19) | 0.0554 (4) | |
| H2A | 1.4233 | 0.5790 | 0.8224 | 0.066* | |
| C3 | 1.46982 (18) | 0.45705 (11) | 0.82584 (19) | 0.0555 (5) | |
| C4 | 1.41990 (17) | 0.37630 (10) | 0.80778 (18) | 0.0502 (4) | |
| H4A | 1.4793 | 0.3305 | 0.8192 | 0.060* | |
| C5 | 1.27711 (16) | 0.36716 (9) | 0.77186 (16) | 0.0419 (4) | |
| C6 | 1.19005 (16) | 0.29208 (9) | 0.74546 (17) | 0.0465 (4) | |
| C7 | 1.03847 (16) | 0.32457 (10) | 0.70982 (17) | 0.0449 (4) | |
| C8 | 1.18809 (15) | 0.43610 (9) | 0.75556 (15) | 0.0397 (3) | |
| C9 | 0.92604 (17) | 0.46265 (11) | 0.70586 (17) | 0.0488 (4) | |
| H9A | 0.9553 | 0.5161 | 0.7465 | 0.059* | |
| H9B | 0.8643 | 0.4365 | 0.7483 | 0.059* | |
| C10 | 0.84770 (16) | 0.47709 (10) | 0.56780 (17) | 0.0446 (4) | |
| H10A | 0.8247 | 0.4235 | 0.5257 | 0.054* | |
| H10B | 0.9073 | 0.5069 | 0.5269 | 0.054* | |
| C11 | 0.74743 (15) | 0.64129 (9) | 0.55535 (15) | 0.0368 (3) | |
| C12 | 0.50387 (16) | 0.67350 (10) | 0.5460 (2) | 0.0531 (5) | |
| H12A | 0.5005 | 0.6763 | 0.6331 | 0.064* | |
| H12B | 0.4842 | 0.6164 | 0.5168 | 0.064* | |
| C13 | 0.39430 (17) | 0.73083 (11) | 0.4648 (2) | 0.0545 (4) | |
| H13A | 0.3903 | 0.7235 | 0.3763 | 0.065* | |
| H13B | 0.3040 | 0.7163 | 0.4745 | 0.065* | |
| C14 | 0.55667 (18) | 0.83880 (10) | 0.47625 (18) | 0.0507 (4) | |
| H14A | 0.5765 | 0.8976 | 0.4946 | 0.061* | |
| H14B | 0.5482 | 0.8297 | 0.3872 | 0.061* | |
| C15 | 0.67565 (16) | 0.78703 (9) | 0.55582 (18) | 0.0470 (4) | |
| H15A | 0.7590 | 0.7989 | 0.5309 | 0.056* | |
| H15B | 0.6935 | 0.8024 | 0.6443 | 0.056* | |
| C16 | 0.3137 (2) | 0.87270 (12) | 0.4299 (2) | 0.0615 (5) | |
| H16A | 0.2276 | 0.8563 | 0.4449 | 0.092* | |
| H16B | 0.3051 | 0.8686 | 0.3410 | 0.092* | |
| H16C | 0.3350 | 0.9294 | 0.4575 | 0.092* |
| S1 | 0.03141 (19) | 0.0426 (2) | 0.0657 (3) | −0.00238 (15) | 0.01100 (18) | −0.00061 (18) |
| S2 | 0.03104 (19) | 0.03047 (19) | 0.0770 (3) | 0.00221 (13) | 0.00697 (18) | 0.00188 (17) |
| N1 | 0.0375 (6) | 0.0350 (6) | 0.0536 (9) | 0.0071 (5) | 0.0055 (6) | 0.0042 (6) |
| N2 | 0.0310 (6) | 0.0303 (6) | 0.0618 (9) | 0.0001 (5) | 0.0072 (6) | −0.0043 (6) |
| N3 | 0.0431 (7) | 0.0370 (7) | 0.0530 (9) | 0.0105 (5) | 0.0030 (6) | −0.0005 (6) |
| O1 | 0.0549 (7) | 0.0274 (6) | 0.1107 (12) | 0.0032 (5) | 0.0075 (7) | −0.0003 (6) |
| O2 | 0.0407 (6) | 0.0551 (7) | 0.0713 (9) | −0.0104 (5) | 0.0047 (6) | 0.0008 (6) |
| F1 | 0.0452 (6) | 0.0693 (8) | 0.1238 (12) | −0.0187 (5) | 0.0025 (7) | 0.0018 (7) |
| C1 | 0.0571 (9) | 0.0290 (7) | 0.0549 (10) | 0.0053 (7) | 0.0127 (8) | 0.0033 (7) |
| C2 | 0.0618 (11) | 0.0337 (8) | 0.0655 (12) | −0.0110 (7) | 0.0102 (9) | −0.0015 (7) |
| C3 | 0.0416 (9) | 0.0483 (9) | 0.0680 (12) | −0.0110 (7) | 0.0019 (8) | 0.0006 (8) |
| C4 | 0.0386 (8) | 0.0371 (8) | 0.0670 (12) | 0.0029 (6) | 0.0026 (8) | 0.0035 (7) |
| C5 | 0.0388 (8) | 0.0278 (7) | 0.0531 (10) | 0.0014 (6) | 0.0039 (7) | 0.0020 (6) |
| C6 | 0.0402 (8) | 0.0306 (7) | 0.0621 (11) | 0.0000 (6) | 0.0041 (7) | 0.0013 (7) |
| C7 | 0.0378 (8) | 0.0399 (8) | 0.0516 (10) | −0.0002 (6) | 0.0042 (7) | 0.0028 (7) |
| C8 | 0.0403 (7) | 0.0315 (7) | 0.0434 (9) | 0.0046 (6) | 0.0058 (7) | 0.0038 (6) |
| C9 | 0.0428 (8) | 0.0481 (9) | 0.0556 (11) | 0.0139 (7) | 0.0144 (8) | 0.0060 (7) |
| C10 | 0.0357 (7) | 0.0366 (7) | 0.0582 (10) | 0.0080 (6) | 0.0083 (7) | −0.0004 (7) |
| C11 | 0.0326 (7) | 0.0332 (7) | 0.0411 (8) | 0.0000 (5) | 0.0047 (6) | −0.0016 (6) |
| C12 | 0.0321 (7) | 0.0320 (7) | 0.0921 (14) | 0.0004 (6) | 0.0130 (8) | −0.0041 (8) |
| C13 | 0.0341 (8) | 0.0466 (9) | 0.0742 (12) | 0.0037 (7) | 0.0014 (8) | −0.0134 (8) |
| C14 | 0.0519 (9) | 0.0373 (8) | 0.0588 (11) | 0.0038 (7) | 0.0092 (8) | 0.0006 (7) |
| C15 | 0.0410 (8) | 0.0300 (7) | 0.0660 (11) | −0.0022 (6) | 0.0090 (8) | −0.0053 (7) |
| C16 | 0.0582 (11) | 0.0553 (11) | 0.0632 (12) | 0.0224 (9) | 0.0050 (9) | 0.0085 (9) |
| S1—C11 | 1.6673 (15) | C4—H4A | 0.9300 |
| S2—C11 | 1.7747 (15) | C5—C8 | 1.397 (2) |
| S2—C10 | 1.7973 (15) | C5—C6 | 1.464 (2) |
| N1—C7 | 1.369 (2) | C6—C7 | 1.547 (2) |
| N1—C8 | 1.413 (2) | C9—C10 | 1.514 (2) |
| N1—C9 | 1.4550 (19) | C9—H9A | 0.9700 |
| N2—C11 | 1.3353 (19) | C9—H9B | 0.9700 |
| N2—C12 | 1.4746 (19) | C10—H10A | 0.9700 |
| N2—C15 | 1.4763 (19) | C10—H10B | 0.9700 |
| N3—C13 | 1.452 (2) | C12—C13 | 1.511 (2) |
| N3—C14 | 1.457 (2) | C12—H12A | 0.9700 |
| N3—C16 | 1.464 (2) | C12—H12B | 0.9700 |
| O1—C6 | 1.2056 (18) | C13—H13A | 0.9700 |
| O2—C7 | 1.2039 (19) | C13—H13B | 0.9700 |
| F1—C3 | 1.357 (2) | C14—C15 | 1.509 (2) |
| C1—C8 | 1.382 (2) | C14—H14A | 0.9700 |
| C1—C2 | 1.389 (3) | C14—H14B | 0.9700 |
| C1—H1A | 0.9300 | C15—H15A | 0.9700 |
| C2—C3 | 1.373 (3) | C15—H15B | 0.9700 |
| C2—H2A | 0.9300 | C16—H16A | 0.9600 |
| C3—C4 | 1.379 (2) | C16—H16B | 0.9600 |
| C4—C5 | 1.379 (2) | C16—H16C | 0.9600 |
| C11—S2—C10 | 103.29 (7) | C9—C10—S2 | 112.11 (11) |
| C7—N1—C8 | 110.95 (12) | C9—C10—H10A | 109.2 |
| C7—N1—C9 | 122.35 (14) | S2—C10—H10A | 109.2 |
| C8—N1—C9 | 126.50 (13) | C9—C10—H10B | 109.2 |
| C11—N2—C12 | 122.86 (13) | S2—C10—H10B | 109.2 |
| C11—N2—C15 | 120.31 (13) | H10A—C10—H10B | 107.9 |
| C12—N2—C15 | 114.61 (12) | N2—C11—S1 | 124.34 (11) |
| C13—N3—C14 | 107.92 (13) | N2—C11—S2 | 113.37 (11) |
| C13—N3—C16 | 110.97 (14) | S1—C11—S2 | 122.29 (8) |
| C14—N3—C16 | 110.77 (14) | N2—C12—C13 | 111.44 (14) |
| C8—C1—C2 | 117.62 (14) | N2—C12—H12A | 109.3 |
| C8—C1—H1A | 121.2 | C13—C12—H12A | 109.3 |
| C2—C1—H1A | 121.2 | N2—C12—H12B | 109.3 |
| C3—C2—C1 | 120.51 (15) | C13—C12—H12B | 109.3 |
| C3—C2—H2A | 119.7 | H12A—C12—H12B | 108.0 |
| C1—C2—H2A | 119.7 | N3—C13—C12 | 110.78 (14) |
| F1—C3—C2 | 118.80 (16) | N3—C13—H13A | 109.5 |
| F1—C3—C4 | 118.20 (16) | C12—C13—H13A | 109.5 |
| C2—C3—C4 | 123.00 (16) | N3—C13—H13B | 109.5 |
| C3—C4—C5 | 116.40 (15) | C12—C13—H13B | 109.5 |
| C3—C4—H4A | 121.8 | H13A—C13—H13B | 108.1 |
| C5—C4—H4A | 121.8 | N3—C14—C15 | 111.70 (14) |
| C4—C5—C8 | 121.70 (14) | N3—C14—H14A | 109.3 |
| C4—C5—C6 | 130.89 (14) | C15—C14—H14A | 109.3 |
| C8—C5—C6 | 107.41 (13) | N3—C14—H14B | 109.3 |
| O1—C6—C5 | 130.57 (15) | C15—C14—H14B | 109.3 |
| O1—C6—C7 | 124.27 (15) | H14A—C14—H14B | 107.9 |
| C5—C6—C7 | 105.15 (12) | N2—C15—C14 | 111.42 (13) |
| O2—C7—N1 | 126.86 (15) | N2—C15—H15A | 109.3 |
| O2—C7—C6 | 127.14 (15) | C14—C15—H15A | 109.3 |
| N1—C7—C6 | 106.00 (13) | N2—C15—H15B | 109.3 |
| C1—C8—C5 | 120.76 (14) | C14—C15—H15B | 109.3 |
| C1—C8—N1 | 128.76 (14) | H15A—C15—H15B | 108.0 |
| C5—C8—N1 | 110.48 (13) | N3—C16—H16A | 109.5 |
| N1—C9—C10 | 111.95 (14) | N3—C16—H16B | 109.5 |
| N1—C9—H9A | 109.2 | H16A—C16—H16B | 109.5 |
| C10—C9—H9A | 109.2 | N3—C16—H16C | 109.5 |
| N1—C9—H9B | 109.2 | H16A—C16—H16C | 109.5 |
| C10—C9—H9B | 109.2 | H16B—C16—H16C | 109.5 |
| H9A—C9—H9B | 107.9 | ||
| C8—C1—C2—C3 | 0.2 (3) | C7—N1—C8—C1 | 178.77 (17) |
| C1—C2—C3—F1 | 179.83 (18) | C9—N1—C8—C1 | −6.3 (3) |
| C1—C2—C3—C4 | 0.3 (3) | C7—N1—C8—C5 | −0.9 (2) |
| F1—C3—C4—C5 | −179.72 (18) | C9—N1—C8—C5 | 174.01 (15) |
| C2—C3—C4—C5 | −0.1 (3) | C7—N1—C9—C10 | −80.2 (2) |
| C3—C4—C5—C8 | −0.4 (3) | C8—N1—C9—C10 | 105.47 (19) |
| C3—C4—C5—C6 | −179.75 (19) | N1—C9—C10—S2 | 175.74 (11) |
| C4—C5—C6—O1 | 1.0 (4) | C11—S2—C10—C9 | 87.13 (13) |
| C8—C5—C6—O1 | −178.4 (2) | C12—N2—C11—S1 | −168.35 (14) |
| C4—C5—C6—C7 | −179.90 (19) | C15—N2—C11—S1 | −6.2 (2) |
| C8—C5—C6—C7 | 0.70 (19) | C12—N2—C11—S2 | 11.7 (2) |
| C8—N1—C7—O2 | −179.46 (18) | C15—N2—C11—S2 | 173.86 (12) |
| C9—N1—C7—O2 | 5.4 (3) | C10—S2—C11—N2 | 178.69 (12) |
| C8—N1—C7—C6 | 1.28 (18) | C10—S2—C11—S1 | −1.28 (13) |
| C9—N1—C7—C6 | −173.87 (15) | C11—N2—C12—C13 | −150.62 (16) |
| O1—C6—C7—O2 | −1.3 (3) | C15—N2—C12—C13 | 46.3 (2) |
| C5—C6—C7—O2 | 179.54 (18) | C14—N3—C13—C12 | 63.3 (2) |
| O1—C6—C7—N1 | 177.94 (19) | C16—N3—C13—C12 | −175.16 (16) |
| C5—C6—C7—N1 | −1.21 (18) | N2—C12—C13—N3 | −55.4 (2) |
| C2—C1—C8—C5 | −0.7 (3) | C13—N3—C14—C15 | −62.61 (18) |
| C2—C1—C8—N1 | 179.63 (17) | C16—N3—C14—C15 | 175.73 (14) |
| C4—C5—C8—C1 | 0.9 (3) | C11—N2—C15—C14 | 151.30 (15) |
| C6—C5—C8—C1 | −179.65 (16) | C12—N2—C15—C14 | −45.1 (2) |
| C4—C5—C8—N1 | −179.43 (16) | N3—C14—C15—N2 | 53.36 (19) |
| C6—C5—C8—N1 | 0.04 (19) |
| H··· | ||||
| C13—H13B···O2i | 0.97 | 2.50 | 3.225 (2) | 131 |
| C12—H12A···O2ii | 0.97 | 2.61 | 3.385 (2) | 137 |
| C15—H15B···O2ii | 0.97 | 2.62 | 3.383 (2) | 136 |
| C1—H1A···O1iii | 0.93 | 2.70 | 3.282 (3) | 121 |
| C2—H2A···O1iii | 0.93 | 2.67 | 3.275 (2) | 124 |
| C12—H12B···S2i | 0.97 | 2.97 | 3.866 (3) | 155 |
| C11—S1···Cg1iv | 1.6673 (15) | 3.403 (2) | 3.695 (3) | 86.43 (6) |
| C═S···Cg | C···Cg | S···Cg |
| C11═S1···Cg1i | 3.695 (3) | 3.403 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C13—H13 | 0.97 | 2.50 | 3.225 (2) | 131 |
| C12—H12 | 0.97 | 2.61 | 3.385 (2) | 137 |
| C15—H15 | 0.97 | 2.62 | 3.383 (2) | 136 |
| C1—H1 | 0.93 | 2.70 | 3.282 (3) | 121 |
| C2—H2 | 0.93 | 2.67 | 3.275 (2) | 124 |
| C12—H12 | 0.97 | 2.97 | 3.866 (3) | 155 |
Symmetry codes: (i) ; (ii) ; (iii) .