Literature DB >> 21588610

2-(2,3-Dioxoindolin-1-yl)ethyl 4-(4-nitro-phen-yl)piperazine-1-carbodithio-ate.

Yao Wang1, Chong-Qing Wan, Sheng-Li Cao, Tingting Zheng.   

Abstract

In the title compound, C(21)H(20)N(4)O(4)S(2, )the piperazine ring adopts a chair conformation. The 1-ethyl-indoline-2,3-dione system links to one N atom of the piperazine ring via a carbodithio-ate group. The indoline-2,3-dione ring and the nitro-benzene ring subtend adihedral angle of 37.27 (7)°. In the crystal structure, weak C-H⋯O and π-π stacking inter-actions [centroid-centroid distances = 3.534 (5) and 3.797 (5) Å] may help to establish the packing.

Entities:  

Year:  2010        PMID: 21588610      PMCID: PMC3008017          DOI: 10.1107/S1600536810030618

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the fungicidal activity of dithio­carbamates, see: Farghaly et al. (1999 ▶); Xu et al. (2002 ▶); Ozkirimli et al. (2005 ▶) and for their anti­bacterial activity, see: Chourasia et al. (1999 ▶); Imamura et al. (2001 ▶). For the effective anti­tumor activity of dithio­carbamates, see: Cao et al. (2005 ▶); Gaspari et al. (2006 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C21H20N4O4S2 M = 456.53 Monoclinic, a = 34.4244 (8) Å b = 6.8754 (2) Å c = 17.9938 (4) Å β = 103.185 (1)° V = 4146.53 (18) Å3 Z = 8 Mo Kα radiation μ = 0.29 mm−1 T = 296 K 0.15 × 0.13 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer 25340 measured reflections 5843 independent reflections 4309 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.107 S = 1.03 5843 reflections 280 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2 and SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030618/zq2052sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030618/zq2052Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20N4O4S2F(000) = 1904
Mr = 456.53Dx = 1.463 Mg m3Dm = 1.463 Mg m3Dm measured by not measured
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 34.4244 (8) ÅCell parameters from 8247 reflections
b = 6.8754 (2) Åθ = 2.3–29.2°
c = 17.9938 (4) ŵ = 0.29 mm1
β = 103.185 (1)°T = 296 K
V = 4146.53 (18) Å3Block, orange
Z = 80.15 × 0.13 × 0.10 mm
Bruker APEXII CCD area-detector diffractometer4309 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 29.8°, θmin = 2.3°
phi and ω scansh = −45→48
25340 measured reflectionsk = −9→7
5843 independent reflectionsl = −24→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0528P)2 + 1.1993P] where P = (Fo2 + 2Fc2)/3
5843 reflections(Δ/σ)max < 0.001
280 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.22169 (4)0.0960 (3)0.55107 (9)0.0525 (4)
C20.20345 (5)−0.0339 (3)0.49616 (10)0.0586 (4)
H20.2133−0.15970.49600.070*
C30.17055 (5)0.0221 (2)0.44143 (9)0.0522 (4)
H30.1585−0.06640.40420.063*
C40.15485 (4)0.2101 (2)0.44084 (8)0.0418 (3)
C50.17505 (5)0.3391 (3)0.49705 (9)0.0529 (4)
H50.16600.46640.49740.063*
C60.20780 (5)0.2823 (3)0.55145 (10)0.0561 (4)
H60.22050.37000.58840.067*
C70.10263 (5)0.1336 (2)0.32661 (9)0.0469 (3)
H7A0.10460.00090.34530.056*
H7B0.11750.14260.28700.056*
C80.05960 (5)0.1827 (2)0.29344 (9)0.0476 (3)
H8A0.04930.09910.25000.057*
H8B0.04410.15950.33130.057*
C90.07011 (5)0.5142 (2)0.33419 (8)0.0499 (4)
H9A0.05440.49550.37210.060*
H9B0.06730.64870.31750.060*
C100.11353 (5)0.4710 (2)0.36929 (9)0.0509 (4)
H10A0.12950.50700.33350.061*
H10B0.12220.54930.41490.061*
C110.12259 (4)0.8667 (2)0.12798 (7)0.0400 (3)
C120.13746 (5)0.7170 (3)0.17715 (9)0.0526 (4)
H120.12500.59620.17330.063*
C130.17187 (5)0.7545 (4)0.23274 (10)0.0698 (6)
H130.18260.65580.26660.084*
C140.19059 (5)0.9315 (4)0.23961 (11)0.0757 (6)
H140.21350.95090.27790.091*
C150.17588 (5)1.0806 (3)0.19041 (11)0.0672 (5)
H150.18851.20120.19480.081*
C160.14155 (4)1.0463 (2)0.13361 (9)0.0483 (4)
C170.12020 (5)1.1645 (2)0.07061 (10)0.0509 (4)
C180.08641 (4)1.0341 (2)0.02587 (8)0.0436 (3)
C190.06096 (4)0.7055 (2)0.04397 (8)0.0415 (3)
H19A0.07450.58330.05920.050*
H19B0.05170.7040−0.01110.050*
C200.02520 (4)0.7204 (2)0.07963 (8)0.0411 (3)
H20A0.00610.62120.05730.049*
H20B0.01260.84590.06650.049*
C220.04231 (4)0.4390 (2)0.19615 (7)0.0368 (3)
N10.12011 (4)0.26548 (18)0.38917 (7)0.0420 (3)
N20.05537 (4)0.38618 (19)0.26924 (7)0.0446 (3)
N30.25633 (5)0.0353 (3)0.60869 (9)0.0688 (4)
N40.08920 (3)0.86365 (18)0.06542 (6)0.0386 (3)
O10.27296 (4)0.1532 (3)0.65616 (9)0.0878 (5)
O20.26757 (6)−0.1329 (3)0.60752 (10)0.1117 (7)
O30.12620 (4)1.32892 (19)0.05188 (9)0.0767 (4)
O40.06274 (4)1.07378 (18)−0.03291 (6)0.0592 (3)
S10.031276 (12)0.28227 (6)0.12387 (2)0.04687 (11)
S20.036236 (11)0.69395 (5)0.18228 (2)0.04120 (10)
U11U22U33U12U13U23
C10.0424 (8)0.0715 (12)0.0423 (8)0.0063 (8)0.0071 (6)0.0042 (8)
C20.0598 (10)0.0559 (11)0.0567 (10)0.0124 (8)0.0061 (8)0.0048 (8)
C30.0558 (9)0.0501 (9)0.0463 (8)0.0047 (7)0.0025 (7)−0.0024 (7)
C40.0403 (7)0.0501 (9)0.0361 (7)0.0013 (6)0.0108 (6)0.0001 (6)
C50.0470 (8)0.0566 (10)0.0516 (9)0.0072 (7)0.0043 (7)−0.0127 (8)
C60.0455 (8)0.0718 (12)0.0479 (9)0.0012 (8)0.0047 (7)−0.0132 (8)
C70.0557 (8)0.0401 (8)0.0420 (8)0.0016 (7)0.0051 (6)−0.0050 (6)
C80.0551 (8)0.0400 (8)0.0429 (8)−0.0050 (7)0.0011 (6)0.0027 (6)
C90.0687 (10)0.0426 (9)0.0328 (7)0.0089 (7)−0.0002 (6)−0.0043 (6)
C100.0633 (9)0.0414 (8)0.0417 (8)−0.0043 (7)−0.0011 (7)−0.0021 (7)
C110.0381 (7)0.0504 (8)0.0315 (7)0.0028 (6)0.0078 (5)0.0015 (6)
C120.0474 (8)0.0650 (11)0.0425 (8)0.0055 (7)0.0040 (6)0.0119 (7)
C130.0485 (9)0.1117 (17)0.0451 (9)0.0125 (10)0.0025 (7)0.0187 (10)
C140.0451 (9)0.130 (2)0.0468 (10)−0.0066 (11)−0.0011 (7)−0.0083 (11)
C150.0524 (10)0.0881 (15)0.0624 (11)−0.0210 (10)0.0160 (8)−0.0200 (10)
C160.0455 (8)0.0548 (10)0.0470 (8)−0.0061 (7)0.0158 (6)−0.0067 (7)
C170.0543 (9)0.0430 (9)0.0628 (10)0.0008 (7)0.0289 (8)0.0016 (7)
C180.0490 (8)0.0447 (8)0.0405 (7)0.0114 (6)0.0177 (6)0.0067 (6)
C190.0469 (7)0.0418 (8)0.0329 (7)0.0010 (6)0.0029 (5)−0.0030 (6)
C200.0401 (7)0.0442 (8)0.0348 (7)0.0019 (6)−0.0005 (5)0.0030 (6)
C220.0335 (6)0.0390 (7)0.0363 (7)−0.0002 (5)0.0048 (5)−0.0025 (5)
N10.0470 (6)0.0385 (7)0.0374 (6)0.0021 (5)0.0032 (5)−0.0027 (5)
N20.0545 (7)0.0387 (7)0.0357 (6)0.0014 (5)0.0000 (5)−0.0014 (5)
N30.0573 (9)0.0930 (14)0.0513 (9)0.0138 (9)0.0020 (7)0.0054 (9)
N40.0404 (6)0.0400 (6)0.0333 (6)0.0021 (5)0.0042 (5)0.0037 (5)
O10.0680 (8)0.1118 (13)0.0681 (9)0.0036 (9)−0.0170 (7)−0.0075 (9)
O20.1188 (14)0.1077 (14)0.0826 (11)0.0530 (12)−0.0310 (10)−0.0040 (10)
O30.0829 (9)0.0482 (7)0.1107 (11)−0.0045 (7)0.0461 (9)0.0118 (7)
O40.0647 (7)0.0675 (8)0.0443 (6)0.0220 (6)0.0101 (5)0.0179 (5)
S10.0547 (2)0.0437 (2)0.0383 (2)−0.00326 (16)0.00241 (15)−0.00880 (15)
S20.0496 (2)0.0381 (2)0.03489 (18)0.00262 (14)0.00753 (14)−0.00231 (14)
C1—C61.368 (3)C11—C161.390 (2)
C1—C21.373 (2)C11—N41.4136 (18)
C1—N31.452 (2)C12—C131.389 (2)
C2—C31.375 (2)C12—H120.9300
C2—H20.9300C13—C141.369 (3)
C3—C41.400 (2)C13—H130.9300
C3—H30.9300C14—C151.374 (3)
C4—N11.3899 (19)C14—H140.9300
C4—C51.404 (2)C15—C161.395 (2)
C5—C61.371 (2)C15—H150.9300
C5—H50.9300C16—C171.451 (2)
C6—H60.9300C17—O31.211 (2)
C7—N11.4635 (19)C17—C181.542 (2)
C7—C81.504 (2)C18—O41.2097 (17)
C7—H7A0.9700C18—N41.3633 (19)
C7—H7B0.9700C19—N41.4511 (19)
C8—N21.462 (2)C19—C201.516 (2)
C8—H8A0.9700C19—H19A0.9700
C8—H8B0.9700C19—H19B0.9700
C9—N21.4585 (18)C20—S21.8080 (14)
C9—C101.513 (2)C20—H20A0.9700
C9—H9A0.9700C20—H20B0.9700
C9—H9B0.9700C22—N21.3394 (17)
C10—N11.4624 (19)C22—S11.6650 (14)
C10—H10A0.9700C22—S21.7760 (14)
C10—H10B0.9700N3—O21.221 (2)
C11—C121.377 (2)N3—O11.221 (2)
C6—C1—C2120.64 (15)C13—C12—H12121.5
C6—C1—N3119.78 (16)C14—C13—C12122.45 (19)
C2—C1—N3119.58 (17)C14—C13—H13118.8
C1—C2—C3120.01 (17)C12—C13—H13118.8
C1—C2—H2120.0C13—C14—C15120.56 (17)
C3—C2—H2120.0C13—C14—H14119.7
C2—C3—C4121.14 (16)C15—C14—H14119.7
C2—C3—H3119.4C14—C15—C16118.17 (19)
C4—C3—H3119.4C14—C15—H15120.9
N1—C4—C3121.97 (14)C16—C15—H15120.9
N1—C4—C5121.19 (14)C11—C16—C15120.60 (17)
C3—C4—C5116.79 (14)C11—C16—C17107.15 (14)
C6—C5—C4121.74 (16)C15—C16—C17132.16 (17)
C6—C5—H5119.1O3—C17—C16130.71 (17)
C4—C5—H5119.1O3—C17—C18123.61 (17)
C1—C6—C5119.65 (16)C16—C17—C18105.65 (13)
C1—C6—H6120.2O4—C18—N4127.11 (15)
C5—C6—H6120.2O4—C18—C17127.08 (15)
N1—C7—C8111.19 (13)N4—C18—C17105.80 (12)
N1—C7—H7A109.4N4—C19—C20113.34 (12)
C8—C7—H7A109.4N4—C19—H19A108.9
N1—C7—H7B109.4C20—C19—H19A108.9
C8—C7—H7B109.4N4—C19—H19B108.9
H7A—C7—H7B108.0C20—C19—H19B108.9
N2—C8—C7110.79 (13)H19A—C19—H19B107.7
N2—C8—H8A109.5C19—C20—S2115.08 (10)
C7—C8—H8A109.5C19—C20—H20A108.5
N2—C8—H8B109.5S2—C20—H20A108.5
C7—C8—H8B109.5C19—C20—H20B108.5
H8A—C8—H8B108.1S2—C20—H20B108.5
N2—C9—C10110.25 (13)H20A—C20—H20B107.5
N2—C9—H9A109.6N2—C22—S1123.85 (11)
C10—C9—H9A109.6N2—C22—S2114.09 (10)
N2—C9—H9B109.6S1—C22—S2122.04 (8)
C10—C9—H9B109.6C4—N1—C10119.33 (12)
H9A—C9—H9B108.1C4—N1—C7119.01 (12)
N1—C10—C9112.02 (13)C10—N1—C7113.37 (12)
N1—C10—H10A109.2C22—N2—C9126.91 (13)
C9—C10—H10A109.2C22—N2—C8122.69 (12)
N1—C10—H10B109.2C9—N2—C8110.23 (11)
C9—C10—H10B109.2O2—N3—O1122.74 (18)
H10A—C10—H10B107.9O2—N3—C1118.16 (18)
C12—C11—C16121.17 (14)O1—N3—C1119.10 (18)
C12—C11—N4128.02 (15)C18—N4—C11110.53 (12)
C16—C11—N4110.75 (13)C18—N4—C19122.84 (12)
C11—C12—C13117.04 (18)C11—N4—C19126.64 (12)
C11—C12—H12121.5C22—S2—C20103.51 (7)
C6—C1—C2—C3−0.9 (3)C5—C4—N1—C1027.1 (2)
N3—C1—C2—C3179.84 (16)C3—C4—N1—C7−9.1 (2)
C1—C2—C3—C4−0.6 (3)C5—C4—N1—C7173.37 (14)
C2—C3—C4—N1−175.64 (15)C9—C10—N1—C4−161.47 (12)
C2—C3—C4—C52.0 (2)C9—C10—N1—C750.45 (17)
N1—C4—C5—C6175.60 (15)C8—C7—N1—C4161.00 (13)
C3—C4—C5—C6−2.0 (2)C8—C7—N1—C10−50.81 (18)
C2—C1—C6—C50.8 (3)S1—C22—N2—C9172.05 (12)
N3—C1—C6—C5−179.89 (15)S2—C22—N2—C9−9.64 (19)
C4—C5—C6—C10.7 (3)S1—C22—N2—C8−2.8 (2)
N1—C7—C8—N255.31 (17)S2—C22—N2—C8175.50 (11)
N2—C9—C10—N1−54.06 (17)C10—C9—N2—C22−116.39 (16)
C16—C11—C12—C130.6 (2)C10—C9—N2—C858.99 (17)
N4—C11—C12—C13177.47 (15)C7—C8—N2—C22115.48 (15)
C11—C12—C13—C140.2 (3)C7—C8—N2—C9−60.14 (16)
C12—C13—C14—C15−0.5 (3)C6—C1—N3—O2178.82 (19)
C13—C14—C15—C160.0 (3)C2—C1—N3—O2−1.9 (3)
C12—C11—C16—C15−1.2 (2)C6—C1—N3—O1−1.1 (3)
N4—C11—C16—C15−178.54 (13)C2—C1—N3—O1178.16 (17)
C12—C11—C16—C17175.79 (13)O4—C18—N4—C11175.30 (14)
N4—C11—C16—C17−1.57 (16)C17—C18—N4—C11−3.55 (14)
C14—C15—C16—C110.9 (2)O4—C18—N4—C19−4.8 (2)
C14—C15—C16—C17−175.21 (16)C17—C18—N4—C19176.33 (12)
C11—C16—C17—O3−178.79 (16)C12—C11—N4—C18−173.73 (14)
C15—C16—C17—O3−2.3 (3)C16—C11—N4—C183.40 (16)
C11—C16—C17—C18−0.57 (15)C12—C11—N4—C196.4 (2)
C15—C16—C17—C18175.91 (16)C16—C11—N4—C19−176.48 (13)
O3—C17—C18—O42.1 (2)C20—C19—N4—C18−88.55 (15)
C16—C17—C18—O4−176.31 (14)C20—C19—N4—C1191.31 (16)
O3—C17—C18—N4−179.08 (15)N2—C22—S2—C20172.63 (10)
C16—C17—C18—N42.54 (14)S1—C22—S2—C20−9.02 (10)
N4—C19—C20—S2−66.16 (15)C19—C20—S2—C22−77.72 (12)
C3—C4—N1—C10−155.40 (14)
D—H···AD—HH···AD···AD—H···A
C13—H13···O2i0.932.523.252 (2)136.
C5—H5···O3ii0.932.333.125 (2)143.
CgCgCg···Cg (Å)sym. code
Cg1Cg23.534 (5)x, -y+1, z+0.5
Cg1Cg33.797 (5)x, -y+1, z+0.5
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯O2i0.932.523.252 (2)136
C5—H5⋯O3ii0.932.333.125 (2)143

Symmetry codes: (i) ; (ii) .

  8 in total

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Authors:  Frank H Allen
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5.  Structure-activity study of brassinin derivatives as indoleamine 2,3-dioxygenase inhibitors.

Authors:  Paul Gaspari; Tinku Banerjee; William P Malachowski; Alexander J Muller; George C Prendergast; James DuHadaway; Shauna Bennett; Ashley M Donovan
Journal:  J Med Chem       Date:  2006-01-26       Impact factor: 7.446

6.  Synthesis of new triazolyl-N,N-dialkyldithiocarbamates as antifungal agents.

Authors:  Sumru Ozkirimli; T Idil Apak; Muammer Kiraz; Yildiz Yegenoglu
Journal:  Arch Pharm Res       Date:  2005-11       Impact factor: 4.946

7.  Synthesis and in vitro antifungal activity of some N,N-disubstituted dithiocarbamic acid esters derived from 2-methylquinazolinones.

Authors:  A O Farghaly; A M Moharram
Journal:  Boll Chim Farm       Date:  1999-06

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  2-(5-Fluoro-2,3-dioxoindolin-1-yl)ethyl 4-methyl-piperazine-1-carbodithio-ate.

Authors:  Yao Wang; Hui-Hui Lin; Sheng-Li Cao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10
  1 in total

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