Literature DB >> 22259499

2-[3-Hy-droxy-4-(2-hy-droxy-eth-oxy)phen-yl]-4,4,5,5-tetra-methyl-2-imidazoline-1-oxyl 3-oxide.

Hui-Ping Ma1, Lin-Lin Jing, Lei He, Peng-Cheng Fan, Zheng-Ping Jia.   

Abstract

In the title compound, C(15)H(21)N(2)O(5), the imidazoline ring displays a twisted conformation. The mean plane of the imidazoline ring makes a dihedral angle of 22.55 (5)° with the benzene ring. In the crystal, O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a layer parallel to the bc plane.

Entities:  

Year:  2011        PMID: 22259499      PMCID: PMC3254551          DOI: 10.1107/S1600536811053979

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of nitronyl nitroxides, see: Soule et al. (2007 ▶); Blasig et al. (2002 ▶); Qin et al. (2009 ▶); Tanaka et al. (2007 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For pseudorotation parameters, see: Rao et al. (1981 ▶). For related structures, see: Jing, Ma, Fan et al. (2011 ▶); Jing, Ma, He et al. (2011 ▶).

Experimental

Crystal data

C15H21N2O5 M = 309.34 Monoclinic, a = 9.787 (4) Å b = 9.302 (3) Å c = 16.657 (6) Å β = 93.525 (3)° V = 1513.5 (10) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.25 × 0.23 × 0.21 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.975, T max = 0.979 7023 measured reflections 2784 independent reflections 2172 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.103 S = 1.01 2784 reflections 206 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811053979/is5030sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053979/is5030Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21N2O5F(000) = 660
Mr = 309.34Dx = 1.358 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2979 reflections
a = 9.787 (4) Åθ = 2.5–27.7°
b = 9.302 (3) ŵ = 0.10 mm1
c = 16.657 (6) ÅT = 296 K
β = 93.525 (3)°Block, blue
V = 1513.5 (10) Å30.25 × 0.23 × 0.21 mm
Z = 4
Bruker APEXII CCD diffractometer2784 independent reflections
Radiation source: fine-focus sealed tube2172 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −11→8
Tmin = 0.975, Tmax = 0.979k = −11→10
7023 measured reflectionsl = −20→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0486P)2 + 0.519P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2784 reflectionsΔρmax = 0.21 e Å3
206 parametersΔρmin = −0.14 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0167 (18)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.84569 (17)0.65658 (17)0.96445 (9)0.0307 (4)
C20.90504 (16)0.61269 (17)0.89405 (9)0.0291 (4)
C30.86536 (16)0.48613 (17)0.85697 (9)0.0294 (4)
H30.90520.45770.81030.035*
C40.76514 (16)0.39970 (17)0.88925 (9)0.0287 (4)
C50.70732 (19)0.44374 (19)0.95909 (10)0.0399 (4)
H50.64090.38700.98120.048*
C60.74747 (19)0.57120 (19)0.99621 (10)0.0403 (5)
H60.70780.59951.04300.048*
C70.71796 (16)0.26786 (17)0.84938 (9)0.0276 (4)
C80.69965 (17)0.06957 (17)0.76020 (10)0.0330 (4)
C90.58253 (17)0.06193 (17)0.81818 (10)0.0330 (4)
C100.7809 (2)−0.0678 (2)0.75295 (14)0.0548 (6)
H10A0.8528−0.05260.71720.082*
H10B0.7214−0.14280.73200.082*
H10C0.8199−0.09520.80500.082*
C110.6547 (2)0.1276 (2)0.67686 (11)0.0498 (5)
H11A0.60490.21560.68240.075*
H11B0.59720.05820.64870.075*
H11C0.73400.14560.64710.075*
C120.6080 (2)−0.0420 (2)0.88796 (12)0.0538 (5)
H12A0.6964−0.02350.91410.081*
H12B0.6050−0.13890.86810.081*
H12C0.5387−0.02940.92570.081*
C130.44130 (18)0.0385 (2)0.77753 (12)0.0476 (5)
H13A0.37530.03080.81760.071*
H13B0.4411−0.04840.74640.071*
H13C0.41810.11830.74280.071*
C140.8384 (2)0.83103 (19)1.06967 (10)0.0397 (4)
H14A0.86550.76401.11230.048*
H14B0.73920.83471.06440.048*
C150.8949 (2)0.9769 (2)1.08947 (11)0.0419 (5)
H15A0.88170.99931.14530.050*
H15B0.99240.97841.08190.050*
N10.78767 (13)0.18428 (14)0.80059 (8)0.0290 (3)
N20.59145 (14)0.20965 (14)0.85370 (8)0.0328 (3)
O10.91259 (12)0.20380 (13)0.78261 (7)0.0408 (3)
O20.49072 (13)0.26599 (15)0.88724 (9)0.0549 (4)
O31.00204 (13)0.70239 (14)0.86708 (8)0.0450 (4)
H3A1.02050.67810.82170.067*
O40.89083 (12)0.78448 (12)0.99533 (7)0.0377 (3)
O50.82812 (16)1.08039 (14)1.03935 (10)0.0603 (4)
H5A0.87531.15321.03850.090*
U11U22U33U12U13U23
C10.0359 (9)0.0251 (8)0.0311 (8)−0.0062 (7)0.0024 (7)−0.0044 (7)
C20.0272 (8)0.0273 (8)0.0335 (8)−0.0041 (7)0.0065 (7)0.0005 (7)
C30.0293 (9)0.0290 (9)0.0306 (8)−0.0009 (7)0.0069 (7)−0.0044 (7)
C40.0304 (9)0.0261 (8)0.0297 (8)−0.0029 (7)0.0026 (7)−0.0020 (6)
C50.0500 (11)0.0345 (10)0.0366 (9)−0.0179 (8)0.0149 (8)−0.0064 (8)
C60.0525 (12)0.0372 (10)0.0330 (9)−0.0155 (9)0.0182 (8)−0.0096 (7)
C70.0282 (9)0.0256 (8)0.0294 (8)−0.0014 (7)0.0039 (7)−0.0020 (6)
C80.0319 (9)0.0275 (9)0.0393 (9)−0.0010 (7)0.0008 (7)−0.0103 (7)
C90.0349 (9)0.0257 (9)0.0383 (9)−0.0058 (7)0.0001 (7)−0.0077 (7)
C100.0427 (12)0.0354 (11)0.0864 (16)0.0029 (9)0.0069 (11)−0.0212 (10)
C110.0516 (12)0.0604 (13)0.0370 (10)−0.0061 (10)0.0010 (9)−0.0106 (9)
C120.0684 (15)0.0405 (11)0.0520 (12)−0.0144 (10)−0.0018 (10)0.0039 (9)
C130.0332 (10)0.0472 (11)0.0619 (12)−0.0073 (9)−0.0003 (9)−0.0173 (10)
C140.0469 (11)0.0383 (10)0.0350 (9)−0.0117 (8)0.0114 (8)−0.0096 (7)
C150.0455 (11)0.0407 (11)0.0397 (9)−0.0105 (9)0.0048 (8)−0.0124 (8)
N10.0261 (7)0.0283 (7)0.0329 (7)−0.0013 (6)0.0037 (6)−0.0048 (6)
N20.0287 (8)0.0308 (8)0.0397 (8)−0.0041 (6)0.0086 (6)−0.0106 (6)
O10.0285 (7)0.0448 (8)0.0504 (7)−0.0046 (5)0.0128 (5)−0.0120 (6)
O20.0346 (7)0.0536 (9)0.0789 (10)−0.0084 (6)0.0227 (7)−0.0303 (7)
O30.0498 (8)0.0398 (7)0.0478 (8)−0.0199 (6)0.0229 (6)−0.0127 (6)
O40.0459 (7)0.0306 (6)0.0380 (7)−0.0130 (5)0.0142 (5)−0.0105 (5)
O50.0572 (9)0.0358 (8)0.0862 (11)−0.0076 (7)−0.0097 (8)−0.0098 (7)
C1—O41.3591 (19)C10—H10B0.9600
C1—C61.377 (2)C10—H10C0.9600
C1—C21.401 (2)C11—H11A0.9600
C2—O31.3607 (19)C11—H11B0.9600
C2—C31.374 (2)C11—H11C0.9600
C3—C41.401 (2)C12—H12A0.9600
C3—H30.9300C12—H12B0.9600
C4—C51.387 (2)C12—H12C0.9600
C4—C71.456 (2)C13—H13A0.9600
C5—C61.383 (2)C13—H13B0.9600
C5—H50.9300C13—H13C0.9600
C6—H60.9300C14—O41.436 (2)
C7—N11.341 (2)C14—C151.494 (2)
C7—N21.357 (2)C14—H14A0.9700
C8—N11.504 (2)C14—H14B0.9700
C8—C101.514 (2)C15—O51.408 (2)
C8—C111.529 (3)C15—H15A0.9700
C8—C91.545 (2)C15—H15B0.9700
C9—N21.496 (2)N1—O11.2893 (17)
C9—C131.517 (2)N2—O21.2753 (18)
C9—C121.521 (3)O3—H3A0.8200
C10—H10A0.9600O5—H5A0.8200
O4—C1—C6125.29 (15)C8—C11—H11A109.5
O4—C1—C2115.46 (14)C8—C11—H11B109.5
C6—C1—C2119.24 (14)H11A—C11—H11B109.5
O3—C2—C3124.08 (14)C8—C11—H11C109.5
O3—C2—C1115.55 (14)H11A—C11—H11C109.5
C3—C2—C1120.37 (14)H11B—C11—H11C109.5
C2—C3—C4120.29 (14)C9—C12—H12A109.5
C2—C3—H3119.9C9—C12—H12B109.5
C4—C3—H3119.9H12A—C12—H12B109.5
C5—C4—C3118.94 (15)C9—C12—H12C109.5
C5—C4—C7119.81 (14)H12A—C12—H12C109.5
C3—C4—C7121.21 (14)H12B—C12—H12C109.5
C6—C5—C4120.59 (15)C9—C13—H13A109.5
C6—C5—H5119.7C9—C13—H13B109.5
C4—C5—H5119.7H13A—C13—H13B109.5
C1—C6—C5120.57 (15)C9—C13—H13C109.5
C1—C6—H6119.7H13A—C13—H13C109.5
C5—C6—H6119.7H13B—C13—H13C109.5
N1—C7—N2107.49 (13)O4—C14—C15108.50 (14)
N1—C7—C4127.28 (14)O4—C14—H14A110.0
N2—C7—C4125.20 (14)C15—C14—H14A110.0
N1—C8—C10110.22 (14)O4—C14—H14B110.0
N1—C8—C11106.28 (14)C15—C14—H14B110.0
C10—C8—C11110.42 (16)H14A—C14—H14B108.4
N1—C8—C9100.34 (12)O5—C15—C14109.76 (15)
C10—C8—C9115.11 (15)O5—C15—H15A109.7
C11—C8—C9113.64 (15)C14—C15—H15A109.7
N2—C9—C13109.74 (14)O5—C15—H15B109.7
N2—C9—C12106.19 (14)C14—C15—H15B109.7
C13—C9—C12110.61 (16)H15A—C15—H15B108.2
N2—C9—C8100.22 (12)O1—N1—C7125.74 (13)
C13—C9—C8114.72 (14)O1—N1—C8121.41 (12)
C12—C9—C8114.44 (15)C7—N1—C8112.56 (13)
C8—C10—H10A109.5O2—N2—C7126.26 (14)
C8—C10—H10B109.5O2—N2—C9121.51 (13)
H10A—C10—H10B109.5C7—N2—C9112.12 (13)
C8—C10—H10C109.5C2—O3—H3A109.5
H10A—C10—H10C109.5C1—O4—C14117.73 (12)
H10B—C10—H10C109.5C15—O5—H5A109.5
O4—C1—C2—O31.4 (2)C11—C8—C9—C12158.75 (15)
C6—C1—C2—O3−179.41 (16)O4—C14—C15—O574.74 (19)
O4—C1—C2—C3−178.96 (15)N2—C7—N1—O1−178.94 (14)
C6—C1—C2—C30.2 (3)C4—C7—N1—O12.8 (3)
O3—C2—C3—C4179.57 (16)N2—C7—N1—C87.18 (18)
C1—C2—C3—C40.0 (2)C4—C7—N1—C8−171.10 (15)
C2—C3—C4—C5−0.2 (2)C10—C8—N1—O142.6 (2)
C2—C3—C4—C7177.74 (15)C11—C8—N1—O1−77.09 (18)
C3—C4—C5—C60.2 (3)C9—C8—N1—O1164.37 (14)
C7—C4—C5—C6−177.73 (16)C10—C8—N1—C7−143.25 (16)
O4—C1—C6—C5178.91 (17)C11—C8—N1—C797.09 (16)
C2—C1—C6—C5−0.2 (3)C9—C8—N1—C7−21.46 (17)
C4—C5—C6—C1−0.1 (3)N1—C7—N2—O2−172.08 (16)
C5—C4—C7—N1−155.39 (17)C4—C7—N2—O26.2 (3)
C3—C4—C7—N126.7 (2)N1—C7—N2—C911.58 (18)
C5—C4—C7—N226.6 (3)C4—C7—N2—C9−170.10 (15)
C3—C4—C7—N2−151.31 (16)C13—C9—N2—O238.3 (2)
N1—C8—C9—N224.92 (14)C12—C9—N2—O2−81.3 (2)
C10—C8—C9—N2143.18 (15)C8—C9—N2—O2159.39 (15)
C11—C8—C9—N2−88.10 (16)C13—C9—N2—C7−145.15 (15)
N1—C8—C9—C13142.35 (15)C12—C9—N2—C795.28 (17)
C10—C8—C9—C13−99.39 (19)C8—C9—N2—C7−24.07 (16)
C11—C8—C9—C1329.3 (2)C6—C1—O4—C144.0 (3)
N1—C8—C9—C12−88.24 (16)C2—C1—O4—C14−176.92 (15)
C10—C8—C9—C1230.0 (2)C15—C14—O4—C1−176.62 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1i0.821.912.678 (2)156
O5—H5A···O3ii0.822.342.993 (2)137
O5—H5A···O4ii0.822.463.111 (2)137
C12—H12A···O5iii0.962.573.410 (3)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O1i0.821.912.678 (2)156
O5—H5A⋯O3ii0.822.342.993 (2)137
O5—H5A⋯O4ii0.822.463.111 (2)137
C12—H12A⋯O5iii0.962.573.410 (3)146

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nitronyl nitroxides, a novel group of protective agents against oxidative stress in endothelial cells forming the blood-brain barrier.

Authors:  I E Blasig; K Mertsch; R F Haseloff
Journal:  Neuropharmacology       Date:  2002-11       Impact factor: 5.250

Review 3.  The chemistry and biology of nitroxide compounds.

Authors:  Benjamin P Soule; Fuminori Hyodo; Ken-Ichiro Matsumoto; Nicole L Simone; John A Cook; Murali C Krishna; James B Mitchell
Journal:  Free Radic Biol Med       Date:  2007-03-12       Impact factor: 7.376

4.  2-[4-(2-Hy-droxy-eth-oxy)phenyl]-4,4,5,5-tetra-methyl-2-imidazoline-1-oxyl 3-oxide.

Authors:  Lin-Lin Jing; Hui-Ping Ma; Xiao-Fei Fan; Lei He; Zheng-Ping Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-19

5.  2-[2-(2-Hy-droxy-eth-oxy)phen-yl]-4,4,5,5-tetra-methyl-2-imidazoline-1-oxyl 3-oxide.

Authors:  Lin-Lin Jing; Hui-Ping Ma; Lei He; Peng-Cheng Fan; Zheng-Ping Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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