Literature DB >> 22199973

2-[2-(2-Hy-droxy-eth-oxy)phen-yl]-4,4,5,5-tetra-methyl-2-imidazoline-1-oxyl 3-oxide.

Lin-Lin Jing1, Hui-Ping Ma, Lei He, Peng-Cheng Fan, Zheng-Ping Jia.   

Abstract

In the title compound, C(15)H(21)N(2)O(4), the nitronyl nitroxide unit displays a twisted conformation. The crystal structure is stabilized by non-classical C-H⋯O and C-H⋯π hydrogen bonds, which build up a three-dimensional network.

Entities:  

Year:  2011        PMID: 22199973      PMCID: PMC3239125          DOI: 10.1107/S1600536811050860

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of nitronyl nitroxides, see: Soule et al. (2007 ▶); Blasig et al. (2002 ▶); Qin et al. (2009 ▶); Tanaka et al. (2007 ▶). For their coordination properties, see: Masuda et al. (2009 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For pseudorotation parameters, see: Rao et al. (1981 ▶).

Experimental

Crystal data

C15H21N2O4 M = 293.34 Orthorhombic, a = 14.458 (7) Å b = 10.187 (5) Å c = 10.670 (5) Å V = 1571.5 (13) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.23 × 0.20 × 0.19 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.980, T max = 0.983 10740 measured reflections 1547 independent reflections 1245 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.107 S = 1.05 1547 reflections 195 parameters 1 restraint H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811050860/rk2315sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050860/rk2315Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21N2O4F(000) = 628
Mr = 293.34Dx = 1.240 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2696 reflections
a = 14.458 (7) Åθ = 2.8–23.3°
b = 10.187 (5) ŵ = 0.09 mm1
c = 10.670 (5) ÅT = 296 K
V = 1571.5 (13) Å3Block, red
Z = 40.23 × 0.20 × 0.19 mm
Bruker APEXII CCD diffractometer1547 independent reflections
Radiation source: fine–focus sealed tube1245 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −17→17
Tmin = 0.980, Tmax = 0.983k = −11→12
10740 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0518P)2 + 0.287P] where P = (Fo2 + 2Fc2)/3
1547 reflections(Δ/σ)max < 0.001
195 parametersΔρmax = 0.11 e Å3
1 restraintΔρmin = −0.14 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9017 (2)0.8466 (3)0.2894 (4)0.0611 (10)
C20.9954 (3)0.9121 (4)0.3217 (4)0.0651 (10)
C30.95885 (19)0.7595 (3)0.4802 (3)0.0464 (8)
C40.9624 (2)0.6861 (3)0.5974 (3)0.0461 (7)
C50.8832 (3)0.6738 (4)0.6705 (4)0.0636 (10)
H50.82740.70710.64100.076*
C60.8859 (3)0.6144 (4)0.7837 (5)0.0804 (14)
H60.83270.60740.83210.097*
C70.9683 (3)0.5645 (4)0.8264 (5)0.0793 (12)
H70.97050.52530.90500.095*
C81.0473 (3)0.5710 (3)0.7558 (4)0.0632 (10)
H81.10230.53560.78580.076*
C91.0443 (2)0.6313 (3)0.6386 (3)0.0469 (8)
C101.2080 (2)0.6121 (4)0.6047 (5)0.0749 (11)
H10A1.21860.51840.61300.090*
H10B1.21650.65290.68600.090*
C111.2719 (3)0.6687 (6)0.5129 (5)0.0959 (16)
H11A1.33460.64390.53480.115*
H11B1.25840.63220.43090.115*
C120.8185 (3)0.9359 (4)0.3095 (8)0.115 (2)
H12A0.76320.88390.31270.173*
H12B0.81430.99730.24150.173*
H12C0.82570.98280.38690.173*
C130.8961 (4)0.7819 (5)0.1625 (4)0.0905 (15)
H13A0.94690.72200.15290.136*
H13B0.89910.84770.09830.136*
H13C0.83890.73470.15570.136*
C140.9919 (5)1.0609 (4)0.3315 (6)0.134 (3)
H14A0.94621.08580.39240.201*
H14B0.97591.09750.25150.201*
H14C1.05131.09340.35700.201*
C151.0746 (3)0.8629 (9)0.2416 (5)0.139 (3)
H15A1.13230.88750.27940.209*
H15B1.07040.90090.15950.209*
H15C1.07130.76900.23520.209*
N10.89542 (17)0.7436 (3)0.3891 (3)0.0524 (7)
N21.01428 (18)0.8600 (2)0.4494 (3)0.0505 (7)
O10.83122 (15)0.6579 (2)0.3892 (3)0.0682 (7)
O21.07936 (16)0.9064 (2)0.5172 (2)0.0612 (6)
O31.11657 (14)0.6369 (2)0.5582 (2)0.0522 (6)
O41.2663 (2)0.8039 (4)0.5064 (5)0.1191 (15)
H41.21190.82650.50990.179*
U11U22U33U12U13U23
C10.063 (2)0.0458 (19)0.074 (3)0.0010 (16)−0.0135 (19)0.0018 (18)
C20.077 (3)0.064 (2)0.054 (2)−0.0238 (19)−0.009 (2)0.0130 (19)
C30.0374 (15)0.0421 (17)0.060 (2)−0.0002 (13)0.0027 (15)−0.0036 (14)
C40.0460 (16)0.0375 (16)0.0550 (19)−0.0034 (13)0.0071 (15)−0.0021 (15)
C50.056 (2)0.056 (2)0.079 (3)−0.0072 (17)0.0181 (19)−0.004 (2)
C60.088 (3)0.069 (3)0.085 (3)−0.017 (2)0.042 (3)0.006 (2)
C70.109 (3)0.063 (2)0.066 (2)−0.015 (2)0.021 (3)0.017 (2)
C80.076 (2)0.048 (2)0.065 (2)−0.0004 (18)−0.001 (2)0.0116 (18)
C90.0517 (18)0.0333 (16)0.056 (2)−0.0035 (13)0.0059 (16)−0.0031 (15)
C100.051 (2)0.081 (3)0.093 (3)0.0064 (19)−0.005 (2)0.010 (3)
C110.052 (2)0.135 (5)0.101 (4)−0.002 (3)0.002 (3)−0.001 (3)
C120.091 (3)0.071 (3)0.184 (6)0.027 (2)−0.010 (4)0.018 (4)
C130.118 (4)0.084 (3)0.070 (3)−0.029 (3)−0.022 (3)0.003 (2)
C140.210 (6)0.069 (3)0.123 (4)−0.059 (4)−0.085 (5)0.045 (3)
C150.074 (3)0.285 (9)0.059 (3)−0.037 (4)0.007 (2)−0.004 (4)
N10.0412 (14)0.0455 (15)0.0705 (18)−0.0027 (12)−0.0021 (14)−0.0004 (14)
N20.0514 (15)0.0435 (14)0.0565 (16)−0.0070 (12)−0.0023 (14)0.0029 (13)
O10.0477 (12)0.0592 (15)0.0977 (19)−0.0149 (11)−0.0061 (14)−0.0009 (14)
O20.0633 (14)0.0583 (14)0.0620 (14)−0.0200 (12)−0.0142 (13)0.0013 (12)
O30.0411 (11)0.0581 (13)0.0573 (15)0.0037 (10)0.0004 (10)−0.0029 (11)
O40.0635 (18)0.130 (3)0.164 (4)−0.026 (2)−0.006 (2)0.056 (3)
C1—N11.498 (5)C10—C111.464 (6)
C1—C131.508 (6)C10—H10A0.9700
C1—C121.522 (5)C10—H10B0.9700
C1—C21.550 (5)C11—O41.381 (6)
C2—N21.488 (5)C11—H11A0.9700
C2—C151.514 (7)C11—H11B0.9700
C2—C141.520 (6)C12—H12A0.9600
C3—N21.341 (4)C12—H12B0.9600
C3—N11.346 (4)C12—H12C0.9600
C3—C41.458 (5)C13—H13A0.9600
C4—C91.381 (4)C13—H13B0.9600
C4—C51.391 (5)C13—H13C0.9600
C5—C61.352 (6)C14—H14A0.9600
C5—H50.9300C14—H14B0.9600
C6—C71.372 (6)C14—H14C0.9600
C6—H60.9300C15—H15A0.9600
C7—C81.369 (6)C15—H15B0.9600
C7—H70.9300C15—H15C0.9600
C8—C91.394 (5)N1—O11.274 (3)
C8—H80.9300N2—O21.277 (3)
C9—O31.353 (4)O4—H40.8200
C10—O31.435 (4)
N1—C1—C13109.1 (3)O4—C11—C10112.9 (4)
N1—C1—C12105.7 (4)O4—C11—H11A109.0
C13—C1—C12110.2 (4)C10—C11—H11A109.0
N1—C1—C2101.3 (3)O4—C11—H11B109.0
C13—C1—C2115.8 (4)C10—C11—H11B109.0
C12—C1—C2113.7 (3)H11A—C11—H11B107.8
N2—C2—C15105.1 (4)C1—C12—H12A109.5
N2—C2—C14107.4 (3)C1—C12—H12B109.5
C15—C2—C14113.3 (5)H12A—C12—H12B109.5
N2—C2—C1102.1 (3)C1—C12—H12C109.5
C15—C2—C1113.2 (4)H12A—C12—H12C109.5
C14—C2—C1114.6 (4)H12B—C12—H12C109.5
N2—C3—N1108.8 (3)C1—C13—H13A109.5
N2—C3—C4125.5 (3)C1—C13—H13B109.5
N1—C3—C4125.6 (3)H13A—C13—H13B109.5
C9—C4—C5119.4 (3)C1—C13—H13C109.5
C9—C4—C3120.7 (3)H13A—C13—H13C109.5
C5—C4—C3119.9 (3)H13B—C13—H13C109.5
C6—C5—C4121.1 (4)C2—C14—H14A109.5
C6—C5—H5119.4C2—C14—H14B109.5
C4—C5—H5119.4H14A—C14—H14B109.5
C5—C6—C7119.2 (4)C2—C14—H14C109.5
C5—C6—H6120.4H14A—C14—H14C109.5
C7—C6—H6120.4H14B—C14—H14C109.5
C8—C7—C6121.5 (4)C2—C15—H15A109.5
C8—C7—H7119.2C2—C15—H15B109.5
C6—C7—H7119.2H15A—C15—H15B109.5
C7—C8—C9119.3 (4)C2—C15—H15C109.5
C7—C8—H8120.4H15A—C15—H15C109.5
C9—C8—H8120.4H15B—C15—H15C109.5
O3—C9—C4116.3 (3)O1—N1—C3125.3 (3)
O3—C9—C8124.3 (3)O1—N1—C1121.7 (3)
C4—C9—C8119.3 (3)C3—N1—C1112.8 (3)
O3—C10—C11106.3 (3)O2—N2—C3125.7 (3)
O3—C10—H10A110.5O2—N2—C2121.4 (3)
C11—C10—H10A110.5C3—N2—C2112.8 (3)
O3—C10—H10B110.5C9—O3—C10119.0 (3)
C11—C10—H10B110.5C11—O4—H4109.5
H10A—C10—H10B108.7
N1—C1—C2—N2−13.7 (3)O3—C10—C11—O466.3 (5)
C13—C1—C2—N2−131.6 (3)N2—C3—N1—O1−179.0 (3)
C12—C1—C2—N299.3 (4)C4—C3—N1—O1−3.2 (5)
N1—C1—C2—C1598.7 (4)N2—C3—N1—C1−4.4 (4)
C13—C1—C2—C15−19.2 (5)C4—C3—N1—C1171.4 (3)
C12—C1—C2—C15−148.3 (5)C13—C1—N1—O1−50.7 (4)
N1—C1—C2—C14−129.4 (4)C12—C1—N1—O167.9 (4)
C13—C1—C2—C14112.7 (5)C2—C1—N1—O1−173.3 (3)
C12—C1—C2—C14−16.5 (6)C13—C1—N1—C3134.5 (3)
N2—C3—C4—C9−52.9 (4)C12—C1—N1—C3−107.0 (4)
N1—C3—C4—C9132.0 (3)C2—C1—N1—C311.9 (4)
N2—C3—C4—C5125.4 (3)N1—C3—N2—O2176.5 (3)
N1—C3—C4—C5−49.7 (4)C4—C3—N2—O20.7 (5)
C9—C4—C5—C63.1 (5)N1—C3—N2—C2−5.9 (4)
C3—C4—C5—C6−175.3 (3)C4—C3—N2—C2178.3 (3)
C4—C5—C6—C7−0.6 (6)C15—C2—N2—O272.3 (4)
C5—C6—C7—C8−1.4 (7)C14—C2—N2—O2−48.5 (5)
C6—C7—C8—C90.9 (6)C1—C2—N2—O2−169.4 (3)
C5—C4—C9—O3174.4 (3)C15—C2—N2—C3−105.4 (4)
C3—C4—C9—O3−7.2 (4)C14—C2—N2—C3133.8 (4)
C5—C4—C9—C8−3.6 (5)C1—C2—N2—C312.9 (4)
C3—C4—C9—C8174.8 (3)C4—C9—O3—C10164.8 (3)
C7—C8—C9—O3−176.2 (3)C8—C9—O3—C10−17.3 (5)
C7—C8—C9—C41.7 (5)C11—C10—O3—C9−160.6 (3)
Cg2 is the centroid of the C4–C9 ring.
D—H···AD—HH···AD···AD—H···A
C8—H8···O1i0.932.453.248 (5)143
C6—H6···O1ii0.932.503.364 (5)155
C14—H14B···Cg2iii0.963.003.513 (5)115
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C4–C9 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O1i0.932.453.248 (5)143
C6—H6⋯O1ii0.932.503.364 (5)155
C14—H14BCg2iii0.963.003.513 (5)115

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nitronyl nitroxides, a novel group of protective agents against oxidative stress in endothelial cells forming the blood-brain barrier.

Authors:  I E Blasig; K Mertsch; R F Haseloff
Journal:  Neuropharmacology       Date:  2002-11       Impact factor: 5.250

Review 3.  The chemistry and biology of nitroxide compounds.

Authors:  Benjamin P Soule; Fuminori Hyodo; Ken-Ichiro Matsumoto; Nicole L Simone; John A Cook; Murali C Krishna; James B Mitchell
Journal:  Free Radic Biol Med       Date:  2007-03-12       Impact factor: 7.376

4.  A new ferrimagnet based on a radical-substituted radical cation salt.

Authors:  Yuki Masuda; Masato Kuratsu; Shuichi Suzuki; Masatoshi Kozaki; Daisuke Shiomi; Kazunobu Sato; Takeji Takui; Yuko Hosokoshi; Xiao-Zheng Lan; Yuji Miyazaki; Akira Inaba; Keiji Okada
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  2-[3-Hy-droxy-4-(2-hy-droxy-eth-oxy)phen-yl]-4,4,5,5-tetra-methyl-2-imidazoline-1-oxyl 3-oxide.

Authors:  Hui-Ping Ma; Lin-Lin Jing; Lei He; Peng-Cheng Fan; Zheng-Ping Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-23

2.  Methyl 2-{[2-(4,4,5,5-tetra-methyl-1,3-dioxyl-4,5-dihydro-imidazol-2-yl)phen-yl]-oxy}acetate.

Authors:  Hai-Bo Wang; Lin-Lin Jing; Xiao-Li Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-23
  2 in total

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