Literature DB >> 22259465

6-Ethyl-N-methyl-3-nitro-4-nitro-methyl-4H-chromen-2-amine.

J Muthukumaran, A Parthiban, H Surya Prakash Rao, R Krishna.   

Abstract

In the title compound, C(13)H(15)N(3)O(5), the O and N atoms of the nitro-methyl group and the methyl C atom of the ethyl group are disordered over two sets of sites with refined occupancies of 0.629 (7):0.371 (7) and 0.533 (8):0.467 (8), respectively. The dihydro-pyran ring has an extremely flattened conformation. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, pairs of N-H⋯O hydrogen bonds link mol-ecules, forming inversion dimers. In addition, weak inter-molecular C-H⋯O hydrogen bonds are also present.

Entities:  

Year:  2011        PMID: 22259465      PMCID: PMC3254519          DOI: 10.1107/S1600536811053554

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological importance of 4H-chromene derivatives, see: Cai (2007 ▶, 2008 ▶); Cai et al. (2006 ▶); Gabor (1988 ▶); Brooks (1998 ▶); Hyana & Saimoto (1987 ▶); Tang et al. (2007 ▶). For related structures, see: Muthukumaran et al. (2011a ▶,b ▶,c ▶); Gayathri et al. (2006 ▶); Bhaskaran et al. (2006 ▶).

Experimental

Crystal data

C13H15N3O5 M = 293.28 Triclinic, a = 8.2538 (10) Å b = 9.0431 (9) Å c = 10.3323 (12) Å α = 73.484 (9)° β = 71.728 (11)° γ = 83.234 (9)° V = 701.75 (14) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.4 × 0.35 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.958, T max = 0.979 4281 measured reflections 2463 independent reflections 1520 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.232 S = 1.06 2463 reflections 205 parameters 122 restraints H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811053554/lh5388sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053554/lh5388Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053554/lh5388Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15N3O5Z = 2
Mr = 293.28F(000) = 308
Triclinic, P1Dx = 1.388 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2538 (10) ÅCell parameters from 1935 reflections
b = 9.0431 (9) Åθ = 2.7–29.1°
c = 10.3323 (12) ŵ = 0.11 mm1
α = 73.484 (9)°T = 293 K
β = 71.728 (11)°Block, colorless
γ = 83.234 (9)°0.4 × 0.35 × 0.2 mm
V = 701.75 (14) Å3
Oxford Diffraction Xcalibur Eos diffractometer2463 independent reflections
Radiation source: fine-focus sealed tube1520 reflections with I > 2σ(I)
graphiteRint = 0.031
Detector resolution: 15.9821 pixels mm-1θmax = 25.0°, θmin = 2.7°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −10→10
Tmin = 0.958, Tmax = 0.979l = −11→12
4281 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.232H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1377P)2 + 0.1022P] where P = (Fo2 + 2Fc2)/3
2463 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.40 e Å3
122 restraintsΔρmin = −0.34 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.4139 (2)0.2857 (3)1.1942 (2)0.0468 (6)
C10.5007 (4)0.2700 (4)1.0581 (3)0.0401 (8)
C80.6569 (4)0.4021 (4)1.1982 (3)0.0383 (8)
O20.6415 (3)0.5176 (3)1.3724 (2)0.0569 (7)
O30.8792 (3)0.5209 (3)1.2039 (2)0.0636 (8)
N20.7266 (3)0.4819 (3)1.2608 (3)0.0435 (7)
C90.4856 (4)0.3561 (4)1.2598 (3)0.0394 (8)
N10.3831 (3)0.3738 (3)1.3790 (3)0.0490 (8)
H10.42240.41671.42670.059*
C60.6684 (4)0.3088 (4)0.9922 (3)0.0380 (8)
C20.4066 (4)0.2138 (4)0.9941 (4)0.0490 (9)
H20.29350.18771.04080.059*
C50.7416 (4)0.2899 (4)0.8563 (3)0.0489 (9)
H50.85510.31510.80990.059*
C70.7700 (4)0.3607 (4)1.0681 (3)0.0413 (8)
H70.82380.45631.00440.050*
C40.6519 (5)0.2354 (4)0.7888 (4)0.0528 (9)
C30.4833 (5)0.1970 (4)0.8600 (4)0.0548 (10)
H30.42090.15920.81600.066*
C110.9145 (4)0.2466 (4)1.0924 (4)0.0588 (10)
H11A0.99640.24401.00210.071*
H11B0.97260.28041.14680.071*
N3A0.8506 (10)0.0891 (5)1.1687 (9)0.085 (2)0.629 (7)
O4A0.7196 (14)0.0755 (17)1.2654 (17)0.113 (3)0.629 (7)
O5A0.9064 (12)−0.0297 (9)1.1366 (11)0.169 (3)0.629 (7)
N3B0.8580 (16)0.0962 (10)1.1944 (16)0.085 (2)0.371 (7)
O4B0.717 (2)0.043 (3)1.240 (3)0.113 (3)0.371 (7)
O5B0.9759 (19)0.0179 (16)1.2268 (18)0.169 (3)0.371 (7)
C120.7376 (6)0.2240 (6)0.6386 (4)0.0778 (13)
H12A0.72790.32460.57510.093*0.533 (8)
H12B0.85810.20080.62770.093*0.533 (8)
H12C0.65500.25060.58570.093*0.467 (8)
H12D0.82860.29700.59320.093*0.467 (8)
C13A0.6702 (15)0.1062 (12)0.5913 (10)0.114 (3)0.533 (8)
H13A0.73340.10970.49510.171*0.533 (8)
H13B0.55170.12910.59830.171*0.533 (8)
H13C0.68280.00500.65060.171*0.533 (8)
C13B0.8100 (18)0.0627 (8)0.6369 (12)0.114 (3)0.467 (8)
H13D0.86360.05830.54110.171*0.467 (8)
H13E0.7197−0.00940.68040.171*0.467 (8)
H13F0.89290.03690.68810.171*0.467 (8)
C100.2057 (4)0.3261 (6)1.4383 (4)0.0722 (13)
H10A0.13800.39121.38250.108*
H10B0.16240.33501.53360.108*
H10C0.20010.22091.43760.108*
U11U22U33U12U13U23
O10.0348 (11)0.0592 (17)0.0485 (13)−0.0089 (10)−0.0032 (9)−0.0247 (11)
C10.0371 (16)0.041 (2)0.0445 (17)0.0043 (14)−0.0130 (14)−0.0158 (14)
C80.0367 (16)0.039 (2)0.0394 (16)−0.0034 (13)−0.0094 (13)−0.0109 (14)
O20.0646 (15)0.0694 (19)0.0409 (12)−0.0110 (13)−0.0074 (11)−0.0262 (12)
O30.0457 (14)0.085 (2)0.0667 (16)−0.0271 (13)−0.0008 (12)−0.0383 (15)
N20.0472 (16)0.0450 (18)0.0393 (14)−0.0071 (12)−0.0081 (12)−0.0155 (13)
C90.0362 (16)0.0365 (19)0.0431 (17)0.0004 (13)−0.0080 (14)−0.0114 (14)
N10.0431 (15)0.058 (2)0.0448 (15)−0.0076 (13)0.0022 (12)−0.0255 (14)
C60.0404 (17)0.0360 (19)0.0386 (16)0.0007 (13)−0.0114 (13)−0.0126 (14)
C20.0420 (18)0.050 (2)0.063 (2)0.0021 (15)−0.0210 (16)−0.0223 (18)
C50.0472 (18)0.051 (2)0.0468 (19)−0.0022 (16)−0.0073 (15)−0.0175 (16)
C70.0361 (16)0.047 (2)0.0416 (17)−0.0084 (14)−0.0050 (13)−0.0173 (15)
C40.064 (2)0.052 (2)0.0476 (19)0.0046 (17)−0.0212 (17)−0.0185 (17)
C30.066 (2)0.050 (2)0.063 (2)0.0010 (18)−0.0350 (19)−0.0208 (18)
C110.0356 (17)0.080 (3)0.074 (2)0.0052 (17)−0.0169 (16)−0.042 (2)
N3A0.075 (3)0.079 (3)0.095 (4)0.044 (2)−0.033 (2)−0.023 (2)
O4A0.131 (3)0.045 (7)0.154 (7)−0.008 (3)−0.030 (3)−0.021 (4)
O5A0.189 (6)0.098 (5)0.222 (9)0.055 (5)−0.065 (5)−0.065 (5)
N3B0.075 (3)0.079 (3)0.095 (4)0.044 (2)−0.033 (2)−0.023 (2)
O4B0.131 (3)0.045 (7)0.154 (7)−0.008 (3)−0.030 (3)−0.021 (4)
O5B0.189 (6)0.098 (5)0.222 (9)0.055 (5)−0.065 (5)−0.065 (5)
C120.100 (3)0.084 (3)0.056 (2)−0.003 (3)−0.022 (2)−0.031 (2)
C13A0.168 (10)0.096 (6)0.073 (5)−0.015 (6)0.000 (5)−0.049 (4)
C13B0.168 (10)0.096 (6)0.073 (5)−0.015 (6)0.000 (5)−0.049 (4)
C100.046 (2)0.092 (4)0.073 (3)−0.015 (2)0.0122 (19)−0.041 (2)
O1—C91.342 (4)C11—N3B1.4847 (11)
O1—C11.403 (3)C11—N3A1.4847 (11)
C1—C61.375 (4)C11—H11A0.9700
C1—C21.380 (4)C11—H11B0.9700
C8—N21.366 (4)N3A—O4A1.2113 (11)
C8—C91.414 (4)N3A—O5A1.2115 (11)
C8—C71.496 (4)N3B—O4B1.2114 (11)
O2—N21.256 (3)N3B—O5B1.2117 (11)
O3—N21.256 (3)C12—C13B1.5122 (11)
C9—N11.298 (4)C12—C13A1.5125 (11)
N1—C101.463 (4)C12—H12A0.9700
N1—H10.8600C12—H12B0.9700
C6—C51.395 (4)C12—H12C0.9700
C6—C71.501 (4)C12—H12D0.9700
C2—C31.376 (5)C13A—H13A0.9600
C2—H20.9300C13A—H13B0.9600
C5—C41.372 (5)C13A—H13C0.9600
C5—H50.9300C13B—H13D0.9600
C7—C111.517 (5)C13B—H13E0.9600
C7—H70.9800C13B—H13F0.9600
C4—C31.387 (5)C10—H10A0.9600
C4—C121.518 (5)C10—H10B0.9600
C3—H30.9300C10—H10C0.9600
C9—O1—C1120.9 (2)O4A—N3A—O5A114.3 (8)
C6—C1—C2122.1 (3)O4A—N3A—C11118.5 (9)
C6—C1—O1122.2 (3)O5A—N3A—C11126.8 (8)
C2—C1—O1115.7 (3)O4B—N3B—O5B118.9 (19)
N2—C8—C9120.1 (3)O4B—N3B—C11128.9 (19)
N2—C8—C7117.6 (2)O5B—N3B—C11112.1 (11)
C9—C8—C7122.2 (3)C13B—C12—C13A53.2 (7)
O3—N2—O2119.8 (3)C13B—C12—C4110.9 (5)
O3—N2—C8118.7 (2)C13A—C12—C4116.9 (5)
O2—N2—C8121.5 (3)C13B—C12—H12A141.0
N1—C9—O1113.2 (3)C13A—C12—H12A108.1
N1—C9—C8126.7 (3)C4—C12—H12A108.1
O1—C9—C8120.1 (3)C13B—C12—H12B59.8
C9—N1—C10125.0 (3)C13A—C12—H12B108.1
C9—N1—H1117.5C4—C12—H12B108.1
C10—N1—H1117.5H12A—C12—H12B107.3
C1—C6—C5117.5 (3)C13B—C12—H12C109.5
C1—C6—C7120.6 (3)C13A—C12—H12C57.4
C5—C6—C7121.8 (3)C4—C12—H12C109.5
C3—C2—C1118.7 (3)H12A—C12—H12C56.1
C3—C2—H2120.6H12B—C12—H12C142.2
C1—C2—H2120.6C13B—C12—H12D109.5
C4—C5—C6122.2 (3)C13A—C12—H12D133.6
C4—C5—H5118.9C4—C12—H12D109.5
C6—C5—H5118.9H12A—C12—H12D55.3
C8—C7—C6111.4 (2)H12B—C12—H12D53.9
C8—C7—C11114.3 (3)H12C—C12—H12D108.0
C6—C7—C11111.6 (3)C12—C13A—H13A109.5
C8—C7—H7106.3C12—C13A—H13B109.5
C6—C7—H7106.3H13A—C13A—H13B109.5
C11—C7—H7106.3C12—C13A—H13C109.5
C5—C4—C3118.2 (3)H13A—C13A—H13C109.5
C5—C4—C12119.3 (3)H13B—C13A—H13C109.5
C3—C4—C12122.5 (3)C12—C13B—H13D109.5
C2—C3—C4121.4 (3)C12—C13B—H13E109.5
C2—C3—H3119.3H13D—C13B—H13E109.5
C4—C3—H3119.3C12—C13B—H13F109.5
N3B—C11—C7114.4 (6)H13D—C13B—H13F109.5
N3A—C11—C7111.4 (4)H13E—C13B—H13F109.5
N3B—C11—H11A117.3N1—C10—H10A109.5
N3A—C11—H11A109.3N1—C10—H10B109.5
C7—C11—H11A109.3H10A—C10—H10B109.5
N3B—C11—H11B97.5N1—C10—H10C109.5
N3A—C11—H11B109.3H10A—C10—H10C109.5
C7—C11—H11B109.3H10B—C10—H10C109.5
H11A—C11—H11B108.0
C9—O1—C1—C67.7 (5)C1—C6—C7—C8−14.8 (4)
C9—O1—C1—C2−172.0 (3)C5—C6—C7—C8168.7 (3)
C9—C8—N2—O3179.8 (3)C1—C6—C7—C11114.3 (3)
C7—C8—N2—O32.4 (4)C5—C6—C7—C11−62.2 (4)
C9—C8—N2—O2−0.7 (5)C6—C5—C4—C3−0.6 (5)
C7—C8—N2—O2−178.2 (3)C6—C5—C4—C12177.5 (3)
C1—O1—C9—N1174.0 (3)C1—C2—C3—C40.0 (5)
C1—O1—C9—C8−6.3 (4)C5—C4—C3—C20.4 (6)
N2—C8—C9—N1−4.2 (5)C12—C4—C3—C2−177.5 (4)
C7—C8—C9—N1173.1 (3)C8—C7—C11—N3B59.4 (9)
N2—C8—C9—O1176.1 (3)C6—C7—C11—N3B−68.2 (9)
C7—C8—C9—O1−6.6 (5)C8—C7—C11—N3A72.3 (5)
O1—C9—N1—C10−1.1 (5)C6—C7—C11—N3A−55.3 (5)
C8—C9—N1—C10179.2 (4)N3B—C11—N3A—O4A65 (4)
C2—C1—C6—C50.3 (5)C7—C11—N3A—O4A−41.2 (12)
O1—C1—C6—C5−179.4 (3)N3B—C11—N3A—O5A−123 (4)
C2—C1—C6—C7−176.3 (3)C7—C11—N3A—O5A131.0 (10)
O1—C1—C6—C74.0 (5)N3A—C11—N3B—O4B−64 (4)
C6—C1—C2—C3−0.4 (5)C7—C11—N3B—O4B15 (2)
O1—C1—C2—C3179.3 (3)N3A—C11—N3B—O5B112 (4)
C1—C6—C5—C40.2 (5)C7—C11—N3B—O5B−169.6 (13)
C7—C6—C5—C4176.8 (3)C5—C4—C12—C13B96.2 (7)
N2—C8—C7—C6−166.3 (3)C3—C4—C12—C13B−85.9 (8)
C9—C8—C7—C616.4 (4)C5—C4—C12—C13A154.5 (7)
N2—C8—C7—C1166.0 (4)C3—C4—C12—C13A−27.5 (8)
C9—C8—C7—C11−111.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.861.972.600 (3)129
N1—H1···O2i0.862.212.943 (4)143
C11—H11A···O3ii0.972.583.258 (4)128
C12—H12A···O2iii0.972.553.457 (5)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.861.972.600 (3)129
N1—H1⋯O2i0.862.212.943 (4)143
C11—H11A⋯O3ii0.972.583.258 (4)128
C12—H12A⋯O2iii0.972.553.457 (5)156

Symmetry codes: (i) ; (ii) ; (iii) .

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