| Literature DB >> 22259465 |
J Muthukumaran, A Parthiban, H Surya Prakash Rao, R Krishna.
Abstract
In the title compound, C(13)H(15)N(3)O(5), the O and N atoms of the nitro-methyl group and the methyl C atom of the ethyl group are disordered over two sets of sites with refined occupancies of 0.629 (7):0.371 (7) and 0.533 (8):0.467 (8), respectively. The dihydro-pyran ring has an extremely flattened conformation. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, pairs of N-H⋯O hydrogen bonds link mol-ecules, forming inversion dimers. In addition, weak inter-molecular C-H⋯O hydrogen bonds are also present.Entities:
Year: 2011 PMID: 22259465 PMCID: PMC3254519 DOI: 10.1107/S1600536811053554
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H15N3O5 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1935 reflections | |
| θ = 2.7–29.1° | |
| µ = 0.11 mm−1 | |
| α = 73.484 (9)° | |
| β = 71.728 (11)° | Block, colorless |
| γ = 83.234 (9)° | 0.4 × 0.35 × 0.2 mm |
| Oxford Diffraction Xcalibur Eos diffractometer | 2463 independent reflections |
| Radiation source: fine-focus sealed tube | 1520 reflections with |
| graphite | |
| Detector resolution: 15.9821 pixels mm-1 | θmax = 25.0°, θmin = 2.7° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4281 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2463 reflections | (Δ/σ)max < 0.001 |
| 205 parameters | Δρmax = 0.40 e Å−3 |
| 122 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.4139 (2) | 0.2857 (3) | 1.1942 (2) | 0.0468 (6) | |
| C1 | 0.5007 (4) | 0.2700 (4) | 1.0581 (3) | 0.0401 (8) | |
| C8 | 0.6569 (4) | 0.4021 (4) | 1.1982 (3) | 0.0383 (8) | |
| O2 | 0.6415 (3) | 0.5176 (3) | 1.3724 (2) | 0.0569 (7) | |
| O3 | 0.8792 (3) | 0.5209 (3) | 1.2039 (2) | 0.0636 (8) | |
| N2 | 0.7266 (3) | 0.4819 (3) | 1.2608 (3) | 0.0435 (7) | |
| C9 | 0.4856 (4) | 0.3561 (4) | 1.2598 (3) | 0.0394 (8) | |
| N1 | 0.3831 (3) | 0.3738 (3) | 1.3790 (3) | 0.0490 (8) | |
| H1 | 0.4224 | 0.4167 | 1.4267 | 0.059* | |
| C6 | 0.6684 (4) | 0.3088 (4) | 0.9922 (3) | 0.0380 (8) | |
| C2 | 0.4066 (4) | 0.2138 (4) | 0.9941 (4) | 0.0490 (9) | |
| H2 | 0.2935 | 0.1877 | 1.0408 | 0.059* | |
| C5 | 0.7416 (4) | 0.2899 (4) | 0.8563 (3) | 0.0489 (9) | |
| H5 | 0.8551 | 0.3151 | 0.8099 | 0.059* | |
| C7 | 0.7700 (4) | 0.3607 (4) | 1.0681 (3) | 0.0413 (8) | |
| H7 | 0.8238 | 0.4563 | 1.0044 | 0.050* | |
| C4 | 0.6519 (5) | 0.2354 (4) | 0.7888 (4) | 0.0528 (9) | |
| C3 | 0.4833 (5) | 0.1970 (4) | 0.8600 (4) | 0.0548 (10) | |
| H3 | 0.4209 | 0.1592 | 0.8160 | 0.066* | |
| C11 | 0.9145 (4) | 0.2466 (4) | 1.0924 (4) | 0.0588 (10) | |
| H11A | 0.9964 | 0.2440 | 1.0021 | 0.071* | |
| H11B | 0.9726 | 0.2804 | 1.1468 | 0.071* | |
| N3A | 0.8506 (10) | 0.0891 (5) | 1.1687 (9) | 0.085 (2) | 0.629 (7) |
| O4A | 0.7196 (14) | 0.0755 (17) | 1.2654 (17) | 0.113 (3) | 0.629 (7) |
| O5A | 0.9064 (12) | −0.0297 (9) | 1.1366 (11) | 0.169 (3) | 0.629 (7) |
| N3B | 0.8580 (16) | 0.0962 (10) | 1.1944 (16) | 0.085 (2) | 0.371 (7) |
| O4B | 0.717 (2) | 0.043 (3) | 1.240 (3) | 0.113 (3) | 0.371 (7) |
| O5B | 0.9759 (19) | 0.0179 (16) | 1.2268 (18) | 0.169 (3) | 0.371 (7) |
| C12 | 0.7376 (6) | 0.2240 (6) | 0.6386 (4) | 0.0778 (13) | |
| H12A | 0.7279 | 0.3246 | 0.5751 | 0.093* | 0.533 (8) |
| H12B | 0.8581 | 0.2008 | 0.6277 | 0.093* | 0.533 (8) |
| H12C | 0.6550 | 0.2506 | 0.5857 | 0.093* | 0.467 (8) |
| H12D | 0.8286 | 0.2970 | 0.5932 | 0.093* | 0.467 (8) |
| C13A | 0.6702 (15) | 0.1062 (12) | 0.5913 (10) | 0.114 (3) | 0.533 (8) |
| H13A | 0.7334 | 0.1097 | 0.4951 | 0.171* | 0.533 (8) |
| H13B | 0.5517 | 0.1291 | 0.5983 | 0.171* | 0.533 (8) |
| H13C | 0.6828 | 0.0050 | 0.6506 | 0.171* | 0.533 (8) |
| C13B | 0.8100 (18) | 0.0627 (8) | 0.6369 (12) | 0.114 (3) | 0.467 (8) |
| H13D | 0.8636 | 0.0583 | 0.5411 | 0.171* | 0.467 (8) |
| H13E | 0.7197 | −0.0094 | 0.6804 | 0.171* | 0.467 (8) |
| H13F | 0.8929 | 0.0369 | 0.6881 | 0.171* | 0.467 (8) |
| C10 | 0.2057 (4) | 0.3261 (6) | 1.4383 (4) | 0.0722 (13) | |
| H10A | 0.1380 | 0.3912 | 1.3825 | 0.108* | |
| H10B | 0.1624 | 0.3350 | 1.5336 | 0.108* | |
| H10C | 0.2001 | 0.2209 | 1.4376 | 0.108* |
| O1 | 0.0348 (11) | 0.0592 (17) | 0.0485 (13) | −0.0089 (10) | −0.0032 (9) | −0.0247 (11) |
| C1 | 0.0371 (16) | 0.041 (2) | 0.0445 (17) | 0.0043 (14) | −0.0130 (14) | −0.0158 (14) |
| C8 | 0.0367 (16) | 0.039 (2) | 0.0394 (16) | −0.0034 (13) | −0.0094 (13) | −0.0109 (14) |
| O2 | 0.0646 (15) | 0.0694 (19) | 0.0409 (12) | −0.0110 (13) | −0.0074 (11) | −0.0262 (12) |
| O3 | 0.0457 (14) | 0.085 (2) | 0.0667 (16) | −0.0271 (13) | −0.0008 (12) | −0.0383 (15) |
| N2 | 0.0472 (16) | 0.0450 (18) | 0.0393 (14) | −0.0071 (12) | −0.0081 (12) | −0.0155 (13) |
| C9 | 0.0362 (16) | 0.0365 (19) | 0.0431 (17) | 0.0004 (13) | −0.0080 (14) | −0.0114 (14) |
| N1 | 0.0431 (15) | 0.058 (2) | 0.0448 (15) | −0.0076 (13) | 0.0022 (12) | −0.0255 (14) |
| C6 | 0.0404 (17) | 0.0360 (19) | 0.0386 (16) | 0.0007 (13) | −0.0114 (13) | −0.0126 (14) |
| C2 | 0.0420 (18) | 0.050 (2) | 0.063 (2) | 0.0021 (15) | −0.0210 (16) | −0.0223 (18) |
| C5 | 0.0472 (18) | 0.051 (2) | 0.0468 (19) | −0.0022 (16) | −0.0073 (15) | −0.0175 (16) |
| C7 | 0.0361 (16) | 0.047 (2) | 0.0416 (17) | −0.0084 (14) | −0.0050 (13) | −0.0173 (15) |
| C4 | 0.064 (2) | 0.052 (2) | 0.0476 (19) | 0.0046 (17) | −0.0212 (17) | −0.0185 (17) |
| C3 | 0.066 (2) | 0.050 (2) | 0.063 (2) | 0.0010 (18) | −0.0350 (19) | −0.0208 (18) |
| C11 | 0.0356 (17) | 0.080 (3) | 0.074 (2) | 0.0052 (17) | −0.0169 (16) | −0.042 (2) |
| N3A | 0.075 (3) | 0.079 (3) | 0.095 (4) | 0.044 (2) | −0.033 (2) | −0.023 (2) |
| O4A | 0.131 (3) | 0.045 (7) | 0.154 (7) | −0.008 (3) | −0.030 (3) | −0.021 (4) |
| O5A | 0.189 (6) | 0.098 (5) | 0.222 (9) | 0.055 (5) | −0.065 (5) | −0.065 (5) |
| N3B | 0.075 (3) | 0.079 (3) | 0.095 (4) | 0.044 (2) | −0.033 (2) | −0.023 (2) |
| O4B | 0.131 (3) | 0.045 (7) | 0.154 (7) | −0.008 (3) | −0.030 (3) | −0.021 (4) |
| O5B | 0.189 (6) | 0.098 (5) | 0.222 (9) | 0.055 (5) | −0.065 (5) | −0.065 (5) |
| C12 | 0.100 (3) | 0.084 (3) | 0.056 (2) | −0.003 (3) | −0.022 (2) | −0.031 (2) |
| C13A | 0.168 (10) | 0.096 (6) | 0.073 (5) | −0.015 (6) | 0.000 (5) | −0.049 (4) |
| C13B | 0.168 (10) | 0.096 (6) | 0.073 (5) | −0.015 (6) | 0.000 (5) | −0.049 (4) |
| C10 | 0.046 (2) | 0.092 (4) | 0.073 (3) | −0.015 (2) | 0.0122 (19) | −0.041 (2) |
| O1—C9 | 1.342 (4) | C11—N3B | 1.4847 (11) |
| O1—C1 | 1.403 (3) | C11—N3A | 1.4847 (11) |
| C1—C6 | 1.375 (4) | C11—H11A | 0.9700 |
| C1—C2 | 1.380 (4) | C11—H11B | 0.9700 |
| C8—N2 | 1.366 (4) | N3A—O4A | 1.2113 (11) |
| C8—C9 | 1.414 (4) | N3A—O5A | 1.2115 (11) |
| C8—C7 | 1.496 (4) | N3B—O4B | 1.2114 (11) |
| O2—N2 | 1.256 (3) | N3B—O5B | 1.2117 (11) |
| O3—N2 | 1.256 (3) | C12—C13B | 1.5122 (11) |
| C9—N1 | 1.298 (4) | C12—C13A | 1.5125 (11) |
| N1—C10 | 1.463 (4) | C12—H12A | 0.9700 |
| N1—H1 | 0.8600 | C12—H12B | 0.9700 |
| C6—C5 | 1.395 (4) | C12—H12C | 0.9700 |
| C6—C7 | 1.501 (4) | C12—H12D | 0.9700 |
| C2—C3 | 1.376 (5) | C13A—H13A | 0.9600 |
| C2—H2 | 0.9300 | C13A—H13B | 0.9600 |
| C5—C4 | 1.372 (5) | C13A—H13C | 0.9600 |
| C5—H5 | 0.9300 | C13B—H13D | 0.9600 |
| C7—C11 | 1.517 (5) | C13B—H13E | 0.9600 |
| C7—H7 | 0.9800 | C13B—H13F | 0.9600 |
| C4—C3 | 1.387 (5) | C10—H10A | 0.9600 |
| C4—C12 | 1.518 (5) | C10—H10B | 0.9600 |
| C3—H3 | 0.9300 | C10—H10C | 0.9600 |
| C9—O1—C1 | 120.9 (2) | O4A—N3A—O5A | 114.3 (8) |
| C6—C1—C2 | 122.1 (3) | O4A—N3A—C11 | 118.5 (9) |
| C6—C1—O1 | 122.2 (3) | O5A—N3A—C11 | 126.8 (8) |
| C2—C1—O1 | 115.7 (3) | O4B—N3B—O5B | 118.9 (19) |
| N2—C8—C9 | 120.1 (3) | O4B—N3B—C11 | 128.9 (19) |
| N2—C8—C7 | 117.6 (2) | O5B—N3B—C11 | 112.1 (11) |
| C9—C8—C7 | 122.2 (3) | C13B—C12—C13A | 53.2 (7) |
| O3—N2—O2 | 119.8 (3) | C13B—C12—C4 | 110.9 (5) |
| O3—N2—C8 | 118.7 (2) | C13A—C12—C4 | 116.9 (5) |
| O2—N2—C8 | 121.5 (3) | C13B—C12—H12A | 141.0 |
| N1—C9—O1 | 113.2 (3) | C13A—C12—H12A | 108.1 |
| N1—C9—C8 | 126.7 (3) | C4—C12—H12A | 108.1 |
| O1—C9—C8 | 120.1 (3) | C13B—C12—H12B | 59.8 |
| C9—N1—C10 | 125.0 (3) | C13A—C12—H12B | 108.1 |
| C9—N1—H1 | 117.5 | C4—C12—H12B | 108.1 |
| C10—N1—H1 | 117.5 | H12A—C12—H12B | 107.3 |
| C1—C6—C5 | 117.5 (3) | C13B—C12—H12C | 109.5 |
| C1—C6—C7 | 120.6 (3) | C13A—C12—H12C | 57.4 |
| C5—C6—C7 | 121.8 (3) | C4—C12—H12C | 109.5 |
| C3—C2—C1 | 118.7 (3) | H12A—C12—H12C | 56.1 |
| C3—C2—H2 | 120.6 | H12B—C12—H12C | 142.2 |
| C1—C2—H2 | 120.6 | C13B—C12—H12D | 109.5 |
| C4—C5—C6 | 122.2 (3) | C13A—C12—H12D | 133.6 |
| C4—C5—H5 | 118.9 | C4—C12—H12D | 109.5 |
| C6—C5—H5 | 118.9 | H12A—C12—H12D | 55.3 |
| C8—C7—C6 | 111.4 (2) | H12B—C12—H12D | 53.9 |
| C8—C7—C11 | 114.3 (3) | H12C—C12—H12D | 108.0 |
| C6—C7—C11 | 111.6 (3) | C12—C13A—H13A | 109.5 |
| C8—C7—H7 | 106.3 | C12—C13A—H13B | 109.5 |
| C6—C7—H7 | 106.3 | H13A—C13A—H13B | 109.5 |
| C11—C7—H7 | 106.3 | C12—C13A—H13C | 109.5 |
| C5—C4—C3 | 118.2 (3) | H13A—C13A—H13C | 109.5 |
| C5—C4—C12 | 119.3 (3) | H13B—C13A—H13C | 109.5 |
| C3—C4—C12 | 122.5 (3) | C12—C13B—H13D | 109.5 |
| C2—C3—C4 | 121.4 (3) | C12—C13B—H13E | 109.5 |
| C2—C3—H3 | 119.3 | H13D—C13B—H13E | 109.5 |
| C4—C3—H3 | 119.3 | C12—C13B—H13F | 109.5 |
| N3B—C11—C7 | 114.4 (6) | H13D—C13B—H13F | 109.5 |
| N3A—C11—C7 | 111.4 (4) | H13E—C13B—H13F | 109.5 |
| N3B—C11—H11A | 117.3 | N1—C10—H10A | 109.5 |
| N3A—C11—H11A | 109.3 | N1—C10—H10B | 109.5 |
| C7—C11—H11A | 109.3 | H10A—C10—H10B | 109.5 |
| N3B—C11—H11B | 97.5 | N1—C10—H10C | 109.5 |
| N3A—C11—H11B | 109.3 | H10A—C10—H10C | 109.5 |
| C7—C11—H11B | 109.3 | H10B—C10—H10C | 109.5 |
| H11A—C11—H11B | 108.0 | ||
| C9—O1—C1—C6 | 7.7 (5) | C1—C6—C7—C8 | −14.8 (4) |
| C9—O1—C1—C2 | −172.0 (3) | C5—C6—C7—C8 | 168.7 (3) |
| C9—C8—N2—O3 | 179.8 (3) | C1—C6—C7—C11 | 114.3 (3) |
| C7—C8—N2—O3 | 2.4 (4) | C5—C6—C7—C11 | −62.2 (4) |
| C9—C8—N2—O2 | −0.7 (5) | C6—C5—C4—C3 | −0.6 (5) |
| C7—C8—N2—O2 | −178.2 (3) | C6—C5—C4—C12 | 177.5 (3) |
| C1—O1—C9—N1 | 174.0 (3) | C1—C2—C3—C4 | 0.0 (5) |
| C1—O1—C9—C8 | −6.3 (4) | C5—C4—C3—C2 | 0.4 (6) |
| N2—C8—C9—N1 | −4.2 (5) | C12—C4—C3—C2 | −177.5 (4) |
| C7—C8—C9—N1 | 173.1 (3) | C8—C7—C11—N3B | 59.4 (9) |
| N2—C8—C9—O1 | 176.1 (3) | C6—C7—C11—N3B | −68.2 (9) |
| C7—C8—C9—O1 | −6.6 (5) | C8—C7—C11—N3A | 72.3 (5) |
| O1—C9—N1—C10 | −1.1 (5) | C6—C7—C11—N3A | −55.3 (5) |
| C8—C9—N1—C10 | 179.2 (4) | N3B—C11—N3A—O4A | 65 (4) |
| C2—C1—C6—C5 | 0.3 (5) | C7—C11—N3A—O4A | −41.2 (12) |
| O1—C1—C6—C5 | −179.4 (3) | N3B—C11—N3A—O5A | −123 (4) |
| C2—C1—C6—C7 | −176.3 (3) | C7—C11—N3A—O5A | 131.0 (10) |
| O1—C1—C6—C7 | 4.0 (5) | N3A—C11—N3B—O4B | −64 (4) |
| C6—C1—C2—C3 | −0.4 (5) | C7—C11—N3B—O4B | 15 (2) |
| O1—C1—C2—C3 | 179.3 (3) | N3A—C11—N3B—O5B | 112 (4) |
| C1—C6—C5—C4 | 0.2 (5) | C7—C11—N3B—O5B | −169.6 (13) |
| C7—C6—C5—C4 | 176.8 (3) | C5—C4—C12—C13B | 96.2 (7) |
| N2—C8—C7—C6 | −166.3 (3) | C3—C4—C12—C13B | −85.9 (8) |
| C9—C8—C7—C6 | 16.4 (4) | C5—C4—C12—C13A | 154.5 (7) |
| N2—C8—C7—C11 | 66.0 (4) | C3—C4—C12—C13A | −27.5 (8) |
| C9—C8—C7—C11 | −111.3 (3) |
| H··· | ||||
| N1—H1···O2 | 0.86 | 1.97 | 2.600 (3) | 129 |
| N1—H1···O2i | 0.86 | 2.21 | 2.943 (4) | 143 |
| C11—H11A···O3ii | 0.97 | 2.58 | 3.258 (4) | 128 |
| C12—H12A···O2iii | 0.97 | 2.55 | 3.457 (5) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O2 | 0.86 | 1.97 | 2.600 (3) | 129 |
| N1—H1⋯O2i | 0.86 | 2.21 | 2.943 (4) | 143 |
| C11—H11 | 0.97 | 2.58 | 3.258 (4) | 128 |
| C12—H12 | 0.97 | 2.55 | 3.457 (5) | 156 |
Symmetry codes: (i) ; (ii) ; (iii) .