| Literature DB >> 21754559 |
J Muthukumaran, A Parthiban, P Manivel, H Surya Prakash Rao, R Krishna.
Abstract
In the title compound, C(12)H(13)N(3)O(6), the dihydro-pyran ring adopts a near screw-boat conformation. The dihedral angle between the mean planes of the benzene and dihydro-pyran rings is 6.35 (5)°. An intra-molecular N-H⋯O hydrogen bond generates an S(6) motif, which stabilizes the mol-ecular conformation. In the crystal, weak inter-molecular C-H⋯O, N-H⋯O and C-H⋯π hydrogen bonds contribute to the stabilization of the packing.Entities:
Year: 2011 PMID: 21754559 PMCID: PMC3089089 DOI: 10.1107/S1600536811015595
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H13N3O6 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7594 reflections |
| θ = 3.0–29.3° | |
| µ = 0.12 mm−1 | |
| β = 90.777 (2)° | Block, colorless |
| 0.4 × 0.4 × 0.2 mm | |
| Oxford Diffraction Xcalibur Eos diffractometer | 2256 independent reflections |
| Radiation source: fine-focus sealed tube | 1804 reflections with |
| graphite | |
| Detector resolution: 15.9821 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 13856 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2256 reflections | (Δ/σ)max = 0.015 |
| 192 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.2620 (2) | 0.61723 (15) | −0.00254 (7) | 0.0299 (4) | |
| C2 | 0.2708 (2) | 0.58244 (17) | −0.06949 (8) | 0.0337 (4) | |
| H2 | 0.2594 | 0.4884 | −0.0830 | 0.040* | |
| C3 | 0.2967 (2) | 0.68797 (18) | −0.11657 (8) | 0.0356 (4) | |
| H3 | 0.3019 | 0.6656 | −0.1620 | 0.043* | |
| C4 | 0.3149 (2) | 0.82767 (17) | −0.09555 (8) | 0.0335 (4) | |
| C5 | 0.3093 (2) | 0.85951 (17) | −0.02791 (7) | 0.0329 (4) | |
| H5 | 0.3239 | 0.9532 | −0.0142 | 0.039* | |
| C6 | 0.2826 (2) | 0.75487 (16) | 0.01994 (7) | 0.0297 (4) | |
| C7 | 0.2766 (2) | 0.78954 (16) | 0.09386 (7) | 0.0323 (4) | |
| H7 | 0.3939 | 0.8453 | 0.1045 | 0.039* | |
| C8 | 0.2891 (2) | 0.65553 (16) | 0.13472 (7) | 0.0310 (4) | |
| C9 | 0.2506 (2) | 0.52117 (16) | 0.10765 (7) | 0.0289 (4) | |
| C10 | 0.2007 (2) | 0.26444 (16) | 0.10926 (9) | 0.0379 (4) | |
| H10A | 0.0798 | 0.2655 | 0.0842 | 0.057* | |
| H10B | 0.1950 | 0.1928 | 0.1434 | 0.057* | |
| H10C | 0.3067 | 0.2442 | 0.0796 | 0.057* | |
| C11 | 0.0974 (3) | 0.88254 (16) | 0.11164 (8) | 0.0379 (4) | |
| H11A | 0.1119 | 0.9171 | 0.1573 | 0.046* | |
| H11B | 0.0916 | 0.9638 | 0.0819 | 0.046* | |
| C12 | 0.3430 (3) | 0.9162 (2) | −0.20753 (8) | 0.0543 (5) | |
| H12A | 0.4498 | 0.8543 | −0.2180 | 0.081* | |
| H12B | 0.3585 | 1.0045 | −0.2308 | 0.081* | |
| H12C | 0.2219 | 0.8728 | −0.2213 | 0.081* | |
| N1 | 0.2318 (2) | 0.40166 (13) | 0.14032 (6) | 0.0336 (3) | |
| H1 | 0.2383 | 0.4048 | 0.1834 | 0.040* | |
| N2 | 0.3329 (2) | 0.67051 (14) | 0.20171 (6) | 0.0356 (3) | |
| N3 | −0.0864 (2) | 0.80035 (15) | 0.10518 (7) | 0.0411 (4) | |
| O1 | 0.22704 (16) | 0.50418 (11) | 0.04132 (5) | 0.0358 (3) | |
| O2 | 0.3398 (2) | 0.56472 (13) | 0.24035 (5) | 0.0496 (4) | |
| O3 | 0.3669 (2) | 0.79190 (12) | 0.22406 (6) | 0.0484 (4) | |
| O4 | −0.1438 (2) | 0.73633 (16) | 0.15375 (8) | 0.0703 (5) | |
| O5 | −0.1686 (2) | 0.79552 (16) | 0.05057 (7) | 0.0641 (4) | |
| O6 | 0.34105 (19) | 0.94142 (13) | −0.13716 (6) | 0.0486 (4) |
| C1 | 0.0314 (8) | 0.0310 (8) | 0.0272 (8) | −0.0014 (6) | 0.0001 (6) | 0.0012 (7) |
| C2 | 0.0359 (9) | 0.0344 (9) | 0.0307 (9) | −0.0006 (7) | 0.0012 (7) | −0.0079 (7) |
| C3 | 0.0352 (9) | 0.0487 (10) | 0.0230 (8) | −0.0021 (7) | 0.0032 (7) | −0.0045 (7) |
| C4 | 0.0309 (8) | 0.0418 (9) | 0.0280 (8) | −0.0032 (7) | 0.0031 (6) | 0.0049 (7) |
| C5 | 0.0366 (9) | 0.0321 (8) | 0.0299 (8) | −0.0033 (7) | 0.0004 (7) | 0.0001 (7) |
| C6 | 0.0321 (8) | 0.0318 (8) | 0.0253 (8) | −0.0015 (6) | 0.0000 (6) | −0.0011 (6) |
| C7 | 0.0439 (9) | 0.0280 (8) | 0.0250 (8) | −0.0055 (7) | −0.0029 (7) | −0.0021 (6) |
| C8 | 0.0381 (9) | 0.0309 (8) | 0.0238 (8) | −0.0002 (7) | −0.0020 (6) | −0.0013 (6) |
| C9 | 0.0297 (8) | 0.0318 (8) | 0.0253 (8) | 0.0030 (6) | −0.0003 (6) | −0.0002 (6) |
| C10 | 0.0427 (10) | 0.0285 (9) | 0.0424 (10) | −0.0002 (7) | −0.0050 (8) | −0.0008 (7) |
| C11 | 0.0610 (11) | 0.0249 (8) | 0.0278 (9) | 0.0013 (7) | −0.0020 (7) | −0.0042 (7) |
| C12 | 0.0661 (13) | 0.0703 (14) | 0.0267 (9) | −0.0128 (10) | 0.0045 (8) | 0.0082 (9) |
| N1 | 0.0443 (8) | 0.0296 (7) | 0.0270 (7) | 0.0007 (6) | −0.0005 (6) | −0.0001 (6) |
| N2 | 0.0455 (8) | 0.0358 (8) | 0.0254 (7) | −0.0029 (6) | −0.0042 (6) | −0.0010 (6) |
| N3 | 0.0534 (9) | 0.0347 (8) | 0.0353 (9) | 0.0109 (6) | 0.0022 (7) | −0.0042 (7) |
| O1 | 0.0538 (7) | 0.0289 (6) | 0.0244 (6) | −0.0057 (5) | −0.0031 (5) | −0.0018 (4) |
| O2 | 0.0772 (9) | 0.0417 (7) | 0.0297 (7) | −0.0045 (6) | −0.0105 (6) | 0.0074 (5) |
| O3 | 0.0775 (9) | 0.0378 (7) | 0.0297 (7) | −0.0097 (6) | −0.0054 (6) | −0.0087 (5) |
| O4 | 0.0762 (10) | 0.0754 (10) | 0.0597 (9) | −0.0071 (8) | 0.0115 (8) | 0.0222 (8) |
| O5 | 0.0679 (10) | 0.0781 (10) | 0.0460 (8) | 0.0039 (7) | −0.0138 (7) | −0.0154 (7) |
| O6 | 0.0696 (9) | 0.0479 (7) | 0.0285 (6) | −0.0079 (6) | 0.0065 (6) | 0.0080 (5) |
| C1—C2 | 1.376 (2) | C9—O1 | 1.3394 (17) |
| C1—C6 | 1.381 (2) | C10—N1 | 1.4496 (19) |
| C1—O1 | 1.4019 (17) | C10—H10A | 0.9600 |
| C2—C3 | 1.381 (2) | C10—H10B | 0.9600 |
| C2—H2 | 0.9300 | C10—H10C | 0.9600 |
| C3—C4 | 1.388 (2) | C11—N3 | 1.480 (2) |
| C3—H3 | 0.9300 | C11—H11A | 0.9700 |
| C4—O6 | 1.3696 (19) | C11—H11B | 0.9700 |
| C4—C5 | 1.382 (2) | C12—O6 | 1.423 (2) |
| C5—C6 | 1.387 (2) | C12—H12A | 0.9600 |
| C5—H5 | 0.9300 | C12—H12B | 0.9600 |
| C6—C7 | 1.511 (2) | C12—H12C | 0.9600 |
| C7—C8 | 1.506 (2) | N1—H1 | 0.8600 |
| C7—C11 | 1.551 (2) | N2—O3 | 1.2497 (17) |
| C7—H7 | 0.9800 | N2—O2 | 1.2613 (16) |
| C8—N2 | 1.3719 (19) | N3—O4 | 1.2111 (18) |
| C8—C9 | 1.401 (2) | N3—O5 | 1.2191 (19) |
| C9—N1 | 1.3095 (19) | ||
| C2—C1—C6 | 122.24 (14) | N1—C10—H10A | 109.5 |
| C2—C1—O1 | 115.67 (13) | N1—C10—H10B | 109.5 |
| C6—C1—O1 | 122.07 (13) | H10A—C10—H10B | 109.5 |
| C1—C2—C3 | 119.63 (14) | N1—C10—H10C | 109.5 |
| C1—C2—H2 | 120.2 | H10A—C10—H10C | 109.5 |
| C3—C2—H2 | 120.2 | H10B—C10—H10C | 109.5 |
| C2—C3—C4 | 119.43 (14) | N3—C11—C7 | 110.81 (12) |
| C2—C3—H3 | 120.3 | N3—C11—H11A | 109.5 |
| C4—C3—H3 | 120.3 | C7—C11—H11A | 109.5 |
| O6—C4—C5 | 115.20 (14) | N3—C11—H11B | 109.5 |
| O6—C4—C3 | 124.98 (14) | C7—C11—H11B | 109.5 |
| C5—C4—C3 | 119.81 (14) | H11A—C11—H11B | 108.1 |
| C6—C5—C4 | 121.45 (15) | O6—C12—H12A | 109.5 |
| C6—C5—H5 | 119.3 | O6—C12—H12B | 109.5 |
| C4—C5—H5 | 119.3 | H12A—C12—H12B | 109.5 |
| C1—C6—C5 | 117.41 (14) | O6—C12—H12C | 109.5 |
| C1—C6—C7 | 121.09 (13) | H12A—C12—H12C | 109.5 |
| C5—C6—C7 | 121.49 (13) | H12B—C12—H12C | 109.5 |
| C8—C7—C6 | 110.10 (12) | C9—N1—C10 | 124.87 (13) |
| C8—C7—C11 | 112.99 (13) | C9—N1—H1 | 117.6 |
| C6—C7—C11 | 112.17 (12) | C10—N1—H1 | 117.6 |
| C8—C7—H7 | 107.1 | O3—N2—O2 | 120.17 (13) |
| C6—C7—H7 | 107.1 | O3—N2—C8 | 118.59 (13) |
| C11—C7—H7 | 107.1 | O2—N2—C8 | 121.24 (13) |
| N2—C8—C9 | 120.36 (13) | O4—N3—O5 | 123.00 (17) |
| N2—C8—C7 | 116.74 (13) | O4—N3—C11 | 118.40 (15) |
| C9—C8—C7 | 122.86 (13) | O5—N3—C11 | 118.53 (15) |
| N1—C9—O1 | 112.12 (13) | C9—O1—C1 | 120.35 (12) |
| N1—C9—C8 | 127.37 (14) | C4—O6—C12 | 117.96 (14) |
| O1—C9—C8 | 120.52 (13) | ||
| C6—C1—C2—C3 | −1.5 (2) | N2—C8—C9—N1 | 7.3 (2) |
| O1—C1—C2—C3 | 177.37 (13) | C7—C8—C9—N1 | −170.06 (15) |
| C1—C2—C3—C4 | 0.5 (2) | N2—C8—C9—O1 | −173.30 (13) |
| C2—C3—C4—O6 | −179.99 (14) | C7—C8—C9—O1 | 9.4 (2) |
| C2—C3—C4—C5 | 0.8 (2) | C8—C7—C11—N3 | −55.31 (17) |
| O6—C4—C5—C6 | 179.61 (14) | C6—C7—C11—N3 | 69.86 (16) |
| C3—C4—C5—C6 | −1.1 (2) | O1—C9—N1—C10 | 3.5 (2) |
| C2—C1—C6—C5 | 1.2 (2) | C8—C9—N1—C10 | −177.05 (15) |
| O1—C1—C6—C5 | −177.60 (13) | C9—C8—N2—O3 | 179.81 (14) |
| C2—C1—C6—C7 | −178.67 (14) | C7—C8—N2—O3 | −2.7 (2) |
| O1—C1—C6—C7 | 2.5 (2) | C9—C8—N2—O2 | 0.0 (2) |
| C4—C5—C6—C1 | 0.1 (2) | C7—C8—N2—O2 | 177.50 (14) |
| C4—C5—C6—C7 | 179.97 (14) | C7—C11—N3—O4 | 89.78 (17) |
| C1—C6—C7—C8 | 11.8 (2) | C7—C11—N3—O5 | −87.28 (17) |
| C5—C6—C7—C8 | −168.03 (14) | N1—C9—O1—C1 | −173.34 (12) |
| C1—C6—C7—C11 | −114.91 (16) | C8—C9—O1—C1 | 7.2 (2) |
| C5—C6—C7—C11 | 65.23 (18) | C2—C1—O1—C9 | 167.88 (13) |
| C6—C7—C8—N2 | 164.64 (13) | C6—C1—O1—C9 | −13.3 (2) |
| C11—C7—C8—N2 | −69.08 (17) | C5—C4—O6—C12 | −178.38 (14) |
| C6—C7—C8—C9 | −17.9 (2) | C3—C4—O6—C12 | 2.3 (2) |
| C11—C7—C8—C9 | 108.34 (16) |
| H··· | ||||
| N1—H1···O2 | 0.86 | 2.01 | 2.6169 (17) | 127 |
| N1—H1···O3i | 0.86 | 2.26 | 2.9808 (18) | 142 |
| C11—H11A···O2ii | 0.97 | 2.49 | 3.4366 (19) | 165 |
| C10—H10A···Cgiii | 0.96 | 2.61 | 3.548 (2) | 164 |
| C10—H10C···Cgiv | 0.96 | 2.86 | 3.706 (2) | 148 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C1–C6 benzene ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O2 | 0.86 | 2.01 | 2.6169 (17) | 127 |
| N1—H1⋯O3i | 0.86 | 2.26 | 2.9808 (18) | 142 |
| C11—H11 | 0.97 | 2.49 | 3.4366 (19) | 165 |
| C10—H10 | 0.96 | 2.61 | 3.548 (2) | 164 |
| C10—H10 | 0.96 | 2.86 | 3.706 (2) | 148 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .