Literature DB >> 21754559

6-Meth-oxy-N-methyl-3-nitro-4-nitro-methyl-4H-chromen-2-amine.

J Muthukumaran, A Parthiban, P Manivel, H Surya Prakash Rao, R Krishna.   

Abstract

In the title compound, C(12)H(13)N(3)O(6), the dihydro-pyran ring adopts a near screw-boat conformation. The dihedral angle between the mean planes of the benzene and dihydro-pyran rings is 6.35 (5)°. An intra-molecular N-H⋯O hydrogen bond generates an S(6) motif, which stabilizes the mol-ecular conformation. In the crystal, weak inter-molecular C-H⋯O, N-H⋯O and C-H⋯π hydrogen bonds contribute to the stabilization of the packing.

Entities:  

Year:  2011        PMID: 21754559      PMCID: PMC3089089          DOI: 10.1107/S1600536811015595

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Gayathri et al. (2006 ▶); Bhaskaran et al. (2006 ▶). For the biological importance of 4H-chromene derivatives, see: Cai (2007 ▶, 2008 ▶); Cai et al. (2006 ▶); Gabor et al. (1988 ▶); Brooks (1998 ▶); Valenti et al. (1993 ▶); Hyana & Saimoto (1987 ▶); Tang et al. (2007 ▶); Wang et al. (2000 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶). For C—H⋯π inter­actions, see: Desiraju & Steiner (1999 ▶).

Experimental

Crystal data

C12H13N3O6 M = 295.25 Monoclinic, a = 6.8354 (2) Å b = 9.4363 (2) Å c = 19.9332 (4) Å β = 90.777 (2)° V = 1285.59 (5) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 293 K 0.4 × 0.4 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.966, T max = 1.000 13856 measured reflections 2256 independent reflections 1804 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.01 2256 reflections 192 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811015595/hq2002sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811015595/hq2002Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811015595/hq2002Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13N3O6F(000) = 616
Mr = 295.25Dx = 1.525 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7594 reflections
a = 6.8354 (2) Åθ = 3.0–29.3°
b = 9.4363 (2) ŵ = 0.12 mm1
c = 19.9332 (4) ÅT = 293 K
β = 90.777 (2)°Block, colorless
V = 1285.59 (5) Å30.4 × 0.4 × 0.2 mm
Z = 4
Oxford Diffraction Xcalibur Eos diffractometer2256 independent reflections
Radiation source: fine-focus sealed tube1804 reflections with I > 2σ(I)
graphiteRint = 0.040
Detector resolution: 15.9821 pixels mm-1θmax = 25.0°, θmin = 3.0°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −11→11
Tmin = 0.966, Tmax = 1.000l = −23→23
13856 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.087P)2] where P = (Fo2 + 2Fc2)/3
2256 reflections(Δ/σ)max = 0.015
192 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2620 (2)0.61723 (15)−0.00254 (7)0.0299 (4)
C20.2708 (2)0.58244 (17)−0.06949 (8)0.0337 (4)
H20.25940.4884−0.08300.040*
C30.2967 (2)0.68797 (18)−0.11657 (8)0.0356 (4)
H30.30190.6656−0.16200.043*
C40.3149 (2)0.82767 (17)−0.09555 (8)0.0335 (4)
C50.3093 (2)0.85951 (17)−0.02791 (7)0.0329 (4)
H50.32390.9532−0.01420.039*
C60.2826 (2)0.75487 (16)0.01994 (7)0.0297 (4)
C70.2766 (2)0.78954 (16)0.09386 (7)0.0323 (4)
H70.39390.84530.10450.039*
C80.2891 (2)0.65553 (16)0.13472 (7)0.0310 (4)
C90.2506 (2)0.52117 (16)0.10765 (7)0.0289 (4)
C100.2007 (2)0.26444 (16)0.10926 (9)0.0379 (4)
H10A0.07980.26550.08420.057*
H10B0.19500.19280.14340.057*
H10C0.30670.24420.07960.057*
C110.0974 (3)0.88254 (16)0.11164 (8)0.0379 (4)
H11A0.11190.91710.15730.046*
H11B0.09160.96380.08190.046*
C120.3430 (3)0.9162 (2)−0.20753 (8)0.0543 (5)
H12A0.44980.8543−0.21800.081*
H12B0.35851.0045−0.23080.081*
H12C0.22190.8728−0.22130.081*
N10.2318 (2)0.40166 (13)0.14032 (6)0.0336 (3)
H10.23830.40480.18340.040*
N20.3329 (2)0.67051 (14)0.20171 (6)0.0356 (3)
N3−0.0864 (2)0.80035 (15)0.10518 (7)0.0411 (4)
O10.22704 (16)0.50418 (11)0.04132 (5)0.0358 (3)
O20.3398 (2)0.56472 (13)0.24035 (5)0.0496 (4)
O30.3669 (2)0.79190 (12)0.22406 (6)0.0484 (4)
O4−0.1438 (2)0.73633 (16)0.15375 (8)0.0703 (5)
O5−0.1686 (2)0.79552 (16)0.05057 (7)0.0641 (4)
O60.34105 (19)0.94142 (13)−0.13716 (6)0.0486 (4)
U11U22U33U12U13U23
C10.0314 (8)0.0310 (8)0.0272 (8)−0.0014 (6)0.0001 (6)0.0012 (7)
C20.0359 (9)0.0344 (9)0.0307 (9)−0.0006 (7)0.0012 (7)−0.0079 (7)
C30.0352 (9)0.0487 (10)0.0230 (8)−0.0021 (7)0.0032 (7)−0.0045 (7)
C40.0309 (8)0.0418 (9)0.0280 (8)−0.0032 (7)0.0031 (6)0.0049 (7)
C50.0366 (9)0.0321 (8)0.0299 (8)−0.0033 (7)0.0004 (7)0.0001 (7)
C60.0321 (8)0.0318 (8)0.0253 (8)−0.0015 (6)0.0000 (6)−0.0011 (6)
C70.0439 (9)0.0280 (8)0.0250 (8)−0.0055 (7)−0.0029 (7)−0.0021 (6)
C80.0381 (9)0.0309 (8)0.0238 (8)−0.0002 (7)−0.0020 (6)−0.0013 (6)
C90.0297 (8)0.0318 (8)0.0253 (8)0.0030 (6)−0.0003 (6)−0.0002 (6)
C100.0427 (10)0.0285 (9)0.0424 (10)−0.0002 (7)−0.0050 (8)−0.0008 (7)
C110.0610 (11)0.0249 (8)0.0278 (9)0.0013 (7)−0.0020 (7)−0.0042 (7)
C120.0661 (13)0.0703 (14)0.0267 (9)−0.0128 (10)0.0045 (8)0.0082 (9)
N10.0443 (8)0.0296 (7)0.0270 (7)0.0007 (6)−0.0005 (6)−0.0001 (6)
N20.0455 (8)0.0358 (8)0.0254 (7)−0.0029 (6)−0.0042 (6)−0.0010 (6)
N30.0534 (9)0.0347 (8)0.0353 (9)0.0109 (6)0.0022 (7)−0.0042 (7)
O10.0538 (7)0.0289 (6)0.0244 (6)−0.0057 (5)−0.0031 (5)−0.0018 (4)
O20.0772 (9)0.0417 (7)0.0297 (7)−0.0045 (6)−0.0105 (6)0.0074 (5)
O30.0775 (9)0.0378 (7)0.0297 (7)−0.0097 (6)−0.0054 (6)−0.0087 (5)
O40.0762 (10)0.0754 (10)0.0597 (9)−0.0071 (8)0.0115 (8)0.0222 (8)
O50.0679 (10)0.0781 (10)0.0460 (8)0.0039 (7)−0.0138 (7)−0.0154 (7)
O60.0696 (9)0.0479 (7)0.0285 (6)−0.0079 (6)0.0065 (6)0.0080 (5)
C1—C21.376 (2)C9—O11.3394 (17)
C1—C61.381 (2)C10—N11.4496 (19)
C1—O11.4019 (17)C10—H10A0.9600
C2—C31.381 (2)C10—H10B0.9600
C2—H20.9300C10—H10C0.9600
C3—C41.388 (2)C11—N31.480 (2)
C3—H30.9300C11—H11A0.9700
C4—O61.3696 (19)C11—H11B0.9700
C4—C51.382 (2)C12—O61.423 (2)
C5—C61.387 (2)C12—H12A0.9600
C5—H50.9300C12—H12B0.9600
C6—C71.511 (2)C12—H12C0.9600
C7—C81.506 (2)N1—H10.8600
C7—C111.551 (2)N2—O31.2497 (17)
C7—H70.9800N2—O21.2613 (16)
C8—N21.3719 (19)N3—O41.2111 (18)
C8—C91.401 (2)N3—O51.2191 (19)
C9—N11.3095 (19)
C2—C1—C6122.24 (14)N1—C10—H10A109.5
C2—C1—O1115.67 (13)N1—C10—H10B109.5
C6—C1—O1122.07 (13)H10A—C10—H10B109.5
C1—C2—C3119.63 (14)N1—C10—H10C109.5
C1—C2—H2120.2H10A—C10—H10C109.5
C3—C2—H2120.2H10B—C10—H10C109.5
C2—C3—C4119.43 (14)N3—C11—C7110.81 (12)
C2—C3—H3120.3N3—C11—H11A109.5
C4—C3—H3120.3C7—C11—H11A109.5
O6—C4—C5115.20 (14)N3—C11—H11B109.5
O6—C4—C3124.98 (14)C7—C11—H11B109.5
C5—C4—C3119.81 (14)H11A—C11—H11B108.1
C6—C5—C4121.45 (15)O6—C12—H12A109.5
C6—C5—H5119.3O6—C12—H12B109.5
C4—C5—H5119.3H12A—C12—H12B109.5
C1—C6—C5117.41 (14)O6—C12—H12C109.5
C1—C6—C7121.09 (13)H12A—C12—H12C109.5
C5—C6—C7121.49 (13)H12B—C12—H12C109.5
C8—C7—C6110.10 (12)C9—N1—C10124.87 (13)
C8—C7—C11112.99 (13)C9—N1—H1117.6
C6—C7—C11112.17 (12)C10—N1—H1117.6
C8—C7—H7107.1O3—N2—O2120.17 (13)
C6—C7—H7107.1O3—N2—C8118.59 (13)
C11—C7—H7107.1O2—N2—C8121.24 (13)
N2—C8—C9120.36 (13)O4—N3—O5123.00 (17)
N2—C8—C7116.74 (13)O4—N3—C11118.40 (15)
C9—C8—C7122.86 (13)O5—N3—C11118.53 (15)
N1—C9—O1112.12 (13)C9—O1—C1120.35 (12)
N1—C9—C8127.37 (14)C4—O6—C12117.96 (14)
O1—C9—C8120.52 (13)
C6—C1—C2—C3−1.5 (2)N2—C8—C9—N17.3 (2)
O1—C1—C2—C3177.37 (13)C7—C8—C9—N1−170.06 (15)
C1—C2—C3—C40.5 (2)N2—C8—C9—O1−173.30 (13)
C2—C3—C4—O6−179.99 (14)C7—C8—C9—O19.4 (2)
C2—C3—C4—C50.8 (2)C8—C7—C11—N3−55.31 (17)
O6—C4—C5—C6179.61 (14)C6—C7—C11—N369.86 (16)
C3—C4—C5—C6−1.1 (2)O1—C9—N1—C103.5 (2)
C2—C1—C6—C51.2 (2)C8—C9—N1—C10−177.05 (15)
O1—C1—C6—C5−177.60 (13)C9—C8—N2—O3179.81 (14)
C2—C1—C6—C7−178.67 (14)C7—C8—N2—O3−2.7 (2)
O1—C1—C6—C72.5 (2)C9—C8—N2—O20.0 (2)
C4—C5—C6—C10.1 (2)C7—C8—N2—O2177.50 (14)
C4—C5—C6—C7179.97 (14)C7—C11—N3—O489.78 (17)
C1—C6—C7—C811.8 (2)C7—C11—N3—O5−87.28 (17)
C5—C6—C7—C8−168.03 (14)N1—C9—O1—C1−173.34 (12)
C1—C6—C7—C11−114.91 (16)C8—C9—O1—C17.2 (2)
C5—C6—C7—C1165.23 (18)C2—C1—O1—C9167.88 (13)
C6—C7—C8—N2164.64 (13)C6—C1—O1—C9−13.3 (2)
C11—C7—C8—N2−69.08 (17)C5—C4—O6—C12−178.38 (14)
C6—C7—C8—C9−17.9 (2)C3—C4—O6—C122.3 (2)
C11—C7—C8—C9108.34 (16)
Cg is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.862.012.6169 (17)127
N1—H1···O3i0.862.262.9808 (18)142
C11—H11A···O2ii0.972.493.4366 (19)165
C10—H10A···Cgiii0.962.613.548 (2)164
C10—H10C···Cgiv0.962.863.706 (2)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O20.862.012.6169 (17)127
N1—H1⋯O3i0.862.262.9808 (18)142
C11—H11A⋯O2ii0.972.493.4366 (19)165
C10—H10ACgiii0.962.613.548 (2)164
C10—H10CCgiv0.962.863.706 (2)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  4-[4-(Diethyl-amino)-phen-yl]-N-methyl-3-nitro-4H-chromen-2-amine.

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