Literature DB >> 22259452

10α-Hy-droxy-4,9-dimethyl-13-(morph-o-lin-4-ylmeth-yl)-3,8,15-trioxatetra-cyclo-[10.3.0.0.0]penta-decan-14-one.

Mohamed Moumou, Ahmed Benharref, Abdelghani Oudahmane, Fouad Mellouki, Moha Berraho.   

Abstract

The title compound, C(19)H(29)NO(6), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methyl-ene-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule contains a fused five- and ten-membered ring system. The ten-membered ring adopts an approximate chair-chair conformation, while the five-membered ring is in an envelope conformation, with the C atom closest to the hy-droxy group forming the flap. In the crystal, weak C-H⋯O hydrogen bonds connect the mol-ecules into layers parallel to (001). An intra-molecular O-H⋯N hydrogen bond is also present.

Entities:  

Year:  2011        PMID: 22259452      PMCID: PMC3254508          DOI: 10.1107/S1600536811053207

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the reactivity of this sesquiterpene, see: Hwang et al. (2006 ▶); Neukirch et al. (2003 ▶); Neelakantan et al. (2009 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For the synthesis see: Moumou et al. (2010 ▶).

Experimental

Crystal data

C19H29NO6 M = 367.43 Monoclinic, a = 11.6772 (9) Å b = 6.9524 (4) Å c = 11.8244 (9) Å β = 102.160 (2)° V = 938.42 (12) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.65 × 0.45 × 0.26 mm

Data collection

Bruker X8 APEXII CCD diffractometer 7793 measured reflections 2069 independent reflections 1661 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.110 S = 1.07 2069 reflections 239 parameters 1 restraint H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick,2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick,2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia,1997 ▶)and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811053207/lh5393sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811053207/lh5393Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811053207/lh5393Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H29NO6F(000) = 396
Mr = 367.43Dx = 1.300 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2070 reflections
a = 11.6772 (9) Åθ = 3.6–26.4°
b = 6.9524 (4) ŵ = 0.10 mm1
c = 11.8244 (9) ÅT = 296 K
β = 102.160 (2)°Prism, colourless
V = 938.42 (12) Å30.65 × 0.45 × 0.26 mm
Z = 2
Bruker X8 APEXII CCD diffractometer1661 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
graphiteθmax = 26.4°, θmin = 3.6°
φ and ω scansh = −14→14
7793 measured reflectionsk = −6→8
2069 independent reflectionsl = −14→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0604P)2 + 0.079P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2069 reflectionsΔρmax = 0.20 e Å3
239 parametersΔρmin = −0.23 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick,2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.047 (7)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2787 (2)0.2053 (4)0.3279 (2)0.0354 (6)
H10.22000.13960.26920.042*
C20.2207 (2)0.3348 (5)0.3984 (2)0.0410 (7)
H20.27240.43470.43970.049*
C30.0963 (2)0.3897 (5)0.3702 (3)0.0481 (8)
C40.0687 (3)0.5894 (6)0.4046 (3)0.0631 (10)
H4A0.12650.62770.47240.076*
H4B−0.00730.58880.42560.076*
C50.0673 (3)0.7374 (5)0.3081 (4)0.0659 (10)
H5A−0.00140.71610.24720.079*
H5B0.06150.86550.33890.079*
C60.1748 (3)0.7262 (4)0.2578 (3)0.0525 (8)
H60.24860.71770.31530.063*
C70.1814 (3)0.6562 (4)0.1444 (3)0.0503 (8)
C80.2969 (3)0.5873 (5)0.1194 (3)0.0468 (7)
H80.29230.60640.03650.056*
C90.3194 (3)0.3721 (5)0.1433 (2)0.0419 (7)
H9A0.37580.32870.09930.050*
H9B0.24690.30330.11450.050*
C100.3649 (2)0.3155 (4)0.2708 (2)0.0323 (6)
H100.38660.43390.31510.039*
C110.4738 (2)0.1839 (4)0.2903 (2)0.0378 (6)
H110.47470.11130.21950.045*
C120.4563 (2)0.0491 (4)0.3832 (2)0.0439 (7)
C130.5891 (2)0.2916 (5)0.3277 (2)0.0455 (7)
H13A0.59190.34890.40300.055*
H13B0.65330.20060.33550.055*
C140.0086 (3)0.2978 (6)0.2748 (3)0.0673 (11)
H14A0.04120.18240.25010.101*
H14B−0.01090.38540.21090.101*
H14C−0.06090.26660.30240.101*
C150.0772 (3)0.5911 (7)0.0548 (3)0.0753 (11)
H15A0.00680.64190.07310.113*
H15B0.07370.45310.05400.113*
H15C0.08450.6368−0.02000.113*
C160.6476 (3)0.3626 (5)0.1469 (3)0.0481 (7)
H16A0.58930.27470.10480.058*
H16B0.71930.29080.17450.058*
C170.6915 (3)0.5830 (6)0.3049 (3)0.0568 (9)
H17A0.76440.51780.33740.068*
H17B0.66280.64220.36780.068*
C180.6700 (3)0.5208 (5)0.0673 (3)0.0610 (9)
H18A0.69830.46520.00310.073*
H18B0.59700.58700.03610.073*
C190.7136 (3)0.7371 (6)0.2215 (3)0.0697 (10)
H19A0.64190.80850.19340.084*
H19B0.77210.82630.26170.084*
N0.60588 (19)0.4434 (4)0.24620 (18)0.0419 (6)
O10.39115 (18)0.7008 (3)0.1779 (2)0.0641 (7)
H1A0.44950.63320.19730.096*
O20.1778 (3)0.8609 (4)0.1609 (3)0.0845 (9)
O30.14029 (17)0.2566 (4)0.46360 (19)0.0613 (7)
O40.34823 (15)0.0656 (3)0.40522 (16)0.0440 (5)
O50.5259 (2)−0.0639 (4)0.4365 (2)0.0649 (7)
O60.7532 (2)0.6551 (4)0.1254 (2)0.0678 (7)
U11U22U33U12U13U23
C10.0331 (13)0.0335 (14)0.0376 (14)0.0022 (11)0.0032 (10)0.0047 (12)
C20.0336 (13)0.0482 (17)0.0435 (16)−0.0015 (12)0.0135 (12)0.0037 (14)
C30.0325 (14)0.0540 (19)0.0604 (19)0.0025 (14)0.0156 (13)0.0134 (17)
C40.0520 (19)0.073 (2)0.072 (2)0.0145 (18)0.0297 (17)−0.003 (2)
C50.070 (2)0.0451 (19)0.089 (3)0.0156 (18)0.0315 (19)−0.004 (2)
C60.0608 (18)0.0330 (17)0.064 (2)−0.0023 (14)0.0126 (15)−0.0011 (15)
C70.0543 (17)0.0281 (15)0.066 (2)0.0054 (13)0.0064 (15)0.0079 (14)
C80.0523 (17)0.0445 (17)0.0430 (16)0.0003 (14)0.0084 (13)0.0106 (14)
C90.0461 (15)0.0467 (16)0.0324 (14)0.0087 (13)0.0071 (12)0.0003 (13)
C100.0349 (13)0.0317 (14)0.0306 (13)0.0050 (11)0.0074 (10)0.0016 (11)
C110.0388 (14)0.0434 (16)0.0328 (14)0.0095 (12)0.0115 (11)0.0020 (12)
C120.0424 (15)0.0452 (17)0.0443 (16)0.0096 (14)0.0098 (13)0.0037 (14)
C130.0366 (14)0.065 (2)0.0364 (15)0.0050 (14)0.0110 (11)0.0041 (15)
C140.0379 (16)0.060 (2)0.096 (3)0.0009 (16)−0.0017 (17)0.015 (2)
C150.058 (2)0.084 (3)0.071 (2)0.012 (2)−0.0148 (17)0.008 (2)
C160.0527 (16)0.0531 (18)0.0422 (16)0.0025 (15)0.0182 (13)−0.0040 (15)
C170.0459 (16)0.073 (2)0.0537 (18)−0.0100 (17)0.0146 (14)−0.0156 (19)
C180.071 (2)0.063 (2)0.0545 (19)−0.0047 (18)0.0258 (17)0.0017 (18)
C190.066 (2)0.062 (2)0.083 (3)−0.0115 (19)0.0228 (19)−0.017 (2)
N0.0367 (12)0.0561 (15)0.0351 (12)0.0013 (11)0.0122 (10)−0.0053 (12)
O10.0548 (13)0.0511 (14)0.0851 (17)−0.0106 (11)0.0121 (12)0.0156 (13)
O20.114 (2)0.0458 (15)0.095 (2)0.0084 (15)0.0268 (18)0.0058 (15)
O30.0436 (11)0.0799 (17)0.0678 (14)0.0123 (11)0.0285 (10)0.0279 (14)
O40.0425 (11)0.0441 (11)0.0470 (11)0.0054 (9)0.0135 (9)0.0138 (9)
O50.0584 (13)0.0708 (17)0.0663 (14)0.0282 (13)0.0148 (11)0.0282 (13)
O60.0679 (14)0.0695 (16)0.0750 (15)−0.0158 (13)0.0351 (12)−0.0037 (14)
C1—O41.458 (3)C11—C121.490 (4)
C1—C21.484 (4)C11—C131.523 (4)
C1—C101.530 (3)C11—H110.9800
C1—H10.9800C12—O51.208 (3)
C2—O31.441 (3)C12—O41.346 (3)
C2—C31.471 (4)C13—N1.470 (4)
C2—H20.9800C13—H13A0.9700
C3—O31.449 (4)C13—H13B0.9700
C3—C141.498 (5)C14—H14A0.9600
C3—C41.500 (5)C14—H14B0.9600
C4—C51.535 (5)C14—H14C0.9600
C4—H4A0.9700C15—H15A0.9600
C4—H4B0.9700C15—H15B0.9600
C5—C61.500 (5)C15—H15C0.9600
C5—H5A0.9700C16—N1.474 (4)
C5—H5B0.9700C16—C181.506 (5)
C6—C71.443 (5)C16—H16A0.9700
C6—O21.486 (4)C16—H16B0.9700
C6—H60.9800C17—N1.460 (4)
C7—O21.438 (4)C17—C191.514 (5)
C7—C151.505 (5)C17—H17A0.9700
C7—C81.518 (4)C17—H17B0.9700
C8—O11.411 (4)C18—O61.417 (4)
C8—C91.535 (4)C18—H18A0.9700
C8—H80.9800C18—H18B0.9700
C9—C101.540 (4)C19—O61.432 (4)
C9—H9A0.9700C19—H19A0.9700
C9—H9B0.9700C19—H19B0.9700
C10—C111.544 (3)O1—H1A0.8200
C10—H100.9800
O4—C1—C2108.2 (2)C12—C11—C13110.2 (2)
O4—C1—C10106.18 (18)C12—C11—C10104.2 (2)
C2—C1—C10111.4 (2)C13—C11—C10113.7 (2)
O4—C1—H1110.3C12—C11—H11109.5
C2—C1—H1110.3C13—C11—H11109.5
C10—C1—H1110.3C10—C11—H11109.5
O3—C2—C359.70 (17)O5—C12—O4120.6 (3)
O3—C2—C1119.8 (3)O5—C12—C11127.7 (3)
C3—C2—C1125.2 (3)O4—C12—C11111.6 (2)
O3—C2—H2113.8N—C13—C11113.2 (2)
C3—C2—H2113.8N—C13—H13A108.9
C1—C2—H2113.8C11—C13—H13A108.9
O3—C3—C259.13 (17)N—C13—H13B108.9
O3—C3—C14112.2 (3)C11—C13—H13B108.9
C2—C3—C14123.1 (3)H13A—C13—H13B107.7
O3—C3—C4116.5 (3)C3—C14—H14A109.5
C2—C3—C4115.9 (3)C3—C14—H14B109.5
C14—C3—C4116.5 (3)H14A—C14—H14B109.5
C3—C4—C5112.8 (3)C3—C14—H14C109.5
C3—C4—H4A109.0H14A—C14—H14C109.5
C5—C4—H4A109.0H14B—C14—H14C109.5
C3—C4—H4B109.0C7—C15—H15A109.5
C5—C4—H4B109.0C7—C15—H15B109.5
H4A—C4—H4B107.8H15A—C15—H15B109.5
C6—C5—C4112.5 (3)C7—C15—H15C109.5
C6—C5—H5A109.1H15A—C15—H15C109.5
C4—C5—H5A109.1H15B—C15—H15C109.5
C6—C5—H5B109.1N—C16—C18110.4 (3)
C4—C5—H5B109.1N—C16—H16A109.6
H5A—C5—H5B107.8C18—C16—H16A109.6
C7—C6—O258.8 (2)N—C16—H16B109.6
C7—C6—C5126.8 (3)C18—C16—H16B109.6
O2—C6—C5115.5 (3)H16A—C16—H16B108.1
C7—C6—H6114.4N—C17—C19110.8 (3)
O2—C6—H6114.4N—C17—H17A109.5
C5—C6—H6114.4C19—C17—H17A109.5
O2—C7—C662.1 (2)N—C17—H17B109.5
O2—C7—C15110.5 (3)C19—C17—H17B109.5
C6—C7—C15124.2 (3)H17A—C17—H17B108.1
O2—C7—C8113.0 (3)O6—C18—C16111.7 (3)
C6—C7—C8120.7 (3)O6—C18—H18A109.3
C15—C7—C8112.8 (3)C16—C18—H18A109.3
O1—C8—C7111.2 (3)O6—C18—H18B109.3
O1—C8—C9111.7 (2)C16—C18—H18B109.3
C7—C8—C9113.3 (3)H18A—C18—H18B107.9
O1—C8—H8106.7O6—C19—C17111.3 (3)
C7—C8—H8106.7O6—C19—H19A109.4
C9—C8—H8106.7C17—C19—H19A109.4
C8—C9—C10116.1 (2)O6—C19—H19B109.4
C8—C9—H9A108.3C17—C19—H19B109.4
C10—C9—H9A108.3H19A—C19—H19B108.0
C8—C9—H9B108.3C17—N—C13109.8 (2)
C10—C9—H9B108.3C17—N—C16108.9 (2)
H9A—C9—H9B107.4C13—N—C16111.1 (2)
C1—C10—C9115.9 (2)C8—O1—H1A109.5
C1—C10—C11103.6 (2)C7—O2—C659.1 (2)
C9—C10—C11113.6 (2)C2—O3—C361.17 (18)
C1—C10—H10107.8C12—O4—C1110.9 (2)
C9—C10—H10107.8C18—O6—C19110.1 (2)
C11—C10—H10107.8
D—H···AD—HH···AD···AD—H···A
O1—H1A···N0.822.233.048 (3)178
C1—H1···O2i0.982.323.169 (4)145
C2—H2···O5ii0.982.503.260 (3)134
C4—H4B···O3iii0.972.523.367 (4)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N0.822.233.048 (3)178
C1—H1⋯O2i0.982.323.169 (4)145
C2—H2⋯O5ii0.982.503.260 (3)134
C4—H4B⋯O3iii0.972.523.367 (4)146

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

3.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

4.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

5.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

6.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

7.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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