Literature DB >> 22249206

Epigenetic regulation of genomic integrity.

Angela K Deem1, Xuan Li, Jessica K Tyler.   

Abstract

Inefficient and inaccurate repair of DNA damage is the principal cause of DNA mutations, chromosomal aberrations, and carcinogenesis. Numerous multiple-step DNA repair pathways exist whose deployment depends on the nature of the DNA lesion. Common to all eukaryotic DNA repair pathways is the need to unravel the compacted chromatin structure to facilitate access of the repair machinery to the DNA and restoration of the original chromatin state afterward. Accordingly, our cells utilize a plethora of coordinated mechanisms to locally open up the chromatin structure to reveal the underlying DNA sequence and to orchestrate the efficient and accurate repair of DNA lesions. Here we review changes to the chromatin structure that are intrinsic to the DNA damage response and the available mechanistic insight into how these chromatin changes facilitate distinct stages of the DNA damage repair pathways to maintain genomic stability.

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Year:  2012        PMID: 22249206      PMCID: PMC3982914          DOI: 10.1007/s00412-011-0358-1

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  205 in total

1.  A YY1-INO80 complex regulates genomic stability through homologous recombination-based repair.

Authors:  Su Wu; Yujiang Shi; Peter Mulligan; Frédérique Gay; Joseph Landry; Huifei Liu; Ju Lu; Hank H Qi; Weijia Wang; Jac A Nickoloff; Carl Wu; Yang Shi
Journal:  Nat Struct Mol Biol       Date:  2007-11-18       Impact factor: 15.369

2.  RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.

Authors:  Michael S Y Huen; Robert Grant; Isaac Manke; Kay Minn; Xiaochun Yu; Michael B Yaffe; Junjie Chen
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

3.  FACT-mediated exchange of histone variant H2AX regulated by phosphorylation of H2AX and ADP-ribosylation of Spt16.

Authors:  Kyu Heo; Hyunjung Kim; Si Ho Choi; Jongkyu Choi; Kyunghwan Kim; Jiafeng Gu; Michael R Lieber; Allen S Yang; Woojin An
Journal:  Mol Cell       Date:  2008-04-11       Impact factor: 17.970

4.  Distinct roles of chromatin-associated proteins MDC1 and 53BP1 in mammalian double-strand break repair.

Authors:  Anyong Xie; Andrea Hartlerode; Manuel Stucki; Shobu Odate; Nadine Puget; Amy Kwok; Ganesh Nagaraju; Catherine Yan; Frederick W Alt; Junjie Chen; Stephen P Jackson; Ralph Scully
Journal:  Mol Cell       Date:  2007-12-28       Impact factor: 17.970

5.  Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.

Authors:  Nadine K Kolas; J Ross Chapman; Shinichiro Nakada; Jarkko Ylanko; Richard Chahwan; Frédéric D Sweeney; Stephanie Panier; Megan Mendez; Jan Wildenhain; Timothy M Thomson; Laurence Pelletier; Stephen P Jackson; Daniel Durocher
Journal:  Science       Date:  2007-11-15       Impact factor: 47.728

6.  RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination.

Authors:  Adam G W Matthews; Alex J Kuo; Santiago Ramón-Maiques; Sunmi Han; Karen S Champagne; Dmitri Ivanov; Mercedes Gallardo; Dylan Carney; Peggie Cheung; David N Ciccone; Kay L Walter; Paul J Utz; Yang Shi; Tatiana G Kutateladze; Wei Yang; Or Gozani; Marjorie A Oettinger
Journal:  Nature       Date:  2007-11-21       Impact factor: 49.962

Review 7.  Activation and regulation of ATM kinase activity in response to DNA double-strand breaks.

Authors:  J-H Lee; T T Paull
Journal:  Oncogene       Date:  2007-12-10       Impact factor: 9.867

8.  Phosphorylation of SDT repeats in the MDC1 N terminus triggers retention of NBS1 at the DNA damage-modified chromatin.

Authors:  Fredrik Melander; Simon Bekker-Jensen; Jacob Falck; Jiri Bartek; Niels Mailand; Jiri Lukas
Journal:  J Cell Biol       Date:  2008-04-14       Impact factor: 10.539

9.  Histone methyltransferase Dot1 and Rad9 inhibit single-stranded DNA accumulation at DSBs and uncapped telomeres.

Authors:  Federico Lazzaro; Vasileia Sapountzi; Magda Granata; Achille Pellicioli; Moreshwar Vaze; James E Haber; Paolo Plevani; David Lydall; Marco Muzi-Falconi
Journal:  EMBO J       Date:  2008-04-17       Impact factor: 11.598

10.  Constitutive phosphorylation of MDC1 physically links the MRE11-RAD50-NBS1 complex to damaged chromatin.

Authors:  Christoph Spycher; Edward S Miller; Kelly Townsend; Lucijana Pavic; Nicholas A Morrice; Pavel Janscak; Grant S Stewart; Manuel Stucki
Journal:  J Cell Biol       Date:  2008-04-14       Impact factor: 10.539

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  27 in total

1.  Generation and purification of highly specific antibodies for detecting post-translationally modified proteins in vivo.

Authors:  Swathi Arur; Tim Schedl
Journal:  Nat Protoc       Date:  2014-01-23       Impact factor: 13.491

2.  BCR-ABL1-positive microvesicles transform normal hematopoietic transplants through genomic instability: implications for donor cell leukemia.

Authors:  X Zhu; Y You; Q Li; C Zeng; F Fu; A Guo; H Zhang; P Zou; Z Zhong; H Wang; Y Wu; Q Li; F Kong; Z Chen
Journal:  Leukemia       Date:  2014-01-31       Impact factor: 11.528

3.  The emerging role of lysine demethylases in DNA damage response: dissecting the recruitment mode of KDM4D/JMJD2D to DNA damage sites.

Authors:  Hanan Khoury-Haddad; Prathamesh T Nadar-Ponniah; Samah Awwad; Nabieh Ayoub
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 4.  The Methylation Game: Epigenetic and Epitranscriptomic Dynamics of 5-Methylcytosine.

Authors:  Adele Alagia; Monika Gullerova
Journal:  Front Cell Dev Biol       Date:  2022-06-03

5.  Chromatin regulators and their impact on DNA repair and G2 checkpoint recovery.

Authors:  Veronique A J Smits; Ignacio Alonso-de Vega; Daniël O Warmerdam
Journal:  Cell Cycle       Date:  2020-07-30       Impact factor: 4.534

Review 6.  Histone modifications and DNA double-strand break repair after exposure to ionizing radiations.

Authors:  Clayton R Hunt; Deepti Ramnarain; Nobuo Horikoshi; Puneeth Iyengar; Raj K Pandita; Jerry W Shay; Tej K Pandita
Journal:  Radiat Res       Date:  2013-02-01       Impact factor: 2.841

7.  ARID1A alterations are associated with FGFR3-wild type, poor-prognosis, urothelial bladder tumors.

Authors:  Cristina Balbás-Martínez; María Rodríguez-Pinilla; Ariel Casanova; Orlando Domínguez; David G Pisano; Gonzalo Gómez; Josep Lloreta; José A Lorente; Núria Malats; Francisco X Real
Journal:  PLoS One       Date:  2013-05-01       Impact factor: 3.240

8.  Long-range heterochromatin association is mediated by silencing and double-strand DNA break repair proteins.

Authors:  Jacob G Kirkland; Rohinton T Kamakaka
Journal:  J Cell Biol       Date:  2013-06-03       Impact factor: 10.539

Review 9.  Histone H4 lysine 20 methylation: key player in epigenetic regulation of genomic integrity.

Authors:  Stine Jørgensen; Gunnar Schotta; Claus Storgaard Sørensen
Journal:  Nucleic Acids Res       Date:  2013-01-23       Impact factor: 16.971

10.  Chromatin modifications and the DNA damage response to ionizing radiation.

Authors:  Rakesh Kumar; Nobuo Horikoshi; Mayank Singh; Arun Gupta; Hari S Misra; Kevin Albuquerque; Clayton R Hunt; Tej K Pandita
Journal:  Front Oncol       Date:  2013-01-22       Impact factor: 6.244

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