Literature DB >> 25714495

The emerging role of lysine demethylases in DNA damage response: dissecting the recruitment mode of KDM4D/JMJD2D to DNA damage sites.

Hanan Khoury-Haddad1, Prathamesh T Nadar-Ponniah, Samah Awwad, Nabieh Ayoub.   

Abstract

KDM4D is a lysine demethylase that removes tri- and di- methylated residues from H3K9 and is involved in transcriptional regulation and carcinogenesis. We recently showed that KDM4D is recruited to DNA damage sites in a PARP1-dependent manner and facilitates double-strand break repair in human cells. Moreover, we demonstrated that KDM4D is an RNA binding protein and mapped its RNA-binding motifs. Interestingly, KDM4D-RNA interaction is essential for its localization on chromatin and subsequently for efficient demethylation of its histone substrate H3K9me3. Here, we provide new data that shed mechanistic insights into KDM4D accumulation at DNA damage sites. We show for the first time that KDM4D binds poly(ADP-ribose) (PAR) in vitro via its C-terminal region. In addition, we demonstrate that KDM4D-RNA interaction is required for KDM4D accumulation at DNA breakage sites. Finally, we discuss the recruitment mode and the biological functions of additional lysine demethylases including KDM4B, KDM5B, JMJD1C, and LSD1 in DNA damage response.

Entities:  

Keywords:  DNA damage response (DDR); KDM4D; PARP1; and cancer; chromosomal instability; double strand break (DSB); lysine demethylases (KDM); poly(ADP-ribose)ylation (PARylation)

Mesh:

Substances:

Year:  2015        PMID: 25714495      PMCID: PMC4614868          DOI: 10.1080/15384101.2015.1014147

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  101 in total

1.  PLU-1 is an H3K4 demethylase involved in transcriptional repression and breast cancer cell proliferation.

Authors:  Kenichi Yamane; Keisuke Tateishi; Robert J Klose; Jia Fang; Laura A Fabrizio; Hediye Erdjument-Bromage; Joyce Taylor-Papadimitriou; Paul Tempst; Yi Zhang
Journal:  Mol Cell       Date:  2007-03-15       Impact factor: 17.970

2.  Chromatin dynamics during DSB repair.

Authors:  Martin Falk; Emilie Lukasova; Barbora Gabrielova; Vladan Ondrej; Stanislav Kozubek
Journal:  Biochim Biophys Acta       Date:  2007-07-18

Review 3.  The discovery of histone demethylases.

Authors:  Yujiang Geno Shi; Yuichi Tsukada
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

4.  Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.

Authors:  Irene Chiolo; Aki Minoda; Serafin U Colmenares; Aris Polyzos; Sylvain V Costes; Gary H Karpen
Journal:  Cell       Date:  2011-02-25       Impact factor: 41.582

5.  Demethylation of trimethylated histone H3 Lys4 in vivo by JARID1 JmjC proteins.

Authors:  David J Seward; Gabrielle Cubberley; Soojin Kim; Matt Schonewald; Lian Zhang; Brian Tripet; David L Bentley
Journal:  Nat Struct Mol Biol       Date:  2007-02-18       Impact factor: 15.369

6.  PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites.

Authors:  Jean-François Haince; Darin McDonald; Amélie Rodrigue; Ugo Déry; Jean-Yves Masson; Michael J Hendzel; Guy G Poirier
Journal:  J Biol Chem       Date:  2007-11-19       Impact factor: 5.157

7.  Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins.

Authors:  Ivan Ahel; Dragana Ahel; Takahiro Matsusaka; Allison J Clark; Jonathon Pines; Simon J Boulton; Stephen C West
Journal:  Nature       Date:  2008-01-03       Impact factor: 49.962

8.  Modulation of p53 function by SET8-mediated methylation at lysine 382.

Authors:  Xiaobing Shi; Ioulia Kachirskaia; Hiroshi Yamaguchi; Lisandra E West; Hong Wen; Evelyn W Wang; Sucharita Dutta; Ettore Appella; Or Gozani
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

9.  Activation of androgen receptor by histone demethylases JMJD2A and JMJD2D.

Authors:  Sook Shin; Ralf Janknecht
Journal:  Biochem Biophys Res Commun       Date:  2007-06-04       Impact factor: 3.575

10.  The histone demethylase LSD1/KDM1A promotes the DNA damage response.

Authors:  Nima Mosammaparast; Haeyoung Kim; Benoit Laurent; Yu Zhao; Hui Jun Lim; Mona C Majid; Sebastian Dango; Yuying Luo; Kristina Hempel; Mathew E Sowa; Steven P Gygi; Hanno Steen; J Wade Harper; Bruce Yankner; Yang Shi
Journal:  J Cell Biol       Date:  2013-11-11       Impact factor: 10.539

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  22 in total

1.  KDM4D crosstalks with PARP1 and RNA at DNA DSBs.

Authors:  Michal Goldberg
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

2.  NELF-E is recruited to DNA double-strand break sites to promote transcriptional repression and repair.

Authors:  Samah W Awwad; Enas R Abu-Zhayia; Noga Guttmann-Raviv; Nabieh Ayoub
Journal:  EMBO Rep       Date:  2017-03-23       Impact factor: 8.807

Review 3.  Histone Demethylase JMJD2D: A Novel Player in Colorectal and Hepatocellular Cancers.

Authors:  Qiang Chen; Kesong Peng; Pingli Mo; Chundong Yu
Journal:  Cancers (Basel)       Date:  2022-06-08       Impact factor: 6.575

4.  Modulation of Excitatory Synaptic Transmission During Cannabinoid Receptor Activation.

Authors:  Valentina L Savchenko
Journal:  Cell Mol Neurobiol       Date:  2021-03-16       Impact factor: 5.046

5.  The JmjN domain as a dimerization interface and a targeted inhibitor of KDM4 demethylase activity.

Authors:  May Levin; Michal Stark; Yehuda G Assaraf
Journal:  Oncotarget       Date:  2018-03-30

6.  VLX600 Disrupts Homologous Recombination and Synergizes with PARP Inhibitors and Cisplatin by Inhibiting Histone Lysine Demethylases.

Authors:  Arun Kanakkanthara; Larry M Karnitz; Thomas L Ekstrom; Nicholas M Pathoulas; Amelia M Huehls
Journal:  Mol Cancer Ther       Date:  2021-06-17       Impact factor: 6.261

7.  Depletion of Histone Demethylase Jarid1A Resulting in Histone Hyperacetylation and Radiation Sensitivity Does Not Affect DNA Double-Strand Break Repair.

Authors:  Corina Penterling; Guido A Drexler; Claudia Böhland; Ramona Stamp; Christina Wilke; Herbert Braselmann; Randolph B Caldwell; Judith Reindl; Stefanie Girst; Christoph Greubel; Christian Siebenwirth; Wael Y Mansour; Kerstin Borgmann; Günther Dollinger; Kristian Unger; Anna A Friedl
Journal:  PLoS One       Date:  2016-06-02       Impact factor: 3.240

8.  Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction.

Authors:  Matthew J O'Meara; Sara Ballouz; Brian K Shoichet; Jesse Gillis
Journal:  PLoS One       Date:  2016-07-28       Impact factor: 3.240

9.  H3K9me3 demethylase Kdm4d facilitates the formation of pre-initiative complex and regulates DNA replication.

Authors:  Rentian Wu; Zhiquan Wang; Honglian Zhang; Haiyun Gan; Zhiguo Zhang
Journal:  Nucleic Acids Res       Date:  2016-09-26       Impact factor: 16.971

10.  A role of human RNase P subunits, Rpp29 and Rpp21, in homology directed-repair of double-strand breaks.

Authors:  Enas R Abu-Zhayia; Hanan Khoury-Haddad; Noga Guttmann-Raviv; Raphael Serruya; Nayef Jarrous; Nabieh Ayoub
Journal:  Sci Rep       Date:  2017-04-21       Impact factor: 4.379

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