Literature DB >> 22248543

Transposon-mediated adaptive and directed mutations and their potential evolutionary benefits.

Zhongge Zhang1, Milton H Saier.   

Abstract

Transposons, mobile genetic elements that can hop from one chromosomal location to another, are known to be both beneficial and deleterious to the cell that bears them. Their value in accelerating evolutionary adaptation is well recognized. We herein summarize published research dealing with these elements and then move on to review our own research efforts which focus on a small transposon that can induce mutations under the control of host factors in a process that phenotypically and mechanistically conforms to the definition of 'directed mutation'. Directed mutations occur at higher frequencies when they are beneficial, being induced by the stress condition that they relieve. Here, we review evidence for transposon-mediated directed mutation in Escherichia coli. Deletion mutants in the crp gene can not grow on glycerol (Glp(-)); however, these cells mutate specifically to efficient glycerol utilization (Glp(+)) at rates that are greatly enhanced by the presence of glycerol or the loss of the glycerol repressor (GlpR). These rates are greatly depressed by glucose or by glpR overexpression. Of the four tandem GlpR-binding sites (O1-O4) in the control region of the glpFK operon, O4 (downstream) specifically controls glpFK expression while O1 (upstream) controls mutation rate. Mutation is due to insertion of the small transposon IS5 into a specific site just upstream of the glpFK promoter. Mutational control by the glycerol regulon repressor GlpR is independent of the selection and assay procedures, and IS5 insertion into other gene activation sites is unaffected by the presence of glycerol or the loss of GlpR. The results establish the principle of transposon-mediated directed mutation, identify a protein responsible for its regulation, and define essential aspects of the mechanism.
Copyright © 2012 S. Karger AG, Basel.

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Year:  2012        PMID: 22248543      PMCID: PMC3697268          DOI: 10.1159/000333108

Source DB:  PubMed          Journal:  J Mol Microbiol Biotechnol        ISSN: 1464-1801


  67 in total

1.  Constitutive activation of the fucAO operon and silencing of the divergently transcribed fucPIK operon by an IS5 element in Escherichia coli mutants selected for growth on L-1,2-propanediol.

Authors:  Y M Chen; Z Lu; E C Lin
Journal:  J Bacteriol       Date:  1989-11       Impact factor: 3.490

Review 2.  Environmental regulation of mutation rates at specific sites.

Authors:  Ruth C Massey; Angus Buckling
Journal:  Trends Microbiol       Date:  2002-12       Impact factor: 17.079

3.  The effect of host-encoded nucleoid proteins on transposition: H-NS influences targeting of both IS903 and Tn10.

Authors:  Bryan Swingle; Michelle O'Carroll; David Haniford; Keith M Derbyshire
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

4.  Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress.

Authors:  Erin Twiss; Abbie M Coros; Norma P Tavakoli; Keith M Derbyshire
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

5.  Cis-regulatory elements in the Accord retrotransposon result in tissue-specific expression of the Drosophila melanogaster insecticide resistance gene Cyp6g1.

Authors:  Henry Chung; Michael R Bogwitz; Caroline McCart; Alex Andrianopoulos; Richard H Ffrench-Constant; Philip Batterham; Phillip J Daborn
Journal:  Genetics       Date:  2006-12-18       Impact factor: 4.562

6.  A novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12.

Authors:  Takeyoshi Miki; Yoshihiro Yamamoto; Hideo Matsuda
Journal:  Methods Mol Biol       Date:  2008

Review 7.  The bacterial chromosome.

Authors:  Milton H Saier
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Mar-Apr       Impact factor: 8.250

8.  Insertion of DNA activates the cryptic bgl operon in E. coli K12.

Authors:  A E Reynolds; J Felton; A Wright
Journal:  Nature       Date:  1981-10-22       Impact factor: 49.962

9.  Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification.

Authors:  Heather Hendrickson; E Susan Slechta; Ulfar Bergthorsson; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

10.  Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli.

Authors:  Zhongge Zhang; Ming Ren Yen; Milton H Saier
Journal:  J Bacteriol       Date:  2010-01-22       Impact factor: 3.490

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  16 in total

Review 1.  Control of Transposon-Mediated Directed Mutation by the Escherichia coli Phosphoenolpyruvate:Sugar Phosphotransferase System.

Authors:  Milton H Saier; Zhongge Zhang
Journal:  J Mol Microbiol Biotechnol       Date:  2015-07-09

Review 2.  Involvement of Two-Component Signaling on Bacterial Motility and Biofilm Development.

Authors:  Birgit M Prüß
Journal:  J Bacteriol       Date:  2017-08-22       Impact factor: 3.490

Review 3.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06

4.  Transposon-mediated activation of the Escherichia coli glpFK operon is inhibited by specific DNA-binding proteins: Implications for stress-induced transposition events.

Authors:  Zhongge Zhang; Milton H Saier
Journal:  Mutat Res       Date:  2016-10-27       Impact factor: 2.433

5.  Environment-directed activation of the Escherichia coliflhDC operon by transposons.

Authors:  Zhongge Zhang; Chika Kukita; M Zafri Humayun; Milton H Saier
Journal:  Microbiology       Date:  2017-04-12       Impact factor: 2.777

6.  Gene expression changes in Porphyromonas gingivalis W83 after inoculation in rat oral cavity.

Authors:  Jian Zhao; Qian Li; Chun-Ling Pan; Jun-Chao Liu; Hong-Yan Wang; Li-Si Tan; Ya-Ping Pan
Journal:  BMC Microbiol       Date:  2015-05-24       Impact factor: 3.605

7.  Transposon-mediated directed mutation controlled by DNA binding proteins in Escherichia coli.

Authors:  Milton H Saier; Zhongge Zhang
Journal:  Front Microbiol       Date:  2014-08-01       Impact factor: 5.640

8.  Impact of Insertion Sequences and Recombination on the Population Structure of Staphylococcus haemolyticus.

Authors:  Ons Bouchami; Herminia de Lencastre; Maria Miragaia
Journal:  PLoS One       Date:  2016-06-01       Impact factor: 3.240

9.  Zinc-Induced Transposition of Insertion Sequence Elements Contributes to Increased Adaptability of Cupriavidus metallidurans.

Authors:  Joachim Vandecraen; Pieter Monsieurs; Max Mergeay; Natalie Leys; Abram Aertsen; Rob Van Houdt
Journal:  Front Microbiol       Date:  2016-03-23       Impact factor: 5.640

10.  PiggyBac transposon-based polyadenylation-signal trap for genome-wide mutagenesis in mice.

Authors:  Limei Li; Peng Liu; Liangliang Sun; Jian Fei
Journal:  Sci Rep       Date:  2016-06-13       Impact factor: 4.379

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