Literature DB >> 11830643

Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification.

Heather Hendrickson1, E Susan Slechta, Ulfar Bergthorsson, Dan I Andersson, John R Roth.   

Abstract

When a particular lac mutant of Escherichia coli starves in the presence of lactose, nongrowing cells appear to direct mutations preferentially to sites that allow growth (adaptive mutation). This observation suggested that growth limitation stimulates mutability. Evidence is provided here that this behavior is actually caused by a standard Darwinian process in which natural selection acts in three sequential steps. First, growth limitation favors growth of a subpopulation with an amplification of the mutant lac gene; next, it favors cells with a lac(+) revertant allele within the amplified array. Finally, it favors loss of mutant copies until a stable haploid lac(+) revertant arises and overgrows the colony. By increasing the lac copy number, selection enhances the likelihood of reversion within each developing clone. This sequence of events appears to direct mutations to useful sites. General mutagenesis is a side-effect of growth with an amplification (SOS induction). The F' plasmid, which carries lac, contributes by stimulating gene duplication and amplification. Selective stress has no direct effect on mutation rate or target specificity, but acts to favor a succession of cell types with progressively improved growth on lactose. The sequence of events--amplification, mutation, segregation--may help to explain both the origins of some cancers and the evolution of new genes under selection.

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Year:  2002        PMID: 11830643      PMCID: PMC122336          DOI: 10.1073/pnas.032680899

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Evidence that stationary-phase hypermutation in the Escherichia coli chromosome is promoted by recombination.

Authors:  H J Bull; G J McKenzie; P J Hastings; S M Rosenberg
Journal:  Genetics       Date:  2000-04       Impact factor: 4.562

2.  Adaptive amplification: an inducible chromosomal instability mechanism.

Authors:  P J Hastings; H J Bull; J R Klump; S M Rosenberg
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

3.  Stationary-phase mutation in the bacterial chromosome: recombination protein and DNA polymerase IV dependence.

Authors:  H J Bull; M J Lombardo; S M Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

4.  The role of transient hypermutators in adaptive mutation in Escherichia coli.

Authors:  W A Rosche; P L Foster
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

5.  Overproduction of transposon Tn10-encoded tetracycline resistance protein results in cell death and loss of membrane potential.

Authors:  B Eckert; C F Beck
Journal:  J Bacteriol       Date:  1989-06       Impact factor: 3.490

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Authors:  J Cairns; J Overbaugh; S Miller
Journal:  Nature       Date:  1988-09-08       Impact factor: 49.962

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Journal:  Z Allg Mikrobiol       Date:  1979

8.  Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation.

Authors:  P L Foster; J M Trimarchi
Journal:  Proc Natl Acad Sci U S A       Date:  1995-06-06       Impact factor: 11.205

9.  Positive selection for loss of tetracycline resistance.

Authors:  B R Bochner; H C Huang; G L Schieven; B N Ames
Journal:  J Bacteriol       Date:  1980-08       Impact factor: 3.490

10.  Transposon stability and a role for conjugational transfer in adaptive mutability.

Authors:  V G Godoy; M S Fox
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

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  71 in total

1.  Evidence that selected amplification of a bacterial lac frameshift allele stimulates Lac(+) reversion (adaptive mutation) with or without general hypermutability.

Authors:  E Susan Slechta; Jing Liu; Dan I Andersson; John R Roth
Journal:  Genetics       Date:  2002-07       Impact factor: 4.562

2.  Error-prone polymerase, DNA polymerase IV, is responsible for transient hypermutation during adaptive mutation in Escherichia coli.

Authors:  Joshua D Tompkins; Jennifer L Nelson; Jill C Hazel; Stacy L Leugers; Jeffrey D Stumpf; Patricia L Foster
Journal:  J Bacteriol       Date:  2003-06       Impact factor: 3.490

3.  Mathematical issues arising from the directed mutation controversy.

Authors:  Qi Zheng
Journal:  Genetics       Date:  2003-05       Impact factor: 4.562

4.  Adaptive mutation: general mutagenesis is not a programmed response to stress but results from rare coamplification of dinB with lac.

Authors:  E Susan Slechta; Kim L Bunny; Elisabeth Kugelberg; Eric Kofoid; Dan I Andersson; John R Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-14       Impact factor: 11.205

5.  Role of Escherichia coli DNA polymerase IV in in vivo replication fidelity.

Authors:  Wojciech Kuban; Piotr Jonczyk; Damian Gawel; Karolina Malanowska; Roel M Schaaper; Iwona J Fijalkowska
Journal:  J Bacteriol       Date:  2004-07       Impact factor: 3.490

6.  Adaptive point mutation and adaptive amplification pathways in the Escherichia coli Lac system: stress responses producing genetic change.

Authors:  Susan M Rosenberg; P J Hastings
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

7.  Adaptive mutation in Escherichia coli.

Authors:  Patricia L Foster
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

8.  Adaptive mutation: how growth under selection stimulates Lac(+) reversion by increasing target copy number.

Authors:  John R Roth; Dan I Andersson
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

9.  Roles of YqjH and YqjW, homologs of the Escherichia coli UmuC/DinB or Y superfamily of DNA polymerases, in stationary-phase mutagenesis and UV-induced mutagenesis of Bacillus subtilis.

Authors:  Huang-Mo Sung; Gabriel Yeamans; Christian A Ross; Ronald E Yasbin
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

10.  Experimental adaptation of Salmonella typhimurium to mice.

Authors:  Annika I Nilsson; Elisabeth Kugelberg; Otto G Berg; Dan I Andersson
Journal:  Genetics       Date:  2004-11       Impact factor: 4.562

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