Literature DB >> 22242720

A synthetic recursive "+1" pathway for carbon chain elongation.

Ryan J Marcheschi1, Han Li, Kechun Zhang, Elizabeth L Noey, Seonah Kim, Asha Chaubey, K N Houk, James C Liao.   

Abstract

Nature uses four methods of carbon chain elongation for the production of 2-ketoacids, fatty acids, polyketides, and isoprenoids. Using a combination of quantum mechanical (QM) modeling, protein-substrate modeling, and protein and metabolic engineering, we have engineered the enzymes involved in leucine biosynthesis for use as a synthetic "+1" recursive metabolic pathway to extend the carbon chain of 2-ketoacids. This modified pathway preferentially selects longer-chain substrates for catalysis, as compared to the non-recursive natural pathway, and can recursively catalyze five elongation cycles to synthesize bulk chemicals, such as 1-heptanol, 1-octanol, and phenylpropanol directly from glucose. The "+1" chemistry is a valuable metabolic tool in addition to the "+5" chemistry and "+2" chemistry for the biosynthesis of isoprenoids, fatty acids, or polyketides.

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Year:  2012        PMID: 22242720      PMCID: PMC3571861          DOI: 10.1021/cb200313e

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  31 in total

1.  Native protein sequences are close to optimal for their structures.

Authors:  B Kuhlman; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

2.  Crystal structure of LeuA from Mycobacterium tuberculosis, a key enzyme in leucine biosynthesis.

Authors:  Nayden Koon; Christopher J Squire; Edward N Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

3.  Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals.

Authors:  Clementina Dellomonaco; James M Clomburg; Elliot N Miller; Ramon Gonzalez
Journal:  Nature       Date:  2011-08-10       Impact factor: 49.962

4.  Absolute configuration of alpha isopropylmalate and the mechanism of its conversion to beta isopropylmalate in the biosynthesis of leucine.

Authors:  F E Cole; M G Kalyanpur; C M Stevens
Journal:  Biochemistry       Date:  1973-08-14       Impact factor: 3.162

5.  Characterization of the Saccharomyces cerevisiae YMR318C (ADH6) gene product as a broad specificity NADPH-dependent alcohol dehydrogenase: relevance in aldehyde reduction.

Authors:  Carol Larroy; M Rosario Fernández; Eva González; Xavier Parés; Josep A Biosca
Journal:  Biochem J       Date:  2002-01-01       Impact factor: 3.857

6.  Properties and functional significance of Saccharomyces cerevisiae ADHVI.

Authors:  Carol Larroy; M Rosario Fernández; Eva González; Xavier Parés; Josep A Biosca
Journal:  Chem Biol Interact       Date:  2003-02-01       Impact factor: 5.192

7.  Rational pathway engineering of type I fatty acid synthase allows the biosynthesis of triacetic acid lactone from D-glucose in vivo.

Authors:  Wenjuan Zha; Zengyi Shao; John W Frost; Huimin Zhao
Journal:  J Am Chem Soc       Date:  2004-04-14       Impact factor: 15.419

8.  Distribution of the isopropylmalate pathway to leucine among diverse bacteria.

Authors:  B I Stieglitz; J M Calvo
Journal:  J Bacteriol       Date:  1974-06       Impact factor: 3.490

9.  Biochemical and molecular characterization of alpha-ketoisovalerate decarboxylase, an enzyme involved in the formation of aldehydes from amino acids by Lactococcus lactis.

Authors:  Marta de la Plaza; Pilar Fernández de Palencia; Carmen Peláez; Teresa Requena
Journal:  FEMS Microbiol Lett       Date:  2004-09-15       Impact factor: 2.742

10.  Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homoacetate production.

Authors:  T B Causey; S Zhou; K T Shanmugam; L O Ingram
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-29       Impact factor: 11.205

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  25 in total

Review 1.  Engineering synthetic recursive pathways to generate non-natural small molecules.

Authors:  Elizabeth A Felnagle; Asha Chaubey; Elizabeth L Noey; Kendall N Houk; James C Liao
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 2.  Expanding lysine industry: industrial biomanufacturing of lysine and its derivatives.

Authors:  Jie Cheng; Peng Chen; Andong Song; Dan Wang; Qinhong Wang
Journal:  J Ind Microbiol Biotechnol       Date:  2018-04-13       Impact factor: 3.346

3.  Engineering a Coenzyme A Detour To Expand the Product Scope and Enhance the Selectivity of the Ehrlich Pathway.

Authors:  William B Black; Edward King; Yixi Wang; Ana Jenic; Andrew T Rowley; Kosuke Seki; Ray Luo; Han Li
Journal:  ACS Synth Biol       Date:  2018-11-20       Impact factor: 5.110

Review 4.  Next generation biofuel engineering in prokaryotes.

Authors:  Luisa S Gronenberg; Ryan J Marcheschi; James C Liao
Journal:  Curr Opin Chem Biol       Date:  2013-04-23       Impact factor: 8.822

5.  Reaction kinetic analysis of the 3-hydroxypropionate/4-hydroxybutyrate CO2 fixation cycle in extremely thermoacidophilic archaea.

Authors:  Andrew J Loder; Yejun Han; Aaron B Hawkins; Hong Lian; Gina L Lipscomb; Gerrit J Schut; Matthew W Keller; Michael W W Adams; Robert M Kelly
Journal:  Metab Eng       Date:  2016-10-19       Impact factor: 9.783

6.  Engineering Escherichia coli for Microbial Production of Butanone.

Authors:  Kajan Srirangan; Xuejia Liu; Lamees Akawi; Mark Bruder; Murray Moo-Young; C Perry Chou
Journal:  Appl Environ Microbiol       Date:  2016-04-18       Impact factor: 4.792

Review 7.  2-Keto acids based biosynthesis pathways for renewable fuels and chemicals.

Authors:  Yohei Tashiro; Gabriel M Rodriguez; Shota Atsumi
Journal:  J Ind Microbiol Biotechnol       Date:  2014-11-26       Impact factor: 3.346

Review 8.  Protein engineering for metabolic engineering: current and next-generation tools.

Authors:  Ryan J Marcheschi; Luisa S Gronenberg; James C Liao
Journal:  Biotechnol J       Date:  2013-04-16       Impact factor: 4.677

9.  Identification of homophenylalanine biosynthetic genes from the cyanobacterium Nostoc punctiforme PCC73102 and application to its microbial production by Escherichia coli.

Authors:  Kento Koketsu; Satoshi Mitsuhashi; Kazuhiko Tabata
Journal:  Appl Environ Microbiol       Date:  2013-01-25       Impact factor: 4.792

Review 10.  Biosynthesis of hydrocarbons and volatile organic compounds by fungi: bioengineering potential.

Authors:  Daniel J Spakowicz; Scott A Strobel
Journal:  Appl Microbiol Biotechnol       Date:  2015-05-10       Impact factor: 4.813

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