Literature DB >> 22238305

Endogenous lentiviruses in the ferret genome.

Jie Cui1, Edward C Holmes.   

Abstract

By screening 74 chordate genomes for endogenous lentiviruses using Pol sequences of exogenous lentiviruses as a reference, we identified a novel endogenous lentivirus in the genome of the ferret (Mustela putorius furo). Phylogenetic analysis suggested that the ferret endogenous lentivirus, denoted ELVmpf, diverged early in the evolution of the mammalian lentiviruses, although with a lack of resolution at key nodes. These data support the notion that lentiviruses have evolved on timescales of millions of years.

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Year:  2012        PMID: 22238305      PMCID: PMC3302300          DOI: 10.1128/JVI.06652-11

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  11 in total

1.  Constructing primate phylogenies from ancient retrovirus sequences.

Authors:  W E Johnson; J M Coffin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

3.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

4.  Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders.

Authors:  M Bulmer; K H Wolfe; P M Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-15       Impact factor: 11.205

5.  TimeTree: a public knowledge-base of divergence times among organisms.

Authors:  S Blair Hedges; Joel Dudley; Sudhir Kumar
Journal:  Bioinformatics       Date:  2006-10-04       Impact factor: 6.937

6.  A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution.

Authors:  Robert J Gifford; Aris Katzourakis; Michael Tristem; Oliver G Pybus; Mark Winters; Robert W Shafer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

7.  Sharing of endogenous lentiviral gene fragments among leporid lineages separated for more than 12 million years.

Authors:  W van der Loo; J Abrantes; P J Esteves
Journal:  J Virol       Date:  2008-12-24       Impact factor: 5.103

8.  Discovery and analysis of the first endogenous lentivirus.

Authors:  Aris Katzourakis; Michael Tristem; Oliver G Pybus; Robert J Gifford
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-23       Impact factor: 11.205

9.  Parallel germline infiltration of a lentivirus in two Malagasy lemurs.

Authors:  Clément Gilbert; David G Maxfield; Steven M Goodman; Cédric Feschotte
Journal:  PLoS Genet       Date:  2009-03-20       Impact factor: 5.917

10.  Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses.

Authors:  Z Keckesova; L M J Ylinen; G J Towers; R J Gifford; A Katzourakis
Journal:  Virology       Date:  2008-12-13       Impact factor: 3.616

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  17 in total

Review 1.  Endogenous viruses: insights into viral evolution and impact on host biology.

Authors:  Cédric Feschotte; Clément Gilbert
Journal:  Nat Rev Genet       Date:  2012-03-16       Impact factor: 53.242

2.  Birth, decay, and reconstruction of an ancient TRIMCyp gene fusion in primate genomes.

Authors:  Ray Malfavon-Borja; Lily I Wu; Michael Emerman; Harmit Singh Malik
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

3.  A primitive endogenous lentivirus in a colugo: insights into the early evolution of lentiviruses.

Authors:  Guan-Zhu Han; Michael Worobey
Journal:  Mol Biol Evol       Date:  2014-10-27       Impact factor: 16.240

4.  Endogenous hepadnaviruses in the genome of the budgerigar (Melopsittacus undulatus) and the evolution of avian hepadnaviruses.

Authors:  Jie Cui; Edward C Holmes
Journal:  J Virol       Date:  2012-05-02       Impact factor: 5.103

5.  The first full-length endogenous hepadnaviruses: identification and analysis.

Authors:  Wei Liu; Shaokun Pan; Huijuan Yang; Weiya Bai; Zhongliang Shen; Jing Liu; Youhua Xie
Journal:  J Virol       Date:  2012-06-20       Impact factor: 5.103

6.  Endogenous lentiviral elements in the weasel family (Mustelidae).

Authors:  Guan-Zhu Han; Michael Worobey
Journal:  Mol Biol Evol       Date:  2012-04-20       Impact factor: 16.240

7.  A novel endogenous betaretrovirus group characterized from polar bears (Ursus maritimus) and giant pandas (Ailuropoda melanoleuca).

Authors:  Jens Mayer; Kyriakos Tsangaras; Felix Heeger; María Avila-Arcos; Mark D Stenglein; Wei Chen; Wei Sun; Camila J Mazzoni; Nikolaus Osterrieder; Alex D Greenwood
Journal:  Virology       Date:  2013-05-29       Impact factor: 3.616

8.  Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface.

Authors:  Kevin R McCarthy; Andrea Kirmaier; Patrick Autissier; Welkin E Johnson
Journal:  PLoS Pathog       Date:  2015-08-20       Impact factor: 6.823

Review 9.  The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus.

Authors:  Antoinette C van der Kuyl; Ben Berkhout
Journal:  Retrovirology       Date:  2012-11-06       Impact factor: 4.602

10.  Gain-of-sensitivity mutations in a Trim5-resistant primary isolate of pathogenic SIV identify two independent conserved determinants of Trim5α specificity.

Authors:  Kevin R McCarthy; Aaron G Schmidt; Andrea Kirmaier; Allison L Wyand; Ruchi M Newman; Welkin E Johnson
Journal:  PLoS Pathog       Date:  2013-05-09       Impact factor: 6.823

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