Literature DB >> 22718817

The first full-length endogenous hepadnaviruses: identification and analysis.

Wei Liu1, Shaokun Pan, Huijuan Yang, Weiya Bai, Zhongliang Shen, Jing Liu, Youhua Xie.   

Abstract

In silico screening of metazoan genome data identified multiple endogenous hepadnaviral elements in the budgerigar (Melopsittacus undulatus) genome, most notably two elements comprising about 1.3 × and 1.0 × the full-length genome. Phylogenetic and molecular dating analyses show that endogenous budgerigar hepatitis B viruses (eBHBV) share an ancestor with extant avihepadnaviruses and infiltrated the budgerigar genome millions of years ago. Identification of full-length genomes with preserved key features like ε signals could enable resurrection of ancient BHBV.

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Year:  2012        PMID: 22718817      PMCID: PMC3416111          DOI: 10.1128/JVI.01164-12

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  26 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

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Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

Review 3.  Hepatitis B virus biology.

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Journal:  Microbiol Mol Biol Rev       Date:  2000-03       Impact factor: 11.056

Review 4.  The role of hepatitis B virus integrations in the pathogenesis of human hepatocellular carcinoma.

Authors:  Ruben Bonilla Guerrero; Lewis R Roberts
Journal:  J Hepatol       Date:  2005-05       Impact factor: 25.083

Review 5.  Hepatitis B virus taxonomy and hepatitis B virus genotypes.

Authors:  Stephan Schaefer
Journal:  World J Gastroenterol       Date:  2007-01-07       Impact factor: 5.742

Review 6.  Integration of hepatitis B virus DNA and its implications for hepatocarcinogenesis.

Authors:  K Matsubara; T Tokino
Journal:  Mol Biol Med       Date:  1990-06

7.  Features of two hepatitis B virus (HBV) DNA integrations suggest mechanisms of HBV integration.

Authors:  O Hino; K Ohtake; C E Rogler
Journal:  J Virol       Date:  1989-06       Impact factor: 5.103

8.  Specific hepatitis B virus integration in hepatocellular carcinoma DNA through a viral 11-base-pair direct repeat.

Authors:  A Dejean; P Sonigo; S Wain-Hobson; P Tiollais
Journal:  Proc Natl Acad Sci U S A       Date:  1984-09       Impact factor: 11.205

9.  Integration of hepatitis B virus DNA: evidence for integration in the single-stranded gap.

Authors:  R Koshy; S Koch; A F von Loringhoven; R Kahmann; K Murray; P H Hofschneider
Journal:  Cell       Date:  1983-08       Impact factor: 41.582

Review 10.  Paleovirology - ghosts and gifts of viruses past.

Authors:  Maulik R Patel; Michael Emerman; Harmit S Malik
Journal:  Curr Opin Virol       Date:  2011-10       Impact factor: 7.090

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  11 in total

1.  The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses.

Authors:  Alexander Suh; Jürgen Brosius; Jürgen Schmitz; Jan Ole Kriegs
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

2.  Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes.

Authors:  C Gilbert; J M Meik; D Dashevsky; D C Card; T A Castoe; S Schaack
Journal:  Proc Biol Sci       Date:  2014-09-22       Impact factor: 5.349

3.  Detection of atypical genes in virus families using a one-class SVM.

Authors:  Saskia Metzler; Olga V Kalinina
Journal:  BMC Genomics       Date:  2014-10-20       Impact factor: 3.969

4.  Early mesozoic coexistence of amniotes and hepadnaviridae.

Authors:  Alexander Suh; Claudia C Weber; Christian Kehlmaier; Edward L Braun; Richard E Green; Uwe Fritz; David A Ray; Hans Ellegren
Journal:  PLoS Genet       Date:  2014-12-11       Impact factor: 5.917

Review 5.  Engineering Hepadnaviruses as Reporter-Expressing Vectors: Recent Progress and Future Perspectives.

Authors:  Weiya Bai; Xiaoxian Cui; Youhua Xie; Jing Liu
Journal:  Viruses       Date:  2016-05-10       Impact factor: 5.048

6.  New Avian Hepadnavirus in Palaeognathous Bird, Germany.

Authors:  Wendy K Jo; Vanessa M Pfankuche; Henning Petersen; Samuel Frei; Maya Kummrow; Stephan Lorenzen; Martin Ludlow; Julia Metzger; Wolfgang Baumgärtner; Albert Osterhaus; Erhard van der Vries
Journal:  Emerg Infect Dis       Date:  2017-12       Impact factor: 6.883

Review 7.  Mode and tempo of human hepatitis virus evolution.

Authors:  Rachele Cagliani; Diego Forni; Manuela Sironi
Journal:  Comput Struct Biotechnol J       Date:  2019-10-25       Impact factor: 7.271

Review 8.  Evolutionary biology of human hepatitis viruses.

Authors:  Andrea Rasche; Anna-Lena Sander; Victor Max Corman; Jan Felix Drexler
Journal:  J Hepatol       Date:  2018-11-23       Impact factor: 25.083

9.  Ancient evolution of hepadnaviral paleoviruses and their impact on host genomes.

Authors:  Spyros Lytras; Gloria Arriagada; Robert J Gifford
Journal:  Virus Evol       Date:  2021-03-03

10.  Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses.

Authors:  Chris Lauber; Stefan Seitz; Simone Mattei; Alexander Suh; Jürgen Beck; Jennifer Herstein; Jacob Börold; Walter Salzburger; Lars Kaderali; John A G Briggs; Ralf Bartenschlager
Journal:  Cell Host Microbe       Date:  2017-08-31       Impact factor: 21.023

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