Literature DB >> 22237545

Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium.

Ulrike Pfreundt1, Lucas J Stal, Björn Voß, Wolfgang R Hess.   

Abstract

Marine cyanobacteria of the genus Acaryochloris are the only known organisms that use chlorophyll d as a photosynthetic pigment. However, based on chemical sediment analyses, chlorophyll d has been recognized to be widespread in oceanic and lacustrine environments. Therefore it is highly relevant to understand the genetic basis for different physiologies and possible niche adaptation in this genus. Here we show that unlike all other known isolates of Acaryochloris, the strain HICR111A, isolated from waters around Heron Island, Great Barrier Reef, possesses a unique genomic region containing all the genes for the structural and enzymatically active proteins of nitrogen fixation and cofactor biosynthesis. Their phylogenetic analysis suggests a close relation to nitrogen fixation genes from certain other marine cyanobacteria. We show that nitrogen fixation in Acaryochloris sp. HICR111A is regulated in a light-dark-dependent fashion. We conclude that nitrogen fixation, one of the most complex physiological traits known in bacteria, might be transferred among oceanic microbes by horizontal gene transfer more often than anticipated so far. Our data show that the two powerful processes of oxygenic photosynthesis and nitrogen fixation co-occur in one and the same cell also in this branch of marine microbes and characterize Acaryochloris as a physiologically versatile inhabitant of an ecological niche, which is primarily driven by the absorption of far-red light.

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Year:  2012        PMID: 22237545      PMCID: PMC3379635          DOI: 10.1038/ismej.2011.199

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  22 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  MRBAYES: Bayesian inference of phylogenetic trees.

Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

3.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

4.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

Review 5.  Cyanobacterial genomics for ecology and biotechnology.

Authors:  Wolfgang R Hess
Journal:  Curr Opin Microbiol       Date:  2011-08-11       Impact factor: 7.934

6.  Segregation of nitrogen fixation and oxygenic photosynthesis in the marine cyanobacterium Trichodesmium.

Authors:  I Berman-Frank; P Lundgren; Y B Chen; H Küpper; Z Kolber; B Bergman; P Falkowski
Journal:  Science       Date:  2001-11-16       Impact factor: 47.728

Review 7.  Nitrogen fixation by marine cyanobacteria.

Authors:  Jonathan P Zehr
Journal:  Trends Microbiol       Date:  2011-01-10       Impact factor: 17.079

8.  Nitrogenase activity in cyanobacteria measured by the acetylene reduction assay: a comparison between batch incubation and on-line monitoring.

Authors:  M Staal; S T Lintel-Hekkert; F Harren; L Stal
Journal:  Environ Microbiol       Date:  2001-05       Impact factor: 5.491

Review 9.  Nitrogen cycle of the open ocean: from genes to ecosystems.

Authors:  Jonathan P Zehr; Raphael M Kudela
Journal:  Ann Rev Mar Sci       Date:  2011

10.  Dynamics of gene duplication in the genomes of chlorophyll d-producing cyanobacteria: implications for the ecological niche.

Authors:  Scott R Miller; A Michelle Wood; Robert E Blankenship; Maria Kim; Steven Ferriera
Journal:  Genome Biol Evol       Date:  2011-06-21       Impact factor: 3.416

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  12 in total

1.  An atypical psbA gene encodes a sentinel D1 protein to form a physiologically relevant inactive photosystem II complex in cyanobacteria.

Authors:  Kimberly M Wegener; Aparna Nagarajan; Himadri B Pakrasi
Journal:  J Biol Chem       Date:  2014-12-18       Impact factor: 5.157

2.  Biofilm growth and near-infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina.

Authors:  Lars Behrendt; Verena Schrameyer; Klaus Qvortrup; Luisa Lundin; Søren J Sørensen; Anthony W D Larkum; Michael Kühl
Journal:  Appl Environ Microbiol       Date:  2012-03-30       Impact factor: 4.792

Review 3.  Chlorophyll d and Acaryochloris marina: current status.

Authors:  Patrick Loughlin; Yuankui Lin; Min Chen
Journal:  Photosynth Res       Date:  2013-04-25       Impact factor: 3.573

4.  Subsurface associations of Acaryochloris-related picocyanobacteria with oil-utilizing bacteria in the Arabian Gulf water body: promising consortia in oil sediment bioremediation.

Authors:  Dhia Al-Bader; Mohamed Eliyas; Rihab Rayan; Samir Radwan
Journal:  Microb Ecol       Date:  2012-12-21       Impact factor: 4.552

5.  In situ metabolomic- and transcriptomic-profiling of the host-associated cyanobacteria Prochloron and Acaryochloris marina.

Authors:  Lars Behrendt; Jean-Baptiste Raina; Adrian Lutz; Witold Kot; Mads Albertsen; Per Halkjær-Nielsen; Søren J Sørensen; Anthony Wd Larkum; Michael Kühl
Journal:  ISME J       Date:  2017-10-31       Impact factor: 11.217

Review 6.  Synthetic biology of cyanobacteria: unique challenges and opportunities.

Authors:  Bertram M Berla; Rajib Saha; Cheryl M Immethun; Costas D Maranas; Tae Seok Moon; Himadri B Pakrasi
Journal:  Front Microbiol       Date:  2013-08-27       Impact factor: 5.640

7.  The primary transcriptome of the marine diazotroph Trichodesmium erythraeum IMS101.

Authors:  Ulrike Pfreundt; Matthias Kopf; Natalia Belkin; Ilana Berman-Frank; Wolfgang R Hess
Journal:  Sci Rep       Date:  2014-08-26       Impact factor: 4.379

Review 8.  Photosynthesis at the far-red region of the spectrum in Acaryochloris marina.

Authors:  Syed Lal Badshah; Yahia Mabkhot; Salim S Al-Showiman
Journal:  Biol Res       Date:  2017-05-19       Impact factor: 5.612

9.  Sequential splicing of a group II twintron in the marine cyanobacterium Trichodesmium.

Authors:  Ulrike Pfreundt; Wolfgang R Hess
Journal:  Sci Rep       Date:  2015-11-18       Impact factor: 4.379

10.  Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes.

Authors:  Yohei Shimura; Yuu Hirose; Naomi Misawa; Yasunori Osana; Hiroshi Katoh; Haruyo Yamaguchi; Masanobu Kawachi
Journal:  DNA Res       Date:  2015-10-21       Impact factor: 4.458

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