Literature DB >> 21840247

Cyanobacterial genomics for ecology and biotechnology.

Wolfgang R Hess1.   

Abstract

Cyanobacteria are the only prokaryotes that directly convert solar energy and CO(2) into organic matter by oxygenic photosynthesis, explaining their relevance for primary production in many ecosystems and the increasing interest for biotechnology. At present, there are more than 60 cyanobacteria for which a total genome sequence is publicly available. These cyanobacteria belong to different lifestyles and origins, coming from marine and freshwater aquatic environments, as well as terrestrial and symbiotic habitats. Genome sizes vary by a factor of six, from 1.44 Mb to 9.05 Mb, with the number of reported genes ranging from 1241 to 8462. Several studies have demonstrated how these sequences could be used to successfully infer important ecological, physiological and biotechnologically relevant characteristics. However, sequences of cyanobacterial origin also comprise a significant portion of certain metagenomes. Moreover, genome analysis has been employed for culture-independent approaches and for resequencing mutant strains, a very recent tool in cyanobacterial research.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21840247     DOI: 10.1016/j.mib.2011.07.024

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  23 in total

1.  Oxygen-independent alkane formation by non-heme iron-dependent cyanobacterial aldehyde decarbonylase: investigation of kinetics and requirement for an external electron donor.

Authors:  Bekir E Eser; Debasis Das; Jaehong Han; Patrik R Jones; E Neil G Marsh
Journal:  Biochemistry       Date:  2011-11-15       Impact factor: 3.162

Review 2.  Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Authors:  Michelle Davison; Eric Hall; Richard Zare; Devaki Bhaya
Journal:  Photosynth Res       Date:  2014-12-17       Impact factor: 3.573

3.  Toxin-antitoxin systems on the large defense plasmid pSYSA of Synechocystis sp. PCC 6803.

Authors:  Stefan Kopfmann; Wolfgang R Hess
Journal:  J Biol Chem       Date:  2013-01-15       Impact factor: 5.157

Review 4.  Cyanobacterial ultrastructure in light of genomic sequence data.

Authors:  C R Gonzalez-Esquer; J Smarda; R Rippka; S D Axen; G Guglielmi; M Gugger; C A Kerfeld
Journal:  Photosynth Res       Date:  2016-06-25       Impact factor: 3.573

5.  Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium.

Authors:  Ulrike Pfreundt; Lucas J Stal; Björn Voß; Wolfgang R Hess
Journal:  ISME J       Date:  2012-01-12       Impact factor: 10.302

Review 6.  The chemical ecology of cyanobacteria.

Authors:  Pedro N Leão; Niclas Engene; Agostinho Antunes; William H Gerwick; Vitor Vasconcelos
Journal:  Nat Prod Rep       Date:  2012-01-12       Impact factor: 13.423

Review 7.  Biological nitrogen fixation in non-legume plants.

Authors:  Carole Santi; Didier Bogusz; Claudine Franche
Journal:  Ann Bot       Date:  2013-03-10       Impact factor: 4.357

8.  Proteomic analysis reveals resistance mechanism against biofuel hexane in Synechocystis sp. PCC 6803.

Authors:  Jie Liu; Lei Chen; Jiangxin Wang; Jianjun Qiao; Weiwen Zhang
Journal:  Biotechnol Biofuels       Date:  2012-09-07       Impact factor: 6.040

9.  Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803.

Authors:  Henning Knoop; Marianne Gründel; Yvonne Zilliges; Robert Lehmann; Sabrina Hoffmann; Wolfgang Lockau; Ralf Steuer
Journal:  PLoS Comput Biol       Date:  2013-06-27       Impact factor: 4.475

10.  Microevolution in cyanobacteria: re-sequencing a motile substrain of Synechocystis sp. PCC 6803.

Authors:  Danika Trautmann; Björn Voss; Annegret Wilde; Salim Al-Babili; Wolfgang R Hess
Journal:  DNA Res       Date:  2012-10-15       Impact factor: 4.458

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