Literature DB >> 22236526

Considerations for reporting finite element analysis studies in biomechanics.

Ahmet Erdemir1, Trent M Guess, Jason Halloran, Srinivas C Tadepalli, Tina M Morrison.   

Abstract

Simulation-based medicine and the development of complex computer models of biological structures is becoming ubiquitous for advancing biomedical engineering and clinical research. Finite element analysis (FEA) has been widely used in the last few decades to understand and predict biomechanical phenomena. Modeling and simulation approaches in biomechanics are highly interdisciplinary, involving novice and skilled developers in all areas of biomedical engineering and biology. While recent advances in model development and simulation platforms offer a wide range of tools to investigators, the decision making process during modeling and simulation has become more opaque. Hence, reliability of such models used for medical decision making and for driving multiscale analysis comes into question. Establishing guidelines for model development and dissemination is a daunting task, particularly with the complex and convoluted models used in FEA. Nonetheless, if better reporting can be established, researchers will have a better understanding of a model's value and the potential for reusability through sharing will be bolstered. Thus, the goal of this document is to identify resources and considerate reporting parameters for FEA studies in biomechanics. These entail various levels of reporting parameters for model identification, model structure, simulation structure, verification, validation, and availability. While we recognize that it may not be possible to provide and detail all of the reporting considerations presented, it is possible to establish a level of confidence with selective use of these parameters. More detailed reporting, however, can establish an explicit outline of the decision-making process in simulation-based analysis for enhanced reproducibility, reusability, and sharing.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22236526      PMCID: PMC3278509          DOI: 10.1016/j.jbiomech.2011.11.038

Source DB:  PubMed          Journal:  J Biomech        ISSN: 0021-9290            Impact factor:   2.712


  18 in total

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Journal:  J Biomech       Date:  1983       Impact factor: 2.712

Review 6.  Validation of computational models in biomechanics.

Authors:  H B Henninger; S P Reese; A E Anderson; J A Weiss
Journal:  Proc Inst Mech Eng H       Date:  2010       Impact factor: 1.617

7.  The mechanical environment of the chondrocyte: a biphasic finite element model of cell-matrix interactions in articular cartilage.

Authors:  F Guilak; V C Mow
Journal:  J Biomech       Date:  2000-12       Impact factor: 2.712

8.  CONSORT 2010 statement: updated guidelines for reporting parallel group randomised trials.

Authors:  Kenneth F Schulz; Douglas G Altman; David Moher
Journal:  BMJ       Date:  2010-03-23

9.  Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Authors:  Chris F Taylor; Dawn Field; Susanna-Assunta Sansone; Jan Aerts; Rolf Apweiler; Michael Ashburner; Catherine A Ball; Pierre-Alain Binz; Molly Bogue; Tim Booth; Alvis Brazma; Ryan R Brinkman; Adam Michael Clark; Eric W Deutsch; Oliver Fiehn; Jennifer Fostel; Peter Ghazal; Frank Gibson; Tanya Gray; Graeme Grimes; John M Hancock; Nigel W Hardy; Henning Hermjakob; Randall K Julian; Matthew Kane; Carsten Kettner; Christopher Kinsinger; Eugene Kolker; Martin Kuiper; Nicolas Le Novère; Jim Leebens-Mack; Suzanna E Lewis; Phillip Lord; Ann-Marie Mallon; Nishanth Marthandan; Hiroshi Masuya; Ruth McNally; Alexander Mehrle; Norman Morrison; Sandra Orchard; John Quackenbush; James M Reecy; Donald G Robertson; Philippe Rocca-Serra; Henry Rodriguez; Heiko Rosenfelder; Javier Santoyo-Lopez; Richard H Scheuermann; Daniel Schober; Barry Smith; Jason Snape; Christian J Stoeckert; Keith Tipton; Peter Sterk; Andreas Untergasser; Jo Vandesompele; Stefan Wiemann
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10.  FieldML: concepts and implementation.

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  32 in total

Review 1.  Multiscale mechanics of articular cartilage: potentials and challenges of coupling musculoskeletal, joint, and microscale computational models.

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Journal:  Ann Biomed Eng       Date:  2012-05-31       Impact factor: 3.934

2.  Application of neural networks for the prediction of cartilage stress in a musculoskeletal system.

Authors:  Yunkai Lu; Palgun Reddy Pulasani; Reza Derakhshani; Trent M Guess
Journal:  Biomed Signal Process Control       Date:  2013-11-01       Impact factor: 3.880

3.  3D patient-specific model of the tibia from CT for orthopedic use.

Authors:  Raide A González-Carbonell; Armando Ortiz-Prado; Victor H Jacobo-Armendáriz; Yosbel A Cisneros-Hidalgo; Armando Alpízar-Aguirre
Journal:  J Orthop       Date:  2015-01-31

Review 4.  Deciphering the "Art" in Modeling and Simulation of the Knee Joint: Overall Strategy.

Authors:  Ahmet Erdemir; Thor F Besier; Jason P Halloran; Carl W Imhauser; Peter J Laz; Tina M Morrison; Kevin B Shelburne
Journal:  J Biomech Eng       Date:  2019-07-01       Impact factor: 2.097

5.  Finite element analysis of the rotator cuff: A systematic review.

Authors:  Drew H Redepenning; Paula M Ludewig; John M Looft
Journal:  Clin Biomech (Bristol, Avon)       Date:  2019-10-23       Impact factor: 2.063

6.  Commentary on the integration of model sharing and reproducibility analysis to scholarly publishing workflow in computational biomechanics.

Authors:  Ahmet Erdemir; Trent M Guess; Jason P Halloran; Luca Modenese; Jeffrey A Reinbolt; Darryl G Thelen; Brian R Umberger; Ahmet Erdemir; Trent M Guess; Jason P Halloran; Luca Modenese; Jeffrey A Reinbolt; Darryl G Thelen; Brian R Umberger; Brian R Umberger; Ahmet Erdemir; Darryl G Thelen; Trent M Guess; Jeffrey A Reinbolt; Luca Modenese; Jason P Halloran
Journal:  IEEE Trans Biomed Eng       Date:  2016-10       Impact factor: 4.538

7.  In vivo bone strain and finite element modeling of a rhesus macaque mandible during mastication.

Authors:  Olga Panagiotopoulou; José Iriarte-Diaz; Simon Wilshin; Paul C Dechow; Andrea B Taylor; Hyab Mehari Abraha; Sharifah F Aljunid; Callum F Ross
Journal:  Zoology (Jena)       Date:  2017-09-01       Impact factor: 2.240

8.  Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research.

Authors:  Ahmet Erdemir; Peter J Hunter; Gerhard A Holzapfel; Leslie M Loew; John Middleton; Christopher R Jacobs; Perumal Nithiarasu; Rainlad Löhner; Guowei Wei; Beth A Winkelstein; Victor H Barocas; Farshid Guilak; Joy P Ku; Jennifer L Hicks; Scott L Delp; Michael Sacks; Jeffrey A Weiss; Gerard A Ateshian; Steve A Maas; Andrew D McCulloch; Grace C Y Peng
Journal:  J Biomech Eng       Date:  2018-02-01       Impact factor: 2.097

9.  Quantifying the roles of space and stochasticity in computer simulations for cell biology and cellular biochemistry.

Authors:  M E Johnson; A Chen; J R Faeder; P Henning; I I Moraru; M Meier-Schellersheim; R F Murphy; T Prüstel; J A Theriot; A M Uhrmacher
Journal:  Mol Biol Cell       Date:  2020-11-25       Impact factor: 4.138

10.  Finite element analysis for prediction of bone strength.

Authors:  Philippe K Zysset; Enrico Dall'ara; Peter Varga; Dieter H Pahr
Journal:  Bonekey Rep       Date:  2013-08-07
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