Literature DB >> 27166816

Probing the Twisted Structure of Sickle Hemoglobin Fibers via Particle Simulations.

Lu Lu1, Xuejin Li2, Peter G Vekilov3, George Em Karniadakis4.   

Abstract

Polymerization of sickle hemoglobin (HbS) is the primary pathogenic event of sickle cell disease. For insight into the nature of the HbS polymer fiber formation, we develop a particle model-resembling a coarse-grained molecular model-constructed to match the intermolecular contacts between HbS molecules. We demonstrate that the particle model predicts the formation of HbS polymer fibers by attachment of monomers to rough fiber ends and the growth rate increases linearly with HbS concentration. We show that the characteristic 14-molecule fiber cross section is preserved during growth. We also correlate the asymmetry of the contact sites on the HbS molecular surface with the structure of the polymer fiber composed of seven helically twisted double strands. Finally, we show that the same asymmetry mediates the mechanical and structural properties of the HbS polymer fiber.
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27166816      PMCID: PMC4940994          DOI: 10.1016/j.bpj.2016.04.002

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  A model for the sickle hemoglobin fiber using both mutation sites.

Authors:  A Roufberg; F A Ferrone
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

2.  A multiscale red blood cell model with accurate mechanics, rheology, and dynamics.

Authors:  Dmitry A Fedosov; Bruce Caswell; George Em Karniadakis
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Uncoupling of the spectrin-based skeleton from the lipid bilayer in sickled red cells.

Authors:  S C Liu; L H Derick; S Zhai; J Palek
Journal:  Science       Date:  1991-04-26       Impact factor: 47.728

4.  A coarse-grain molecular dynamics model for sickle hemoglobin fibers.

Authors:  He Li; George Lykotrafitis
Journal:  J Mech Behav Biomed Mater       Date:  2010-11-10

5.  Fabrication, assembly, and application of patchy particles.

Authors:  Amar B Pawar; Ilona Kretzschmar
Journal:  Macromol Rapid Commun       Date:  2010-01-05       Impact factor: 5.734

6.  Length distributions of hemoglobin S fibers.

Authors:  R W Briehl; E S Mann; R Josephs
Journal:  J Mol Biol       Date:  1990-02-20       Impact factor: 5.469

7.  Nucleation and growth of fibres and gel formation in sickle cell haemoglobin.

Authors:  R E Samuel; E D Salmon; R W Briehl
Journal:  Nature       Date:  1990-06-28       Impact factor: 49.962

8.  Pairings and polarities of the 14 strands in sickle cell hemoglobin fibers.

Authors:  D W Rodgers; R H Crepeau; S J Edelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

Review 9.  Hemoglobin S gelation and sickle cell disease.

Authors:  W A Eaton; J Hofrichter
Journal:  Blood       Date:  1987-11       Impact factor: 22.113

10.  Multiple stiffening effects of nanoscale knobs on human red blood cells infected with Plasmodium falciparum malaria parasite.

Authors:  Yao Zhang; Changjin Huang; Sangtae Kim; Mahdi Golkaram; Matthew W A Dixon; Leann Tilley; Ju Li; Sulin Zhang; Subra Suresh
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

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  11 in total

1.  Molecular insights into the irreversible mechanical behavior of sickle hemoglobin.

Authors:  Sumith Yesudasan; Simone A Douglas; Manu O Platt; Xianqiao Wang; Rodney D Averett
Journal:  J Biomol Struct Dyn       Date:  2018-05-04

2.  Quantifying Shear-Induced Deformation and Detachment of Individual Adherent Sickle Red Blood Cells.

Authors:  Yixiang Deng; Dimitrios P Papageorgiou; Hung-Yu Chang; Sabia Z Abidi; Xuejin Li; Ming Dao; George Em Karniadakis
Journal:  Biophys J       Date:  2018-12-18       Impact factor: 4.033

3.  Dynamics of deformable straight and curved prolate capsules in simple shear flow.

Authors:  Xiao Zhang; Wilbur A Lam; Michael D Graham
Journal:  Phys Rev Fluids       Date:  2019-04-18       Impact factor: 2.537

Review 4.  Biomechanics and biorheology of red blood cells in sickle cell anemia.

Authors:  Xuejin Li; Ming Dao; George Lykotrafitis; George Em Karniadakis
Journal:  J Biomech       Date:  2016-11-12       Impact factor: 2.712

5.  Mesoscopic Adaptive Resolution Scheme toward Understanding of Interactions between Sickle Cell Fibers.

Authors:  Lu Lu; He Li; Xin Bian; Xuejin Li; George Em Karniadakis
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

Review 6.  Computational Biomechanics of Human Red Blood Cells in Hematological Disorders.

Authors:  Xuejin Li; He Li; Hung-Yu Chang; George Lykotrafitis; George Em Karniadakis
Journal:  J Biomech Eng       Date:  2017-02-01       Impact factor: 2.097

7.  Polymer-Peptide Conjugates Convert Amyloid into Protein Nanobundles through Fragmentation and Lateral Association.

Authors:  John W Smith; Xing Jiang; Hyosung An; Alexander M Barclay; Giuseppe Licari; Emad Tajkhorshid; Edwin G Moore; Chad M Rienstra; Jeffrey S Moore; Qian Chen
Journal:  ACS Appl Nano Mater       Date:  2019-09-10

8.  Patient-specific modeling of individual sickle cell behavior under transient hypoxia.

Authors:  Xuejin Li; E Du; Ming Dao; Subra Suresh; George Em Karniadakis
Journal:  PLoS Comput Biol       Date:  2017-03-13       Impact factor: 4.475

Review 9.  Rational Drug Design of Peptide-Based Therapies for Sickle Cell Disease.

Authors:  Olujide O Olubiyi; Maryam O Olagunju; Birgit Strodel
Journal:  Molecules       Date:  2019-12-12       Impact factor: 4.411

Review 10.  Synergistic Integration of Laboratory and Numerical Approaches in Studies of the Biomechanics of Diseased Red Blood Cells.

Authors:  He Li; Dimitrios P Papageorgiou; Hung-Yu Chang; Lu Lu; Jun Yang; Yixiang Deng
Journal:  Biosensors (Basel)       Date:  2018-08-10
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