Literature DB >> 22223081

Technical desiderata for the integration of genomic data into Electronic Health Records.

Daniel R Masys1, Gail P Jarvik, Neil F Abernethy, Nicholas R Anderson, George J Papanicolaou, Dina N Paltoo, Mark A Hoffman, Isaac S Kohane, Howard P Levy.   

Abstract

The era of "Personalized Medicine," guided by individual molecular variation in DNA, RNA, expressed proteins and other forms of high volume molecular data brings new requirements and challenges to the design and implementation of Electronic Health Records (EHRs). In this article we describe the characteristics of biomolecular data that differentiate it from other classes of data commonly found in EHRs, enumerate a set of technical desiderata for its management in healthcare settings, and offer a candidate technical approach to its compact and efficient representation in operational systems.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID： 22223081      PMCID： PMC3328607          DOI： 10.1016/j.jbi.2011.12.005

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN： 1532-0464            Impact factor:   6.317


  19 in total

1.  Ten commandments for effective clinical decision support: making the practice of evidence-based medicine a reality.

Authors:  David W Bates; Gilad J Kuperman; Samuel Wang; Tejal Gandhi; Anne Kittler; Lynn Volk; Cynthia Spurr; Ramin Khorasani; Milenko Tanasijevic; Blackford Middleton
Journal:  J Am Med Inform Assoc       Date:  2003-08-04       Impact factor: 4.497

2.  Effects of current and future information technologies on the health care workforce.

Authors:  Daniel R Masys
Journal:  Health Aff (Millwood)       Date:  2002 Sep-Oct       Impact factor: 6.301

3.  Analysis of gene expression patterns and chromosomal changes associated with aging.

Authors:  Jochen B Geigl; Sabine Langer; Simone Barwisch; Katrin Pfleghaar; Gaby Lederer; Michael R Speicher
Journal:  Cancer Res       Date:  2004-12-01       Impact factor: 12.701

Review 4.  The genome-enabled electronic medical record.

Authors:  M A Hoffman
Journal:  J Biomed Inform       Date:  2006-03-15       Impact factor: 6.317

Review 5.  Picture archiving and communication systems: an overview.

Authors:  R H Choplin; J M Boehme; C D Maynard
Journal:  Radiographics       Date:  1992-01       Impact factor: 5.333

6.  Evaluation of factors affecting awareness of and willingness to participate in cancer clinical trials.

Authors:  Primo N Lara; Debora A Paterniti; Christine Chiechi; Corinne Turrell; Claudia Morain; Nora Horan; Lisa Montell; Jose Gonzalez; Sharon Davis; Ari Umutyan; Cynthia L Martel; David R Gandara; Ted Wun; Laurel A Beckett; Moon S Chen
Journal:  J Clin Oncol       Date:  2005-12-20       Impact factor: 44.544

7.  Incorporating personalized gene sequence variants, molecular genetics knowledge, and health knowledge into an EHR prototype based on the Continuity of Care Record standard.

Authors:  Xia Jing; Stephen Kay; Thomas Marley; Nicholas R Hardiker; James J Cimino
Journal:  J Biomed Inform       Date:  2011-09-17       Impact factor: 6.317

8.  Factors affecting general practitioners' recruitment of patients into a prospective study.

Authors:  V Peto; A Coulter; A Bond
Journal:  Fam Pract       Date:  1993-06       Impact factor: 2.267

9.  The sequence of the human genome.

Authors:  J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; H O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; J R Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G Subramanian; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; A G Clark; J Nadeau; V A McKusick; N Zinder; A J Levine; R J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; S Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; S Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; D Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; E Suh; R Thomas; N N Tint; S Tse; C Vech; G Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; J F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Deslattes Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

10.  The diploid genome sequence of an individual human.

Authors:  Samuel Levy; Granger Sutton; Pauline C Ng; Lars Feuk; Aaron L Halpern; Brian P Walenz; Nelson Axelrod; Jiaqi Huang; Ewen F Kirkness; Gennady Denisov; Yuan Lin; Jeffrey R MacDonald; Andy Wing Chun Pang; Mary Shago; Timothy B Stockwell; Alexia Tsiamouri; Vineet Bafna; Vikas Bansal; Saul A Kravitz; Dana A Busam; Karen Y Beeson; Tina C McIntosh; Karin A Remington; Josep F Abril; John Gill; Jon Borman; Yu-Hui Rogers; Marvin E Frazier; Stephen W Scherer; Robert L Strausberg; J Craig Venter
Journal:  PLoS Biol       Date:  2007-09-04       Impact factor: 8.029
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  51 in total

1.  Automatic Placement of Genomic Research Results in Medical Records: Do Researchers Have a Duty? Should Participants Have a Choice?

Authors:  Anya E R Prince; John M Conley; Arlene M Davis; Gabriel Lázaro-Muñoz; R Jean Cadigan
Journal:  J Law Med Ethics       Date:  2015       Impact factor: 1.718

2.  An Extended SNOMED CT Concept Model for Observations in Molecular Genetics.

Authors:  James R Campbell; Geoffrey Talmon; Allison Cushman-Vokoun; Daniel Karlsson; W Scott Campbell
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

3.  Preserving an integrated view of informatics.

Authors:  Elmer V Bernstam; Jessica D Tenenbaum; Gilad J Kuperman
Journal:  J Am Med Inform Assoc       Date:  2013-11-28       Impact factor: 4.497

4.  FHIR Lab Reports: using SMART on FHIR and CDS Hooks to increase the clinical utility of pharmacogenomic laboratory test results.

Authors:  Michael Watkins; Karen Eilbeck
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2020-05-30

5.  Report of the AMIA EHR-2020 Task Force on the status and future direction of EHRs.

Authors:  Thomas H Payne; Sarah Corley; Theresa A Cullen; Tejal K Gandhi; Linda Harrington; Gilad J Kuperman; John E Mattison; David P McCallie; Clement J McDonald; Paul C Tang; William M Tierney; Charlotte Weaver; Charlene R Weir; Michael H Zaroukian
Journal:  J Am Med Inform Assoc       Date:  2015-05-28       Impact factor: 4.497

6.  CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.

Authors:  Brian H Shirts; Joseph S Salama; Samuel J Aronson; Wendy K Chung; Stacy W Gray; Lucia A Hindorff; Gail P Jarvik; Sharon E Plon; Elena M Stoffel; Peter Z Tarczy-Hornoch; Eliezer M Van Allen; Karen E Weck; Christopher G Chute; Robert R Freimuth; Robert W Grundmeier; Andrea L Hartzler; Rongling Li; Peggy L Peissig; Josh F Peterson; Luke V Rasmussen; Justin B Starren; Marc S Williams; Casey L Overby
Journal:  J Am Med Inform Assoc       Date:  2015-07-03       Impact factor: 4.497

Review 7.  Incorporating Pharmacogenomics into Health Information Technology, Electronic Health Record and Decision Support System: An Overview.

Authors:  Abdullah Alanazi
Journal:  J Med Syst       Date:  2016-12-17       Impact factor: 4.460

8.  The future state of clinical data capture and documentation: a report from AMIA's 2011 Policy Meeting.

Authors:  Caitlin M Cusack; George Hripcsak; Meryl Bloomrosen; S Trent Rosenbloom; Charlotte A Weaver; Adam Wright; David K Vawdrey; Jim Walker; Lena Mamykina
Journal:  J Am Med Inform Assoc       Date:  2012-09-08       Impact factor: 4.497

9.  Characterizing genetic variants for clinical action.

Authors:  Erin M Ramos; Corina Din-Lovinescu; Jonathan S Berg; Lisa D Brooks; Audrey Duncanson; Michael Dunn; Peter Good; Tim J P Hubbard; Gail P Jarvik; Christopher O'Donnell; Stephen T Sherry; Naomi Aronson; Leslie G Biesecker; Bruce Blumberg; Ned Calonge; Helen M Colhoun; Robert S Epstein; Paul Flicek; Erynn S Gordon; Eric D Green; Robert C Green; Matthew Hurles; Kensaku Kawamoto; William Knaus; David H Ledbetter; Howard P Levy; Elaine Lyon; Donna Maglott; Howard L McLeod; Nazneen Rahman; Gurvaneet Randhawa; Catherine Wicklund; Teri A Manolio; Rex L Chisholm; Marc S Williams
Journal:  Am J Med Genet C Semin Med Genet       Date:  2014-03-13       Impact factor: 3.908

10.  Merging Electronic Health Record Data and Genomics for Cardiovascular Research: A Science Advisory From the American Heart Association.

Authors:  Jennifer L Hall; John J Ryan; Bruce E Bray; Candice Brown; David Lanfear; L Kristin Newby; Mary V Relling; Neil J Risch; Dan M Roden; Stanley Y Shaw; James E Tcheng; Jessica Tenenbaum; Thomas N Wang; William S Weintraub
Journal:  Circ Cardiovasc Genet       Date:  2016-03-14
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