| Literature DB >> 22220132 |
P C W Van der Berg1, Hendrik G Visser, Andreas Roodt.
Abstract
The title compound, C(19)H(9)N(5)O(4), has crystallographically imposed twofold rotational symmetry. The asymmetric unit contains one half-mol-ecule. The crystal structure is stabilized by π-π stacking of inversion-related pyrrolo-[3,4-b]pyridine rings, with a centroid-centroid distance between stacked pyridines of 3.6960 (8) Å. The dihedral angle between the central pyridine ring and the pyrrolo-pyridine side rings is 77.86 (2)° while the angle between the two side chains is 60.87 (2)°.Entities:
Year: 2011 PMID: 22220132 PMCID: PMC3247514 DOI: 10.1107/S160053681104414X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C19H9N5O4 | |
| Monoclinic, | Mo |
| Cell parameters from 6738 reflections | |
| θ = 2.7–28.3° | |
| µ = 0.11 mm−1 | |
| β = 108.752 (2)° | |
| Cuboid, colourless | |
| 0.34 × 0.29 × 0.27 mm |
| Bruker X8 APEXII 4K KappaCCD diffractometer | 1920 independent reflections |
| Radiation source: fine-focus sealed tube | 1717 reflections with |
| graphite | |
| ω and φ scans | θmax = 28°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 12803 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1920 reflections | (Δ/σ)max < 0.001 |
| 128 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Experimental. The intensity data were collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1758 frames were collected with a frame width of 0.5° covering up to θ = 28.00° with 99.3% completeness accomplished. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.05122 (6) | 0.18475 (11) | 0.00789 (5) | 0.0226 (2) | |
| O2 | 0.22325 (6) | 0.31769 (14) | 0.24267 (6) | 0.0327 (2) | |
| N1 | 0 | 0.22247 (19) | 0.25 | 0.0206 (3) | |
| N2 | 0.07684 (7) | 0.22769 (13) | 0.13958 (6) | 0.0209 (2) | |
| N3 | 0.07688 (7) | 0.39842 (13) | −0.07379 (6) | 0.0212 (2) | |
| C7 | 0.17897 (8) | 0.39008 (15) | 0.08242 (7) | 0.0210 (2) | |
| C4 | 0.02795 (8) | 0.24566 (15) | 0.04720 (7) | 0.0186 (2) | |
| C10 | 0.15034 (8) | 0.48687 (16) | −0.09009 (8) | 0.0231 (2) | |
| H10 | 0.1419 | 0.5224 | −0.149 | 0.028* | |
| C6 | 0.16835 (8) | 0.31349 (16) | 0.16665 (8) | 0.0232 (2) | |
| C5 | 0.09539 (8) | 0.35189 (15) | 0.01192 (7) | 0.0184 (2) | |
| C8 | 0.25407 (8) | 0.48175 (16) | 0.06507 (8) | 0.0249 (3) | |
| H8 | 0.3115 | 0.5102 | 0.1104 | 0.03* | |
| C9 | 0.23809 (8) | 0.52873 (16) | −0.02460 (8) | 0.0246 (3) | |
| H9 | 0.2863 | 0.5884 | −0.0407 | 0.029* | |
| C3 | 0.03783 (8) | 0.12612 (16) | 0.19763 (7) | 0.0205 (2) | |
| C2 | 0.04021 (8) | −0.06106 (16) | 0.19451 (7) | 0.0228 (2) | |
| H2 | 0.0678 | −0.1208 | 0.1565 | 0.027* | |
| C1 | 0 | −0.1562 (2) | 0.25 | 0.0237 (3) | |
| H1 | 0 | −0.282 | 0.25 | 0.028* |
| O1 | 0.0175 (4) | 0.0269 (4) | 0.0224 (4) | −0.0041 (3) | 0.0052 (3) | −0.0019 (3) |
| O2 | 0.0241 (5) | 0.0474 (6) | 0.0219 (4) | −0.0071 (4) | 0.0010 (4) | −0.0015 (4) |
| N1 | 0.0173 (6) | 0.0254 (7) | 0.0177 (6) | 0 | 0.0037 (5) | 0 |
| N2 | 0.0179 (5) | 0.0265 (5) | 0.0180 (4) | −0.0026 (4) | 0.0053 (4) | −0.0012 (4) |
| N3 | 0.0210 (5) | 0.0210 (5) | 0.0226 (5) | 0.0000 (4) | 0.0084 (4) | −0.0002 (4) |
| C7 | 0.0184 (5) | 0.0217 (5) | 0.0223 (5) | 0.0000 (4) | 0.0059 (4) | −0.0032 (4) |
| C4 | 0.0182 (5) | 0.0193 (5) | 0.0187 (5) | 0.0010 (4) | 0.0064 (4) | −0.0017 (4) |
| C10 | 0.0250 (6) | 0.0208 (5) | 0.0262 (5) | 0.0007 (4) | 0.0120 (5) | 0.0008 (4) |
| C6 | 0.0189 (5) | 0.0268 (6) | 0.0230 (5) | −0.0019 (4) | 0.0053 (4) | −0.0033 (4) |
| C5 | 0.0162 (5) | 0.0176 (5) | 0.0221 (5) | 0.0005 (4) | 0.0070 (4) | −0.0027 (4) |
| C8 | 0.0177 (5) | 0.0251 (6) | 0.0306 (6) | −0.0027 (4) | 0.0062 (5) | −0.0037 (5) |
| C9 | 0.0214 (5) | 0.0206 (5) | 0.0352 (6) | −0.0021 (4) | 0.0141 (5) | −0.0011 (5) |
| C3 | 0.0168 (5) | 0.0271 (6) | 0.0162 (5) | −0.0012 (4) | 0.0033 (4) | −0.0001 (4) |
| C2 | 0.0227 (5) | 0.0272 (6) | 0.0168 (5) | 0.0012 (4) | 0.0043 (4) | −0.0023 (4) |
| C1 | 0.0273 (8) | 0.0232 (8) | 0.0179 (7) | 0 | 0.0036 (6) | 0 |
| O1—C4 | 1.2047 (13) | C4—C5 | 1.4944 (15) |
| O2—C6 | 1.2033 (14) | C10—C9 | 1.3915 (17) |
| N1—C3 | 1.3322 (13) | C10—H10 | 0.93 |
| N1—C3i | 1.3322 (13) | C8—C9 | 1.3938 (17) |
| N2—C4 | 1.4001 (14) | C8—H8 | 0.93 |
| N2—C6 | 1.4105 (14) | C9—H9 | 0.93 |
| N2—C3 | 1.4306 (14) | C3—C2 | 1.3851 (17) |
| N3—C5 | 1.3286 (14) | C2—C1 | 1.3860 (14) |
| N3—C10 | 1.3450 (15) | C2—H2 | 0.93 |
| C7—C5 | 1.3840 (15) | C1—C2i | 1.3860 (14) |
| C7—C8 | 1.3843 (16) | C1—H1 | 0.93 |
| C7—C6 | 1.4904 (16) | ||
| C3—N1—C3i | 115.37 (14) | N3—C5—C4 | 124.55 (10) |
| C4—N2—C6 | 112.63 (9) | C7—C5—C4 | 108.86 (9) |
| C4—N2—C3 | 122.37 (9) | C7—C8—C9 | 115.73 (11) |
| C6—N2—C3 | 124.95 (9) | C7—C8—H8 | 122.1 |
| C5—N3—C10 | 113.78 (10) | C9—C8—H8 | 122.1 |
| C5—C7—C8 | 119.22 (10) | C10—C9—C8 | 120.36 (11) |
| C5—C7—C6 | 108.44 (10) | C10—C9—H9 | 119.8 |
| C8—C7—C6 | 132.32 (10) | C8—C9—H9 | 119.8 |
| O1—C4—N2 | 125.30 (10) | N1—C3—C2 | 125.15 (11) |
| O1—C4—C5 | 129.75 (10) | N1—C3—N2 | 116.02 (10) |
| N2—C4—C5 | 104.95 (9) | C2—C3—N2 | 118.82 (10) |
| N3—C10—C9 | 124.28 (11) | C3—C2—C1 | 117.65 (11) |
| N3—C10—H10 | 117.9 | C3—C2—H2 | 121.2 |
| C9—C10—H10 | 117.9 | C1—C2—H2 | 121.2 |
| O2—C6—N2 | 124.82 (11) | C2—C1—C2i | 119.04 (16) |
| O2—C6—C7 | 130.09 (11) | C2—C1—H1 | 120.5 |
| N2—C6—C7 | 105.09 (9) | C2i—C1—H1 | 120.5 |
| N3—C5—C7 | 126.59 (10) |