Literature DB >> 22220132

6,6'-(Pyridine-2,6-di-yl)bis-(pyrrolo-[3,4-b]pyridine-5,7-dione).

P C W Van der Berg1, Hendrik G Visser, Andreas Roodt.   

Abstract

The title compound, C(19)H(9)N(5)O(4), has crystallographically imposed twofold rotational symmetry. The asymmetric unit contains one half-mol-ecule. The crystal structure is stabilized by π-π stacking of inversion-related pyrrolo-[3,4-b]pyridine rings, with a centroid-centroid distance between stacked pyridines of 3.6960 (8) Å. The dihedral angle between the central pyridine ring and the pyrrolo-pyridine side rings is 77.86 (2)° while the angle between the two side chains is 60.87 (2)°.

Entities:  

Year:  2011        PMID: 22220132      PMCID: PMC3247514          DOI: 10.1107/S160053681104414X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Jain et al. (2004 ▶). For related metal complexes, see: Schutte et al. (2009 ▶, 2010 ▶); Brink et al. (2011 ▶).

Experimental

Crystal data

C19H9N5O4 M = 371.31 Monoclinic, a = 14.539 (1) Å b = 7.391 (1) Å c = 15.686 (1) Å β = 108.752 (2)° V = 1596.1 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.34 × 0.29 × 0.27 mm

Data collection

Bruker X8 APEXII 4K KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.681, T max = 0.746 12803 measured reflections 1920 independent reflections 1717 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.091 S = 1.06 1920 reflections 128 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104414X/pk2352sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104414X/pk2352Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681104414X/pk2352Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H9N5O4F(000) = 760
Mr = 371.31Dx = 1.545 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 14.539 (1) ÅCell parameters from 6738 reflections
b = 7.391 (1) Åθ = 2.7–28.3°
c = 15.686 (1) ŵ = 0.11 mm1
β = 108.752 (2)°T = 100 K
V = 1596.1 (3) Å3Cuboid, colourless
Z = 40.34 × 0.29 × 0.27 mm
Bruker X8 APEXII 4K KappaCCD diffractometer1920 independent reflections
Radiation source: fine-focus sealed tube1717 reflections with I > 2σ(I)
graphiteRint = 0.024
ω and φ scansθmax = 28°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −19→15
Tmin = 0.681, Tmax = 0.746k = −9→9
12803 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0432P)2 + 1.2599P] where P = (Fo2 + 2Fc2)/3
1920 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The intensity data were collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1758 frames were collected with a frame width of 0.5° covering up to θ = 28.00° with 99.3% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.05122 (6)0.18475 (11)0.00789 (5)0.0226 (2)
O20.22325 (6)0.31769 (14)0.24267 (6)0.0327 (2)
N100.22247 (19)0.250.0206 (3)
N20.07684 (7)0.22769 (13)0.13958 (6)0.0209 (2)
N30.07688 (7)0.39842 (13)−0.07379 (6)0.0212 (2)
C70.17897 (8)0.39008 (15)0.08242 (7)0.0210 (2)
C40.02795 (8)0.24566 (15)0.04720 (7)0.0186 (2)
C100.15034 (8)0.48687 (16)−0.09009 (8)0.0231 (2)
H100.14190.5224−0.1490.028*
C60.16835 (8)0.31349 (16)0.16665 (8)0.0232 (2)
C50.09539 (8)0.35189 (15)0.01192 (7)0.0184 (2)
C80.25407 (8)0.48175 (16)0.06507 (8)0.0249 (3)
H80.31150.51020.11040.03*
C90.23809 (8)0.52873 (16)−0.02460 (8)0.0246 (3)
H90.28630.5884−0.04070.029*
C30.03783 (8)0.12612 (16)0.19763 (7)0.0205 (2)
C20.04021 (8)−0.06106 (16)0.19451 (7)0.0228 (2)
H20.0678−0.12080.15650.027*
C10−0.1562 (2)0.250.0237 (3)
H10−0.2820.250.028*
U11U22U33U12U13U23
O10.0175 (4)0.0269 (4)0.0224 (4)−0.0041 (3)0.0052 (3)−0.0019 (3)
O20.0241 (5)0.0474 (6)0.0219 (4)−0.0071 (4)0.0010 (4)−0.0015 (4)
N10.0173 (6)0.0254 (7)0.0177 (6)00.0037 (5)0
N20.0179 (5)0.0265 (5)0.0180 (4)−0.0026 (4)0.0053 (4)−0.0012 (4)
N30.0210 (5)0.0210 (5)0.0226 (5)0.0000 (4)0.0084 (4)−0.0002 (4)
C70.0184 (5)0.0217 (5)0.0223 (5)0.0000 (4)0.0059 (4)−0.0032 (4)
C40.0182 (5)0.0193 (5)0.0187 (5)0.0010 (4)0.0064 (4)−0.0017 (4)
C100.0250 (6)0.0208 (5)0.0262 (5)0.0007 (4)0.0120 (5)0.0008 (4)
C60.0189 (5)0.0268 (6)0.0230 (5)−0.0019 (4)0.0053 (4)−0.0033 (4)
C50.0162 (5)0.0176 (5)0.0221 (5)0.0005 (4)0.0070 (4)−0.0027 (4)
C80.0177 (5)0.0251 (6)0.0306 (6)−0.0027 (4)0.0062 (5)−0.0037 (5)
C90.0214 (5)0.0206 (5)0.0352 (6)−0.0021 (4)0.0141 (5)−0.0011 (5)
C30.0168 (5)0.0271 (6)0.0162 (5)−0.0012 (4)0.0033 (4)−0.0001 (4)
C20.0227 (5)0.0272 (6)0.0168 (5)0.0012 (4)0.0043 (4)−0.0023 (4)
C10.0273 (8)0.0232 (8)0.0179 (7)00.0036 (6)0
O1—C41.2047 (13)C4—C51.4944 (15)
O2—C61.2033 (14)C10—C91.3915 (17)
N1—C31.3322 (13)C10—H100.93
N1—C3i1.3322 (13)C8—C91.3938 (17)
N2—C41.4001 (14)C8—H80.93
N2—C61.4105 (14)C9—H90.93
N2—C31.4306 (14)C3—C21.3851 (17)
N3—C51.3286 (14)C2—C11.3860 (14)
N3—C101.3450 (15)C2—H20.93
C7—C51.3840 (15)C1—C2i1.3860 (14)
C7—C81.3843 (16)C1—H10.93
C7—C61.4904 (16)
C3—N1—C3i115.37 (14)N3—C5—C4124.55 (10)
C4—N2—C6112.63 (9)C7—C5—C4108.86 (9)
C4—N2—C3122.37 (9)C7—C8—C9115.73 (11)
C6—N2—C3124.95 (9)C7—C8—H8122.1
C5—N3—C10113.78 (10)C9—C8—H8122.1
C5—C7—C8119.22 (10)C10—C9—C8120.36 (11)
C5—C7—C6108.44 (10)C10—C9—H9119.8
C8—C7—C6132.32 (10)C8—C9—H9119.8
O1—C4—N2125.30 (10)N1—C3—C2125.15 (11)
O1—C4—C5129.75 (10)N1—C3—N2116.02 (10)
N2—C4—C5104.95 (9)C2—C3—N2118.82 (10)
N3—C10—C9124.28 (11)C3—C2—C1117.65 (11)
N3—C10—H10117.9C3—C2—H2121.2
C9—C10—H10117.9C1—C2—H2121.2
O2—C6—N2124.82 (11)C2—C1—C2i119.04 (16)
O2—C6—C7130.09 (11)C2—C1—H1120.5
N2—C6—C7105.09 (9)C2i—C1—H1120.5
N3—C5—C7126.59 (10)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New pyridine carboxamide ligands and their complexation to copper(II). X-Ray crystal structures of mono-, di, tri- and tetranuclear copper complexes.

Authors:  Sneh L Jain; Pravat Bhattacharyya; Heather L Milton; Alexandra M Z Slawin; Joe A Crayston; J Derek Woollins
Journal:  Dalton Trans       Date:  2004-02-23       Impact factor: 4.390

3.  [N,N-Bis(diphenyl-phosphino)propyl-amine-κP,P]bromidotricarbonyl-rhenium(I).

Authors:  Marietjie Schutte; Hendrik G Visser; Alice Brink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

4.  Tetra-ethyl-ammonium bromidotricarbon-yl(tropolonato)rhenate(I).

Authors:  Marietjie Schutte; Hendrik G Visser; Andreas Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  4 in total
  2 in total

1.  N,N'-(4,5-Dimethyl-1,2-phenyl-ene)bis-(pyridine-2-carboxamide).

Authors:  Phillipus C W Van der Berg; Hendrik G Visser; Andreas Roodt; Theunis J Muller
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23

2.  2-Amino-6-(quinoline-2-carboxamido)-pyridinium nitrate.

Authors:  Phillipus C W Van der Berg; Hendrik G Visser; Andreas Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-31
  2 in total

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