Literature DB >> 22969680

2-Amino-6-(quinoline-2-carboxamido)-pyridinium nitrate.

Phillipus C W Van der Berg1, Hendrik G Visser, Andreas Roodt.   

Abstract

In the title salt, C(15)H(13)N(4)O(+)·NO(3) (-), an extensive network of N-H⋯N, N-H⋯O and C-H⋯O hydrogen-bond inter-actions are observed throughout the structure. Further stabilization is obtained by π-π stacking inter-actions between inversion-related quinoline systems and inversion-related pyridine rings, with respective centroid-centroid distances of 3.5866 (6) and 3.3980 (6) Å.

Entities:  

Year:  2012        PMID: 22969680      PMCID: PMC3435834          DOI: 10.1107/S1600536812036562

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related radiopharmaceutical structures, see: Al-Dajani et al. (2010 ▶); Jain et al. (2004 ▶); Van der Berg et al. (2011 ▶).

Experimental

Crystal data

C15H13N4O+·NO3 M = 327.30 Monoclinic, a = 8.183 (2) Å b = 11.768 (3) Å c = 14.979 (4) Å β = 98.37 (1)° V = 1427.1 (6) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.49 × 0.41 × 0.31 mm

Data collection

Bruker X8 APEXII KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.990, T max = 0.994 26710 measured reflections 3555 independent reflections 3180 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.1 S = 1.04 3555 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812036562/pk2439sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036562/pk2439Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812036562/pk2439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N4O+·NO3F(000) = 680
Mr = 327.30Dx = 1.523 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9936 reflections
a = 8.183 (2) Åθ = 2.2–28.3°
b = 11.768 (3) ŵ = 0.12 mm1
c = 14.979 (4) ÅT = 100 K
β = 98.37 (1)°Cuboid, yellow
V = 1427.1 (6) Å30.49 × 0.41 × 0.31 mm
Z = 4
Bruker X8 APEXII KappaCCD diffractometer3555 independent reflections
Radiation source: sealed tube3180 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.990, Tmax = 0.994k = −15→15
26710 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.1H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0537P)2 + 0.6672P] where P = (Fo2 + 2Fc2)/3
3555 reflections(Δ/σ)max = 0.001
233 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The intensity data were collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1759 frames were collected with a frame width of 0.5° covering up to θ = 28.28° with 100.00% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C50.44014 (13)0.29849 (9)1.00107 (7)0.0136 (2)
C40.36313 (14)0.35271 (9)0.92503 (7)0.0165 (2)
H40.36740.3230.86790.02*
C30.27835 (14)0.45365 (10)0.93606 (8)0.0190 (2)
H30.22430.49090.88540.023*
C20.27319 (14)0.49912 (10)1.02018 (8)0.0191 (2)
H20.21650.56651.02630.023*
C10.35435 (13)0.44278 (9)1.09694 (8)0.0161 (2)
C60.61016 (12)0.13855 (9)1.06647 (7)0.0130 (2)
C70.70961 (12)0.03990 (9)1.04078 (7)0.0128 (2)
C80.80954 (13)−0.01866 (9)1.11085 (7)0.0148 (2)
H80.8120.00281.17080.018*
C90.90254 (13)−0.10779 (9)1.08810 (7)0.0156 (2)
H90.9709−0.14751.13250.019*
C100.89350 (13)−0.13878 (9)0.99620 (7)0.0143 (2)
C110.98613 (14)−0.23014 (10)0.96740 (8)0.0182 (2)
H111.0548−0.27271.00980.022*
C120.97515 (14)−0.25610 (10)0.87763 (8)0.0208 (2)
H121.0371−0.31570.85930.025*
C130.86987 (14)−0.19264 (10)0.81263 (8)0.0196 (2)
H130.8633−0.21110.75180.024*
C140.77756 (14)−0.10438 (9)0.83805 (7)0.0165 (2)
H140.7078−0.0640.79470.02*
C150.78850 (13)−0.07462 (9)0.93054 (7)0.0133 (2)
N10.36061 (13)0.48153 (9)1.18100 (7)0.0199 (2)
N20.43161 (11)0.34266 (8)1.08430 (6)0.01391 (19)
N30.53164 (11)0.20051 (8)0.99536 (6)0.01377 (19)
N40.69803 (11)0.01543 (7)0.95409 (6)0.01317 (18)
N50.68666 (12)0.29972 (8)1.29263 (6)0.01620 (19)
O10.60217 (10)0.16082 (7)1.14574 (5)0.01639 (17)
O20.75498 (11)0.36208 (7)1.24246 (6)0.0224 (2)
O30.53418 (10)0.31398 (7)1.29794 (5)0.01974 (18)
O40.76463 (11)0.22297 (7)1.33845 (6)0.0228 (2)
H1B0.326 (2)0.5477 (16)1.1861 (12)0.033 (4)*
H1A0.423 (2)0.4444 (15)1.2254 (12)0.031 (4)*
H2A0.481 (2)0.3072 (15)1.1296 (12)0.032 (4)*
H3A0.5452 (19)0.1790 (14)0.9423 (11)0.026 (4)*
U11U22U33U12U13U23
C50.0144 (4)0.0117 (5)0.0151 (5)−0.0008 (4)0.0036 (4)−0.0006 (4)
C40.0196 (5)0.0159 (5)0.0139 (5)0.0001 (4)0.0027 (4)0.0000 (4)
C30.0215 (5)0.0168 (5)0.0182 (5)0.0031 (4)0.0017 (4)0.0045 (4)
C20.0230 (5)0.0134 (5)0.0212 (6)0.0051 (4)0.0045 (4)0.0017 (4)
C10.0182 (5)0.0131 (5)0.0178 (5)0.0006 (4)0.0060 (4)−0.0002 (4)
C60.0127 (4)0.0112 (5)0.0152 (5)−0.0015 (4)0.0018 (4)−0.0011 (4)
C70.0125 (5)0.0111 (4)0.0151 (5)−0.0010 (3)0.0027 (4)−0.0007 (4)
C80.0152 (5)0.0165 (5)0.0129 (5)−0.0006 (4)0.0025 (4)−0.0002 (4)
C90.0141 (5)0.0165 (5)0.0158 (5)0.0010 (4)0.0006 (4)0.0031 (4)
C100.0125 (5)0.0130 (5)0.0177 (5)−0.0005 (4)0.0034 (4)0.0004 (4)
C110.0164 (5)0.0160 (5)0.0219 (6)0.0037 (4)0.0018 (4)0.0007 (4)
C120.0198 (5)0.0165 (5)0.0268 (6)0.0041 (4)0.0062 (4)−0.0045 (4)
C130.0223 (5)0.0198 (5)0.0173 (5)0.0010 (4)0.0049 (4)−0.0043 (4)
C140.0191 (5)0.0153 (5)0.0150 (5)0.0006 (4)0.0018 (4)−0.0003 (4)
C150.0130 (4)0.0115 (5)0.0156 (5)−0.0008 (3)0.0035 (4)−0.0001 (4)
N10.0288 (5)0.0151 (5)0.0166 (5)0.0058 (4)0.0059 (4)−0.0011 (4)
N20.0171 (4)0.0119 (4)0.0129 (4)0.0021 (3)0.0027 (3)0.0005 (3)
N30.0175 (4)0.0120 (4)0.0122 (4)0.0018 (3)0.0033 (3)−0.0009 (3)
N40.0142 (4)0.0111 (4)0.0144 (4)−0.0003 (3)0.0026 (3)−0.0008 (3)
N50.0221 (5)0.0142 (4)0.0121 (4)−0.0034 (3)0.0016 (3)−0.0018 (3)
O10.0202 (4)0.0155 (4)0.0133 (4)0.0019 (3)0.0020 (3)−0.0023 (3)
O20.0317 (5)0.0184 (4)0.0195 (4)−0.0055 (3)0.0111 (3)0.0005 (3)
O30.0196 (4)0.0234 (4)0.0163 (4)−0.0020 (3)0.0031 (3)−0.0002 (3)
O40.0269 (4)0.0182 (4)0.0206 (4)−0.0006 (3)−0.0052 (3)0.0025 (3)
C5—N21.3618 (14)C9—H90.93
C5—C41.3758 (15)C10—C111.4183 (15)
C5—N31.3842 (13)C10—C151.4246 (15)
C4—C31.3974 (15)C11—C121.3690 (17)
C4—H40.93C11—H110.93
C3—C21.3753 (16)C12—C131.4156 (17)
C3—H30.93C12—H120.93
C2—C11.4073 (16)C13—C141.3704 (15)
C2—H20.93C13—H130.93
C1—N11.3332 (15)C14—C151.4191 (15)
C1—N21.3633 (14)C14—H140.93
C6—O11.2270 (13)C15—N41.3680 (13)
C6—N31.3711 (14)N1—H1B0.836 (19)
C6—C71.4997 (14)N1—H1A0.892 (18)
C7—N41.3200 (13)N2—H2A0.848 (19)
C7—C81.4125 (14)N3—H3A0.857 (17)
C8—C91.3679 (15)N5—O21.2402 (12)
C8—H80.93N5—O41.2516 (13)
C9—C101.4155 (15)N5—O31.2729 (13)
N2—C5—C4120.18 (10)C11—C10—C15119.15 (10)
N2—C5—N3118.34 (9)C12—C11—C10120.42 (10)
C4—C5—N3121.46 (10)C12—C11—H11119.8
C5—C4—C3118.15 (10)C10—C11—H11119.8
C5—C4—H4120.9C11—C12—C13120.28 (10)
C3—C4—H4120.9C11—C12—H12119.9
C2—C3—C4121.40 (10)C13—C12—H12119.9
C2—C3—H3119.3C14—C13—C12120.90 (10)
C4—C3—H3119.3C14—C13—H13119.5
C3—C2—C1119.44 (10)C12—C13—H13119.5
C3—C2—H2120.3C13—C14—C15119.95 (10)
C1—C2—H2120.3C13—C14—H14120
N1—C1—N2118.16 (10)C15—C14—H14120
N1—C1—C2124.00 (10)N4—C15—C14118.90 (10)
N2—C1—C2117.84 (10)N4—C15—C10121.82 (10)
O1—C6—N3123.59 (10)C14—C15—C10119.28 (10)
O1—C6—C7121.40 (9)C1—N1—H1B116.0 (12)
N3—C6—C7115.01 (9)C1—N1—H1A118.4 (11)
N4—C7—C8125.13 (10)H1B—N1—H1A123.6 (16)
N4—C7—C6117.22 (9)C5—N2—C1122.93 (10)
C8—C7—C6117.65 (9)C5—N2—H2A117.6 (12)
C9—C8—C7118.16 (10)C1—N2—H2A119.4 (12)
C9—C8—H8120.9C6—N3—C5126.27 (9)
C7—C8—H8120.9C6—N3—H3A117.0 (11)
C8—C9—C10119.18 (10)C5—N3—H3A116.6 (11)
C8—C9—H9120.4C7—N4—C15117.29 (9)
C10—C9—H9120.4O2—N5—O4121.37 (10)
C9—C10—C11122.44 (10)O2—N5—O3119.49 (9)
C9—C10—C15118.40 (9)O4—N5—O3119.14 (9)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.892 (18)2.019 (19)2.8721 (14)159.7 (16)
N1—H1B···O4i0.836 (19)2.204 (19)3.0202 (14)165.1 (16)
N2—H2A···O10.848 (19)1.984 (18)2.6458 (12)134.1 (16)
N2—H2A···O30.848 (19)2.496 (18)3.2058 (12)141.7 (15)
N3—H3A···O3ii0.857 (17)2.153 (17)2.9652 (12)158.2 (15)
N3—H3A···N40.857 (17)2.288 (16)2.6879 (15)108.7 (13)
C4—H4···O3ii0.932.443.1947 (14)138
C11—H11···O4iii0.932.533.3460 (14)147
C12—H12···O2iv0.932.53.2901 (14)142
C14—H14···O2ii0.932.553.1840 (14)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O30.892 (18)2.019 (19)2.8721 (14)159.7 (16)
N1—H1B⋯O4i 0.836 (19)2.204 (19)3.0202 (14)165.1 (16)
N2—H2A⋯O10.848 (19)1.984 (18)2.6458 (12)134.1 (16)
N2—H2A⋯O30.848 (19)2.496 (18)3.2058 (12)141.7 (15)
N3—H3A⋯O3ii 0.857 (17)2.153 (17)2.9652 (12)158.2 (15)
N3—H3A⋯N40.857 (17)2.288 (16)2.6879 (15)108.7 (13)
C4—H4⋯O3ii 0.932.443.1947 (14)138
C11—H11⋯O4iii 0.932.533.3460 (14)147
C12—H12⋯O2iv 0.932.53.2901 (14)142
C14—H14⋯O2ii 0.932.553.1840 (14)126

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New pyridine carboxamide ligands and their complexation to copper(II). X-Ray crystal structures of mono-, di, tri- and tetranuclear copper complexes.

Authors:  Sneh L Jain; Pravat Bhattacharyya; Heather L Milton; Alexandra M Z Slawin; Joe A Crayston; J Derek Woollins
Journal:  Dalton Trans       Date:  2004-02-23       Impact factor: 4.390

3.  2-Amino-6-(2,6-difluoro-benzamido)-pyridinium chloride.

Authors:  Mohammad T M Al-Dajani; Nornisah Mohamed; Habibah A Wahab; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

4.  6,6'-(Pyridine-2,6-di-yl)bis-(pyrrolo-[3,4-b]pyridine-5,7-dione).

Authors:  P C W Van der Berg; Hendrik G Visser; Andreas Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  4 in total

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