Literature DB >> 22969622

N,N'-(4,5-Dimethyl-1,2-phenyl-ene)bis-(pyridine-2-carboxamide).

Phillipus C W Van der Berg1, Hendrik G Visser, Andreas Roodt, Theunis J Muller.   

Abstract

In the title compound, C(20)H(18)N(4)O(2), the dihedral angles between the central benzene ring and the pyridine rings are 57.55 (6) and 22.05 (8)°. The mol-ecular conformation is stabilized by intra-molecular N-H⋯N inter-actions and in the crystal structure an inter-molecular asymmetric cyclic hydrogen-bonding association involving both amide N-H donors and a common amide O-atom acceptor gives a chain extending along the c axis.

Entities:  

Year:  2012        PMID: 22969622      PMCID: PMC3435751          DOI: 10.1107/S1600536812035064

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Jain et al. (2004 ▶); Lin et al. (2001 ▶); Roodt et al. (2011 ▶); Schutte et al. (2011 ▶); Van der Berg et al. (2011 ▶).

Experimental

Crystal data

C20H18N4O2 M = 346.38 Monoclinic, a = 12.1299 (8) Å b = 18.9418 (8) Å c = 7.7549 (4) Å β = 100.375 (4)° V = 1752.65 (17) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.78 × 0.08 × 0.07 mm

Data collection

Bruker X8 APEXII KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.990, T max = 0.994 15674 measured reflections 3860 independent reflections 3529 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.090 S = 1.04 3860 reflections 237 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812035064/zs2225sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812035064/zs2225Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N4O2F(000) = 728
Mr = 346.38Dx = 1.313 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 5487 reflections
a = 12.1299 (8) Åθ = 3.1–28.3°
b = 18.9418 (8) ŵ = 0.09 mm1
c = 7.7549 (4) ÅT = 100 K
β = 100.375 (4)°Needle, colourless
V = 1752.65 (17) Å30.78 × 0.08 × 0.07 mm
Z = 4
Bruker X8 APEXII KappaCCD diffractometer3860 independent reflections
Radiation source: sealed tube3529 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 28°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −16→16
Tmin = 0.990, Tmax = 0.994k = −24→24
15674 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0456P)2 + 0.7043P] where P = (Fo2 + 2Fc2)/3
3860 reflections(Δ/σ)max = 0.001
237 parametersΔρmax = 0.26 e Å3
2 restraintsΔρmin = −0.20 e Å3
Experimental. The intensity data was collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1895 frames was collected with a frame width of 0.5° covering up to θ = 28.29° with 99.9% completeness accomplished.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C60.77131 (13)0.70520 (9)0.3849 (2)0.0204 (3)
C100.34827 (15)0.64314 (11)0.4195 (3)0.0336 (4)
H10A0.28570.61040.41930.050*0.5
H10B0.32460.68150.33610.050*0.5
H10C0.37130.66290.53730.050*0.5
H10D0.36880.69270.44240.050*0.5
H10E0.32980.62170.52570.050*0.5
H10F0.28310.64030.32450.050*0.5
C110.33503 (15)0.48994 (11)0.3373 (3)0.0313 (4)
H11A0.34590.44110.30250.047*0.5
H11B0.27030.51020.25920.047*0.5
H11C0.32180.49080.45830.047*0.5
H11D0.27940.52040.37750.047*0.5
H11E0.3550.45120.42080.047*0.5
H11F0.30350.47060.22170.047*0.5
C150.77150 (13)0.44582 (8)0.2917 (2)0.0202 (2)
N20.73461 (11)0.64533 (7)0.2985 (2)0.0221 (3)
N30.72056 (11)0.50299 (7)0.21172 (19)0.0190 (3)
O10.72183 (10)0.73844 (7)0.48200 (17)0.0277 (3)
O20.74071 (9)0.41395 (6)0.41242 (15)0.0202 (2)
H2'0.7803 (17)0.6283 (10)0.237 (3)0.027 (5)*
H3'0.7438 (16)0.5199 (10)0.122 (3)0.024 (5)*
C11.03548 (14)0.71236 (10)0.2222 (2)0.0283 (4)
H11.07310.68530.14740.034*
C21.08852 (15)0.77174 (10)0.3009 (2)0.0293 (4)
H21.16030.78520.27950.035*
C31.03552 (16)0.81103 (10)0.4107 (2)0.0289 (4)
H31.070.85210.46680.035*
C40.93064 (15)0.78956 (9)0.4380 (2)0.0249 (4)
H40.89180.81540.51340.03*
C50.88403 (13)0.72965 (9)0.3529 (2)0.0197 (3)
C70.63512 (12)0.60847 (8)0.3093 (2)0.0192 (3)
C80.54288 (15)0.64111 (9)0.3586 (2)0.0241 (3)
H80.54680.68990.38740.029*
C90.44549 (13)0.60415 (9)0.3667 (2)0.0243 (4)
C120.43827 (14)0.53253 (9)0.3249 (2)0.0235 (3)
C130.53017 (14)0.50011 (9)0.2728 (2)0.0215 (3)
H130.52580.45150.24210.026*
C140.62761 (12)0.53699 (8)0.2646 (2)0.0189 (3)
C160.87530 (13)0.42368 (9)0.2250 (2)0.0189 (3)
C170.93911 (15)0.36937 (9)0.3085 (2)0.0255 (4)
H170.91570.3440.40120.031*
C181.03894 (15)0.35268 (10)0.2530 (3)0.0295 (4)
H181.08590.3160.30790.035*
C191.06792 (15)0.39063 (10)0.1168 (2)0.0283 (4)
H191.13570.38060.07640.034*
C200.99767 (15)0.44332 (10)0.0395 (3)0.0301 (4)
H201.01810.4685−0.0560.036*
N10.93415 (12)0.69083 (8)0.2456 (2)0.0248 (3)
N40.90251 (12)0.46069 (8)0.09200 (19)0.0245 (3)
U11U22U33U12U13U23
C60.0205 (7)0.0210 (8)0.0200 (8)0.0032 (6)0.0050 (6)0.0032 (6)
C100.0211 (8)0.0387 (10)0.0437 (12)0.0041 (7)0.0132 (8)−0.0001 (9)
C110.0227 (8)0.0378 (10)0.0351 (10)−0.0060 (7)0.0102 (8)−0.0020 (8)
C150.0209 (4)0.0201 (5)0.0205 (4)−0.0022 (3)0.0064 (4)−0.0014 (4)
N20.0184 (7)0.0206 (7)0.0304 (8)0.0008 (5)0.0124 (6)−0.0027 (6)
N30.0181 (6)0.0214 (7)0.0192 (7)−0.0007 (5)0.0081 (5)0.0004 (6)
O10.0252 (6)0.0322 (7)0.0283 (7)0.0007 (5)0.0117 (5)−0.0061 (6)
O20.0209 (4)0.0201 (5)0.0205 (4)−0.0022 (3)0.0064 (4)−0.0014 (4)
C10.0238 (8)0.0362 (10)0.0265 (9)−0.0018 (7)0.0088 (7)−0.0063 (8)
C20.0253 (9)0.0384 (11)0.0253 (9)−0.0092 (7)0.0078 (7)0.0008 (8)
C30.0343 (10)0.0279 (9)0.0243 (9)−0.0102 (7)0.0043 (8)−0.0031 (8)
C40.0291 (9)0.0253 (8)0.0215 (8)−0.0022 (7)0.0079 (7)−0.0008 (7)
C50.0196 (7)0.0191 (8)0.0213 (8)0.0005 (6)0.0061 (6)0.0034 (6)
C70.0168 (7)0.0215 (8)0.0202 (8)−0.0008 (6)0.0060 (6)0.0027 (6)
C80.0212 (7)0.0253 (8)0.0268 (9)0.0037 (7)0.0072 (7)0.0020 (7)
C90.0196 (8)0.0314 (9)0.0232 (8)0.0047 (7)0.0070 (7)0.0027 (7)
C120.0174 (7)0.0329 (9)0.0205 (8)−0.0024 (7)0.0041 (6)0.0035 (7)
C130.0217 (7)0.0238 (8)0.0196 (8)−0.0022 (6)0.0055 (6)−0.0005 (6)
C140.0173 (7)0.0240 (8)0.0158 (8)0.0020 (6)0.0044 (6)0.0014 (6)
C160.0188 (7)0.0188 (7)0.0190 (7)−0.0015 (6)0.0035 (6)−0.0040 (6)
C170.0262 (8)0.0248 (8)0.0274 (9)0.0022 (7)0.0097 (7)0.0020 (7)
C180.0271 (9)0.0278 (9)0.0346 (10)0.0079 (7)0.0079 (8)0.0012 (8)
C190.0210 (8)0.0356 (10)0.0302 (9)0.0049 (7)0.0096 (7)−0.0046 (8)
C200.0274 (9)0.0375 (10)0.0282 (9)0.0030 (7)0.0128 (8)0.0046 (8)
N10.0218 (7)0.0269 (7)0.0275 (8)−0.0029 (6)0.0089 (6)−0.0051 (6)
N40.0231 (7)0.0290 (8)0.0227 (7)0.0031 (6)0.0080 (6)0.0027 (6)
C6—O11.219 (2)C1—H10.95
C6—N21.351 (2)C2—C31.375 (3)
C6—C51.506 (2)C2—H20.95
C10—C91.509 (2)C3—C41.388 (2)
C10—H10A0.98C3—H30.95
C10—H10B0.98C4—C51.381 (2)
C10—H10C0.98C4—H40.95
C10—H10D0.98C5—N11.336 (2)
C10—H10E0.98C7—C81.391 (2)
C10—H10F0.98C7—C141.397 (2)
C11—C121.507 (2)C8—C91.384 (2)
C11—H11A0.98C8—H80.95
C11—H11B0.98C9—C121.394 (2)
C11—H11C0.98C12—C131.395 (2)
C11—H11D0.98C13—C141.384 (2)
C11—H11E0.98C13—H130.95
C11—H11F0.98C16—N41.336 (2)
C15—O21.2274 (19)C16—C171.377 (2)
C15—N31.342 (2)C17—C181.392 (2)
C15—C161.505 (2)C17—H170.95
N2—C71.410 (2)C18—C191.374 (3)
N2—H2'0.86 (2)C18—H180.95
N3—C141.421 (2)C19—C201.378 (3)
N3—H3'0.86 (2)C19—H190.95
C1—N11.338 (2)C20—N41.333 (2)
C1—C21.382 (3)C20—H200.95
O1—C6—N2125.78 (16)C15—N3—H3'119.0 (13)
O1—C6—C5120.35 (15)C14—N3—H3'117.3 (13)
N2—C6—C5113.87 (14)N1—C1—C2123.65 (17)
C9—C10—H10A109.5N1—C1—H1118.2
C9—C10—H10B109.5C2—C1—H1118.2
H10A—C10—H10B109.5C3—C2—C1118.80 (16)
C9—C10—H10C109.5C3—C2—H2120.6
H10A—C10—H10C109.5C1—C2—H2120.6
H10B—C10—H10C109.5C2—C3—C4118.66 (16)
C9—C10—H10D109.5C2—C3—H3120.7
H10A—C10—H10D141.1C4—C3—H3120.7
H10B—C10—H10D56.3C5—C4—C3118.40 (16)
H10C—C10—H10D56.3C5—C4—H4120.8
C9—C10—H10E109.5C3—C4—H4120.8
H10A—C10—H10E56.3N1—C5—C4123.82 (14)
H10B—C10—H10E141.1N1—C5—C6117.49 (14)
H10C—C10—H10E56.3C4—C5—C6118.67 (15)
H10D—C10—H10E109.5C8—C7—C14118.66 (14)
C9—C10—H10F109.5C8—C7—N2122.39 (15)
H10A—C10—H10F56.3C14—C7—N2118.93 (14)
H10B—C10—H10F56.3C9—C8—C7121.53 (15)
H10C—C10—H10F141.1C9—C8—H8119.2
H10D—C10—H10F109.5C7—C8—H8119.2
H10E—C10—H10F109.5C8—C9—C12120.01 (15)
C12—C11—H11A109.5C8—C9—C10118.66 (16)
C12—C11—H11B109.5C12—C9—C10121.33 (16)
H11A—C11—H11B109.5C9—C12—C13118.41 (15)
C12—C11—H11C109.5C9—C12—C11121.62 (16)
H11A—C11—H11C109.5C13—C12—C11119.96 (16)
H11B—C11—H11C109.5C14—C13—C12121.65 (15)
C12—C11—H11D109.5C14—C13—H13119.2
H11A—C11—H11D141.1C12—C13—H13119.2
H11B—C11—H11D56.3C13—C14—C7119.73 (14)
H11C—C11—H11D56.3C13—C14—N3120.85 (14)
C12—C11—H11E109.5C7—C14—N3119.42 (13)
H11A—C11—H11E56.3N4—C16—C17123.97 (15)
H11B—C11—H11E141.1N4—C16—C15117.22 (14)
H11C—C11—H11E56.3C17—C16—C15118.74 (14)
H11D—C11—H11E109.5C16—C17—C18118.08 (16)
C12—C11—H11F109.5C16—C17—H17121
H11A—C11—H11F56.3C18—C17—H17121
H11B—C11—H11F56.3C19—C18—C17118.40 (17)
H11C—C11—H11F141.1C19—C18—H18120.8
H11D—C11—H11F109.5C17—C18—H18120.8
H11E—C11—H11F109.5C18—C19—C20119.32 (16)
O2—C15—N3124.85 (15)C18—C19—H19120.3
O2—C15—C16120.91 (14)C20—C19—H19120.3
N3—C15—C16114.22 (14)N4—C20—C19123.20 (17)
C6—N2—C7126.56 (14)N4—C20—H20118.4
C6—N2—H2'113.8 (13)C19—C20—H20118.4
C7—N2—H2'119.5 (13)C5—N1—C1116.67 (14)
C15—N3—C14123.74 (14)C20—N4—C16117.01 (15)
D—H···AD—HH···AD···AD—H···A
N2—H2′···N10.86 (2)2.20 (2)2.6698 (19)114.2 (16)
N2—H2′···N30.86 (2)2.48 (2)2.777 (2)101.2 (15)
N2—H2′···O2i0.86 (2)2.60 (2)3.2112 (19)129.0 (17)
N3—H3′···O2i0.86 (2)2.05 (2)2.8508 (19)155.5 (18)
N3—H3′···N40.86 (2)2.28 (2)2.6670 (19)107.8 (15)
C8—H8···O10.952.312.877 (2)118
C2—H2···O1ii0.952.593.195 (2)122
C3—H3···O2iii0.952.483.160 (2)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2′⋯N10.86 (2)2.20 (2)2.6698 (19)114.2 (16)
N2—H2′⋯N30.86 (2)2.48 (2)2.777 (2)101.2 (15)
N2—H2′⋯O2i 0.86 (2)2.60 (2)3.2112 (19)129.0 (17)
N3—H3′⋯O2i 0.86 (2)2.05 (2)2.8508 (19)155.5 (18)
N3—H3′⋯N40.86 (2)2.28 (2)2.6670 (19)107.8 (15)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tuning the reactivity in classic low-spin d6 rhenium(I) tricarbonyl radiopharmaceutical synthon by selective bidentate ligand variation (L,L'-Bid; L,L'= N,N', N,O, and O,O' donor atom sets) in fac-[Re(CO)3(L,L'-Bid)(MeOH)]n complexes.

Authors:  Marietjie Schutte; Gerdus Kemp; Hendrik G Visser; Andreas Roodt
Journal:  Inorg Chem       Date:  2011-11-23       Impact factor: 5.165

3.  N,N'-(1,2-phenylene)bis(pyridine-2-carboxamide) and N,N'-(1,2-cyclohexanediyl)bis(pyridine-2-carboxamide) toluene hemisolvate.

Authors:  J Lin ; J Y Zhang ; Y Xu; X K Ke ; Z Guo
Journal:  Acta Crystallogr C       Date:  2001-02       Impact factor: 1.172

4.  New pyridine carboxamide ligands and their complexation to copper(II). X-Ray crystal structures of mono-, di, tri- and tetranuclear copper complexes.

Authors:  Sneh L Jain; Pravat Bhattacharyya; Heather L Milton; Alexandra M Z Slawin; Joe A Crayston; J Derek Woollins
Journal:  Dalton Trans       Date:  2004-02-23       Impact factor: 4.390

5.  6,6'-(Pyridine-2,6-di-yl)bis-(pyrrolo-[3,4-b]pyridine-5,7-dione).

Authors:  P C W Van der Berg; Hendrik G Visser; Andreas Roodt
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  5 in total

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