| Literature DB >> 22969622 |
Phillipus C W Van der Berg1, Hendrik G Visser, Andreas Roodt, Theunis J Muller.
Abstract
In the title compound, C(20)H(18)N(4)O(2), the dihedral angles between the central benzene ring and the pyridine rings are 57.55 (6) and 22.05 (8)°. The mol-ecular conformation is stabilized by intra-molecular N-H⋯N inter-actions and in the crystal structure an inter-molecular asymmetric cyclic hydrogen-bonding association involving both amide N-H donors and a common amide O-atom acceptor gives a chain extending along the c axis.Entities:
Year: 2012 PMID: 22969622 PMCID: PMC3435751 DOI: 10.1107/S1600536812035064
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H18N4O2 | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 5487 reflections |
| θ = 3.1–28.3° | |
| µ = 0.09 mm−1 | |
| β = 100.375 (4)° | Needle, colourless |
| 0.78 × 0.08 × 0.07 mm | |
| Bruker X8 APEXII KappaCCD diffractometer | 3860 independent reflections |
| Radiation source: sealed tube | 3529 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 15674 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3860 reflections | (Δ/σ)max = 0.001 |
| 237 parameters | Δρmax = 0.26 e Å−3 |
| 2 restraints | Δρmin = −0.20 e Å−3 |
| Experimental. The intensity data was collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1895 frames was collected with a frame width of 0.5° covering up to θ = 28.29° with 99.9% completeness accomplished. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C6 | 0.77131 (13) | 0.70520 (9) | 0.3849 (2) | 0.0204 (3) | |
| C10 | 0.34827 (15) | 0.64314 (11) | 0.4195 (3) | 0.0336 (4) | |
| H10A | 0.2857 | 0.6104 | 0.4193 | 0.050* | 0.5 |
| H10B | 0.3246 | 0.6815 | 0.3361 | 0.050* | 0.5 |
| H10C | 0.3713 | 0.6629 | 0.5373 | 0.050* | 0.5 |
| H10D | 0.3688 | 0.6927 | 0.4424 | 0.050* | 0.5 |
| H10E | 0.3298 | 0.6217 | 0.5257 | 0.050* | 0.5 |
| H10F | 0.2831 | 0.6403 | 0.3245 | 0.050* | 0.5 |
| C11 | 0.33503 (15) | 0.48994 (11) | 0.3373 (3) | 0.0313 (4) | |
| H11A | 0.3459 | 0.4411 | 0.3025 | 0.047* | 0.5 |
| H11B | 0.2703 | 0.5102 | 0.2592 | 0.047* | 0.5 |
| H11C | 0.3218 | 0.4908 | 0.4583 | 0.047* | 0.5 |
| H11D | 0.2794 | 0.5204 | 0.3775 | 0.047* | 0.5 |
| H11E | 0.355 | 0.4512 | 0.4208 | 0.047* | 0.5 |
| H11F | 0.3035 | 0.4706 | 0.2217 | 0.047* | 0.5 |
| C15 | 0.77150 (13) | 0.44582 (8) | 0.2917 (2) | 0.0202 (2) | |
| N2 | 0.73461 (11) | 0.64533 (7) | 0.2985 (2) | 0.0221 (3) | |
| N3 | 0.72056 (11) | 0.50299 (7) | 0.21172 (19) | 0.0190 (3) | |
| O1 | 0.72183 (10) | 0.73844 (7) | 0.48200 (17) | 0.0277 (3) | |
| O2 | 0.74071 (9) | 0.41395 (6) | 0.41242 (15) | 0.0202 (2) | |
| H2' | 0.7803 (17) | 0.6283 (10) | 0.237 (3) | 0.027 (5)* | |
| H3' | 0.7438 (16) | 0.5199 (10) | 0.122 (3) | 0.024 (5)* | |
| C1 | 1.03548 (14) | 0.71236 (10) | 0.2222 (2) | 0.0283 (4) | |
| H1 | 1.0731 | 0.6853 | 0.1474 | 0.034* | |
| C2 | 1.08852 (15) | 0.77174 (10) | 0.3009 (2) | 0.0293 (4) | |
| H2 | 1.1603 | 0.7852 | 0.2795 | 0.035* | |
| C3 | 1.03552 (16) | 0.81103 (10) | 0.4107 (2) | 0.0289 (4) | |
| H3 | 1.07 | 0.8521 | 0.4668 | 0.035* | |
| C4 | 0.93064 (15) | 0.78956 (9) | 0.4380 (2) | 0.0249 (4) | |
| H4 | 0.8918 | 0.8154 | 0.5134 | 0.03* | |
| C5 | 0.88403 (13) | 0.72965 (9) | 0.3529 (2) | 0.0197 (3) | |
| C7 | 0.63512 (12) | 0.60847 (8) | 0.3093 (2) | 0.0192 (3) | |
| C8 | 0.54288 (15) | 0.64111 (9) | 0.3586 (2) | 0.0241 (3) | |
| H8 | 0.5468 | 0.6899 | 0.3874 | 0.029* | |
| C9 | 0.44549 (13) | 0.60415 (9) | 0.3667 (2) | 0.0243 (4) | |
| C12 | 0.43827 (14) | 0.53253 (9) | 0.3249 (2) | 0.0235 (3) | |
| C13 | 0.53017 (14) | 0.50011 (9) | 0.2728 (2) | 0.0215 (3) | |
| H13 | 0.5258 | 0.4515 | 0.2421 | 0.026* | |
| C14 | 0.62761 (12) | 0.53699 (8) | 0.2646 (2) | 0.0189 (3) | |
| C16 | 0.87530 (13) | 0.42368 (9) | 0.2250 (2) | 0.0189 (3) | |
| C17 | 0.93911 (15) | 0.36937 (9) | 0.3085 (2) | 0.0255 (4) | |
| H17 | 0.9157 | 0.344 | 0.4012 | 0.031* | |
| C18 | 1.03894 (15) | 0.35268 (10) | 0.2530 (3) | 0.0295 (4) | |
| H18 | 1.0859 | 0.316 | 0.3079 | 0.035* | |
| C19 | 1.06792 (15) | 0.39063 (10) | 0.1168 (2) | 0.0283 (4) | |
| H19 | 1.1357 | 0.3806 | 0.0764 | 0.034* | |
| C20 | 0.99767 (15) | 0.44332 (10) | 0.0395 (3) | 0.0301 (4) | |
| H20 | 1.0181 | 0.4685 | −0.056 | 0.036* | |
| N1 | 0.93415 (12) | 0.69083 (8) | 0.2456 (2) | 0.0248 (3) | |
| N4 | 0.90251 (12) | 0.46069 (8) | 0.09200 (19) | 0.0245 (3) |
| C6 | 0.0205 (7) | 0.0210 (8) | 0.0200 (8) | 0.0032 (6) | 0.0050 (6) | 0.0032 (6) |
| C10 | 0.0211 (8) | 0.0387 (10) | 0.0437 (12) | 0.0041 (7) | 0.0132 (8) | −0.0001 (9) |
| C11 | 0.0227 (8) | 0.0378 (10) | 0.0351 (10) | −0.0060 (7) | 0.0102 (8) | −0.0020 (8) |
| C15 | 0.0209 (4) | 0.0201 (5) | 0.0205 (4) | −0.0022 (3) | 0.0064 (4) | −0.0014 (4) |
| N2 | 0.0184 (7) | 0.0206 (7) | 0.0304 (8) | 0.0008 (5) | 0.0124 (6) | −0.0027 (6) |
| N3 | 0.0181 (6) | 0.0214 (7) | 0.0192 (7) | −0.0007 (5) | 0.0081 (5) | 0.0004 (6) |
| O1 | 0.0252 (6) | 0.0322 (7) | 0.0283 (7) | 0.0007 (5) | 0.0117 (5) | −0.0061 (6) |
| O2 | 0.0209 (4) | 0.0201 (5) | 0.0205 (4) | −0.0022 (3) | 0.0064 (4) | −0.0014 (4) |
| C1 | 0.0238 (8) | 0.0362 (10) | 0.0265 (9) | −0.0018 (7) | 0.0088 (7) | −0.0063 (8) |
| C2 | 0.0253 (9) | 0.0384 (11) | 0.0253 (9) | −0.0092 (7) | 0.0078 (7) | 0.0008 (8) |
| C3 | 0.0343 (10) | 0.0279 (9) | 0.0243 (9) | −0.0102 (7) | 0.0043 (8) | −0.0031 (8) |
| C4 | 0.0291 (9) | 0.0253 (8) | 0.0215 (8) | −0.0022 (7) | 0.0079 (7) | −0.0008 (7) |
| C5 | 0.0196 (7) | 0.0191 (8) | 0.0213 (8) | 0.0005 (6) | 0.0061 (6) | 0.0034 (6) |
| C7 | 0.0168 (7) | 0.0215 (8) | 0.0202 (8) | −0.0008 (6) | 0.0060 (6) | 0.0027 (6) |
| C8 | 0.0212 (7) | 0.0253 (8) | 0.0268 (9) | 0.0037 (7) | 0.0072 (7) | 0.0020 (7) |
| C9 | 0.0196 (8) | 0.0314 (9) | 0.0232 (8) | 0.0047 (7) | 0.0070 (7) | 0.0027 (7) |
| C12 | 0.0174 (7) | 0.0329 (9) | 0.0205 (8) | −0.0024 (7) | 0.0041 (6) | 0.0035 (7) |
| C13 | 0.0217 (7) | 0.0238 (8) | 0.0196 (8) | −0.0022 (6) | 0.0055 (6) | −0.0005 (6) |
| C14 | 0.0173 (7) | 0.0240 (8) | 0.0158 (8) | 0.0020 (6) | 0.0044 (6) | 0.0014 (6) |
| C16 | 0.0188 (7) | 0.0188 (7) | 0.0190 (7) | −0.0015 (6) | 0.0035 (6) | −0.0040 (6) |
| C17 | 0.0262 (8) | 0.0248 (8) | 0.0274 (9) | 0.0022 (7) | 0.0097 (7) | 0.0020 (7) |
| C18 | 0.0271 (9) | 0.0278 (9) | 0.0346 (10) | 0.0079 (7) | 0.0079 (8) | 0.0012 (8) |
| C19 | 0.0210 (8) | 0.0356 (10) | 0.0302 (9) | 0.0049 (7) | 0.0096 (7) | −0.0046 (8) |
| C20 | 0.0274 (9) | 0.0375 (10) | 0.0282 (9) | 0.0030 (7) | 0.0128 (8) | 0.0046 (8) |
| N1 | 0.0218 (7) | 0.0269 (7) | 0.0275 (8) | −0.0029 (6) | 0.0089 (6) | −0.0051 (6) |
| N4 | 0.0231 (7) | 0.0290 (8) | 0.0227 (7) | 0.0031 (6) | 0.0080 (6) | 0.0027 (6) |
| C6—O1 | 1.219 (2) | C1—H1 | 0.95 |
| C6—N2 | 1.351 (2) | C2—C3 | 1.375 (3) |
| C6—C5 | 1.506 (2) | C2—H2 | 0.95 |
| C10—C9 | 1.509 (2) | C3—C4 | 1.388 (2) |
| C10—H10A | 0.98 | C3—H3 | 0.95 |
| C10—H10B | 0.98 | C4—C5 | 1.381 (2) |
| C10—H10C | 0.98 | C4—H4 | 0.95 |
| C10—H10D | 0.98 | C5—N1 | 1.336 (2) |
| C10—H10E | 0.98 | C7—C8 | 1.391 (2) |
| C10—H10F | 0.98 | C7—C14 | 1.397 (2) |
| C11—C12 | 1.507 (2) | C8—C9 | 1.384 (2) |
| C11—H11A | 0.98 | C8—H8 | 0.95 |
| C11—H11B | 0.98 | C9—C12 | 1.394 (2) |
| C11—H11C | 0.98 | C12—C13 | 1.395 (2) |
| C11—H11D | 0.98 | C13—C14 | 1.384 (2) |
| C11—H11E | 0.98 | C13—H13 | 0.95 |
| C11—H11F | 0.98 | C16—N4 | 1.336 (2) |
| C15—O2 | 1.2274 (19) | C16—C17 | 1.377 (2) |
| C15—N3 | 1.342 (2) | C17—C18 | 1.392 (2) |
| C15—C16 | 1.505 (2) | C17—H17 | 0.95 |
| N2—C7 | 1.410 (2) | C18—C19 | 1.374 (3) |
| N2—H2' | 0.86 (2) | C18—H18 | 0.95 |
| N3—C14 | 1.421 (2) | C19—C20 | 1.378 (3) |
| N3—H3' | 0.86 (2) | C19—H19 | 0.95 |
| C1—N1 | 1.338 (2) | C20—N4 | 1.333 (2) |
| C1—C2 | 1.382 (3) | C20—H20 | 0.95 |
| O1—C6—N2 | 125.78 (16) | C15—N3—H3' | 119.0 (13) |
| O1—C6—C5 | 120.35 (15) | C14—N3—H3' | 117.3 (13) |
| N2—C6—C5 | 113.87 (14) | N1—C1—C2 | 123.65 (17) |
| C9—C10—H10A | 109.5 | N1—C1—H1 | 118.2 |
| C9—C10—H10B | 109.5 | C2—C1—H1 | 118.2 |
| H10A—C10—H10B | 109.5 | C3—C2—C1 | 118.80 (16) |
| C9—C10—H10C | 109.5 | C3—C2—H2 | 120.6 |
| H10A—C10—H10C | 109.5 | C1—C2—H2 | 120.6 |
| H10B—C10—H10C | 109.5 | C2—C3—C4 | 118.66 (16) |
| C9—C10—H10D | 109.5 | C2—C3—H3 | 120.7 |
| H10A—C10—H10D | 141.1 | C4—C3—H3 | 120.7 |
| H10B—C10—H10D | 56.3 | C5—C4—C3 | 118.40 (16) |
| H10C—C10—H10D | 56.3 | C5—C4—H4 | 120.8 |
| C9—C10—H10E | 109.5 | C3—C4—H4 | 120.8 |
| H10A—C10—H10E | 56.3 | N1—C5—C4 | 123.82 (14) |
| H10B—C10—H10E | 141.1 | N1—C5—C6 | 117.49 (14) |
| H10C—C10—H10E | 56.3 | C4—C5—C6 | 118.67 (15) |
| H10D—C10—H10E | 109.5 | C8—C7—C14 | 118.66 (14) |
| C9—C10—H10F | 109.5 | C8—C7—N2 | 122.39 (15) |
| H10A—C10—H10F | 56.3 | C14—C7—N2 | 118.93 (14) |
| H10B—C10—H10F | 56.3 | C9—C8—C7 | 121.53 (15) |
| H10C—C10—H10F | 141.1 | C9—C8—H8 | 119.2 |
| H10D—C10—H10F | 109.5 | C7—C8—H8 | 119.2 |
| H10E—C10—H10F | 109.5 | C8—C9—C12 | 120.01 (15) |
| C12—C11—H11A | 109.5 | C8—C9—C10 | 118.66 (16) |
| C12—C11—H11B | 109.5 | C12—C9—C10 | 121.33 (16) |
| H11A—C11—H11B | 109.5 | C9—C12—C13 | 118.41 (15) |
| C12—C11—H11C | 109.5 | C9—C12—C11 | 121.62 (16) |
| H11A—C11—H11C | 109.5 | C13—C12—C11 | 119.96 (16) |
| H11B—C11—H11C | 109.5 | C14—C13—C12 | 121.65 (15) |
| C12—C11—H11D | 109.5 | C14—C13—H13 | 119.2 |
| H11A—C11—H11D | 141.1 | C12—C13—H13 | 119.2 |
| H11B—C11—H11D | 56.3 | C13—C14—C7 | 119.73 (14) |
| H11C—C11—H11D | 56.3 | C13—C14—N3 | 120.85 (14) |
| C12—C11—H11E | 109.5 | C7—C14—N3 | 119.42 (13) |
| H11A—C11—H11E | 56.3 | N4—C16—C17 | 123.97 (15) |
| H11B—C11—H11E | 141.1 | N4—C16—C15 | 117.22 (14) |
| H11C—C11—H11E | 56.3 | C17—C16—C15 | 118.74 (14) |
| H11D—C11—H11E | 109.5 | C16—C17—C18 | 118.08 (16) |
| C12—C11—H11F | 109.5 | C16—C17—H17 | 121 |
| H11A—C11—H11F | 56.3 | C18—C17—H17 | 121 |
| H11B—C11—H11F | 56.3 | C19—C18—C17 | 118.40 (17) |
| H11C—C11—H11F | 141.1 | C19—C18—H18 | 120.8 |
| H11D—C11—H11F | 109.5 | C17—C18—H18 | 120.8 |
| H11E—C11—H11F | 109.5 | C18—C19—C20 | 119.32 (16) |
| O2—C15—N3 | 124.85 (15) | C18—C19—H19 | 120.3 |
| O2—C15—C16 | 120.91 (14) | C20—C19—H19 | 120.3 |
| N3—C15—C16 | 114.22 (14) | N4—C20—C19 | 123.20 (17) |
| C6—N2—C7 | 126.56 (14) | N4—C20—H20 | 118.4 |
| C6—N2—H2' | 113.8 (13) | C19—C20—H20 | 118.4 |
| C7—N2—H2' | 119.5 (13) | C5—N1—C1 | 116.67 (14) |
| C15—N3—C14 | 123.74 (14) | C20—N4—C16 | 117.01 (15) |
| H··· | ||||
| N2—H2′···N1 | 0.86 (2) | 2.20 (2) | 2.6698 (19) | 114.2 (16) |
| N2—H2′···N3 | 0.86 (2) | 2.48 (2) | 2.777 (2) | 101.2 (15) |
| N2—H2′···O2i | 0.86 (2) | 2.60 (2) | 3.2112 (19) | 129.0 (17) |
| N3—H3′···O2i | 0.86 (2) | 2.05 (2) | 2.8508 (19) | 155.5 (18) |
| N3—H3′···N4 | 0.86 (2) | 2.28 (2) | 2.6670 (19) | 107.8 (15) |
| C8—H8···O1 | 0.95 | 2.31 | 2.877 (2) | 118 |
| C2—H2···O1ii | 0.95 | 2.59 | 3.195 (2) | 122 |
| C3—H3···O2iii | 0.95 | 2.48 | 3.160 (2) | 128 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2′⋯N1 | 0.86 (2) | 2.20 (2) | 2.6698 (19) | 114.2 (16) |
| N2—H2′⋯N3 | 0.86 (2) | 2.48 (2) | 2.777 (2) | 101.2 (15) |
| N2—H2′⋯O2i | 0.86 (2) | 2.60 (2) | 3.2112 (19) | 129.0 (17) |
| N3—H3′⋯O2i | 0.86 (2) | 2.05 (2) | 2.8508 (19) | 155.5 (18) |
| N3—H3′⋯N4 | 0.86 (2) | 2.28 (2) | 2.6670 (19) | 107.8 (15) |
Symmetry code: (i) .