Literature DB >> 22220099

A third polymorph of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine.

Barbara Wicher1, Maria Gdaniec.   

Abstract

A third polymorph of the title compound, C(16)H(14)N(4), has been obtained. The mol-ecule adopts a non-planar conformation with an E configuration at the two partially double exo C N bonds of the 2-pyridyl-amine units. Like in the triclinic form [Bensemann et al. (2002 ▶). New J. Chem.26, 448-456], the recognition process between 2-pyridyl-amine units takes place through formation of a cyclic R(2) (2)(8) hydrogen-bond motif, leading to the creation of tapes parallel to [001].

Entities:  

Year:  2011        PMID: 22220099      PMCID: PMC3247481          DOI: 10.1107/S1600536811044539

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of the ortho­rhom­bic and triclinic polymorphs of N,N′-di(pyridin-2-yl)benzene-1,4-diamine, see: Bensemann et al. (2002 ▶).

Experimental

Crystal data

C16H14N4 M = 262.31 Monoclinic, a = 7.2534 (2) Å b = 20.8270 (6) Å c = 9.0681 (3) Å β = 106.746 (4)° V = 1311.79 (7) Å3 Z = 4 Cu Kα radiation μ = 0.65 mm−1 T = 295 K 0.2 × 0.2 × 0.05 mm

Data collection

Oxford Diffraction SuperNova diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.799, T max = 1.000 10413 measured reflections 2398 independent reflections 2221 reflections with I > 2/s(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.094 S = 1.07 2398 reflections 181 parameters H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044539/rz2657sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044539/rz2657Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044539/rz2657Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N4F(000) = 552
Mr = 262.31Dx = 1.328 Mg m3
Monoclinic, P21/cMelting point: 479 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54178 Å
a = 7.2534 (2) ÅCell parameters from 6262 reflections
b = 20.8270 (6) Åθ = 2.1–75.8°
c = 9.0681 (3) ŵ = 0.65 mm1
β = 106.746 (4)°T = 295 K
V = 1311.79 (7) Å3Plate, colourless
Z = 40.2 × 0.2 × 0.05 mm
Oxford Diffraction SuperNova diffractometer2398 independent reflections
Radiation source: Nova Cu X-ray Source2221 reflections with I > 2/s(I)
mirrorRint = 0.019
ω scansθmax = 68.2°, θmin = 6.4°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)h = −8→8
Tmin = 0.799, Tmax = 1.000k = −25→25
10413 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0478P)2 + 0.2155P] where P = (Fo2 + 2Fc2)/3
2398 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.11 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.18091 (14)0.15267 (5)0.53715 (10)0.0434 (2)
N70.34929 (14)0.13813 (5)0.36249 (10)0.0453 (2)
H7N0.42660.11420.43800.054*
N140.53458 (15)0.12536 (5)−0.19925 (11)0.0521 (3)
H14N0.43140.1319−0.28110.063*
N160.63876 (14)0.06275 (5)−0.36845 (10)0.0458 (2)
C10.18087 (15)0.15794 (5)0.38962 (12)0.0382 (2)
C30.02222 (18)0.17053 (6)0.57328 (14)0.0500 (3)
H30.02160.16630.67520.060*
C4−0.13952 (18)0.19473 (7)0.46964 (16)0.0572 (3)
H4−0.24620.20710.50000.069*
C5−0.13771 (18)0.19995 (7)0.31846 (16)0.0581 (3)
H5−0.24490.21610.24480.070*
C60.02097 (17)0.18144 (6)0.27640 (13)0.0486 (3)
H60.02240.18440.17440.058*
C80.39192 (15)0.13618 (5)0.22059 (12)0.0387 (3)
C90.34861 (17)0.18587 (5)0.11355 (13)0.0435 (3)
H90.28420.22200.13320.052*
C100.40017 (17)0.18215 (6)−0.02162 (12)0.0445 (3)
H100.36850.2157−0.09200.053*
C110.49825 (15)0.12933 (5)−0.05437 (12)0.0406 (3)
C120.54745 (16)0.08080 (5)0.05517 (13)0.0425 (3)
H120.61770.04570.03800.051*
C130.49368 (16)0.08396 (5)0.18909 (13)0.0419 (3)
H130.52620.05050.25970.050*
C150.67958 (16)0.08914 (5)−0.22815 (12)0.0418 (3)
C170.7754 (2)0.02598 (6)−0.39897 (15)0.0539 (3)
H170.74770.0068−0.49550.065*
C180.9526 (2)0.01483 (7)−0.29741 (16)0.0603 (4)
H181.0408−0.0122−0.32280.072*
C190.99619 (18)0.04509 (7)−0.15578 (15)0.0574 (3)
H191.11730.0402−0.08550.069*
C200.85928 (17)0.08235 (7)−0.11991 (14)0.0506 (3)
H200.88580.1028−0.02490.061*
U11U22U33U12U13U23
N20.0485 (5)0.0489 (5)0.0360 (5)0.0011 (4)0.0174 (4)0.0017 (4)
N70.0482 (5)0.0582 (6)0.0316 (5)0.0106 (4)0.0148 (4)0.0050 (4)
N140.0529 (6)0.0744 (7)0.0294 (5)0.0220 (5)0.0123 (4)0.0021 (4)
N160.0504 (6)0.0555 (6)0.0349 (5)0.0066 (4)0.0177 (4)0.0011 (4)
C10.0431 (6)0.0385 (5)0.0343 (5)−0.0050 (4)0.0132 (4)−0.0027 (4)
C30.0539 (7)0.0573 (7)0.0456 (6)−0.0034 (5)0.0253 (5)−0.0006 (5)
C40.0427 (6)0.0708 (9)0.0636 (8)−0.0016 (6)0.0242 (6)−0.0007 (6)
C50.0386 (6)0.0760 (9)0.0563 (8)−0.0020 (6)0.0081 (5)0.0052 (6)
C60.0438 (6)0.0638 (7)0.0365 (6)−0.0053 (5)0.0090 (5)−0.0002 (5)
C80.0403 (6)0.0454 (6)0.0313 (5)0.0006 (4)0.0117 (4)−0.0013 (4)
C90.0497 (6)0.0445 (6)0.0392 (6)0.0108 (5)0.0174 (5)0.0014 (5)
C100.0505 (6)0.0488 (6)0.0352 (6)0.0122 (5)0.0139 (5)0.0080 (5)
C110.0409 (6)0.0511 (6)0.0302 (5)0.0054 (5)0.0108 (4)−0.0014 (4)
C120.0465 (6)0.0415 (6)0.0411 (6)0.0078 (5)0.0150 (5)−0.0023 (4)
C130.0474 (6)0.0413 (6)0.0377 (6)0.0046 (5)0.0134 (5)0.0051 (4)
C150.0471 (6)0.0488 (6)0.0335 (5)0.0057 (5)0.0178 (5)0.0048 (4)
C170.0630 (8)0.0606 (7)0.0455 (7)0.0103 (6)0.0273 (6)−0.0004 (5)
C180.0604 (8)0.0689 (8)0.0618 (8)0.0204 (6)0.0337 (7)0.0123 (7)
C190.0445 (7)0.0763 (9)0.0538 (7)0.0105 (6)0.0180 (6)0.0175 (6)
C200.0489 (7)0.0660 (8)0.0373 (6)0.0036 (5)0.0131 (5)0.0023 (5)
N2—C31.3372 (15)C8—C131.3895 (15)
N2—C11.3422 (13)C8—C91.3916 (15)
N7—C11.3771 (14)C9—C101.3829 (15)
N7—C81.4079 (13)C9—H90.9300
N7—H7N0.9001C10—C111.3879 (16)
N14—C151.3793 (14)C10—H100.9300
N14—C111.4148 (14)C11—C121.3898 (16)
N14—H14N0.9000C12—C131.3799 (15)
N16—C151.3385 (14)C12—H120.9300
N16—C171.3427 (15)C13—H130.9300
C1—C61.3974 (16)C15—C201.3947 (16)
C3—C41.3706 (19)C17—C181.3682 (19)
C3—H30.9300C17—H170.9300
C4—C51.3790 (18)C18—C191.383 (2)
C4—H40.9300C18—H180.9300
C5—C61.3681 (18)C19—C201.3713 (18)
C5—H50.9300C19—H190.9300
C6—H60.9300C20—H200.9300
C3—N2—C1117.93 (10)C8—C9—H9119.6
C1—N7—C8127.71 (9)C9—C10—C11121.35 (10)
C1—N7—H7N114.8C9—C10—H10119.3
C8—N7—H7N115.3C11—C10—H10119.3
C15—N14—C11124.37 (9)C10—C11—C12117.74 (10)
C15—N14—H14N115.1C10—C11—N14119.28 (10)
C11—N14—H14N115.1C12—C11—N14122.89 (10)
C15—N16—C17117.13 (10)C13—C12—C11120.99 (10)
N2—C1—N7114.09 (10)C13—C12—H12119.5
N2—C1—C6121.52 (10)C11—C12—H12119.5
N7—C1—C6124.39 (10)C12—C13—C8121.32 (10)
N2—C3—C4124.16 (11)C12—C13—H13119.3
N2—C3—H3117.9C8—C13—H13119.3
C4—C3—H3117.9N16—C15—N14115.68 (10)
C3—C4—C5117.34 (12)N16—C15—C20122.22 (10)
C3—C4—H4121.3N14—C15—C20122.07 (10)
C5—C4—H4121.3N16—C17—C18124.33 (12)
C6—C5—C4120.31 (12)N16—C17—H17117.8
C6—C5—H5119.8C18—C17—H17117.8
C4—C5—H5119.8C17—C18—C19117.84 (12)
C5—C6—C1118.73 (11)C17—C18—H18121.1
C5—C6—H6120.6C19—C18—H18121.1
C1—C6—H6120.6C20—C19—C18119.38 (12)
C13—C8—C9117.73 (10)C20—C19—H19120.3
C13—C8—N7118.69 (10)C18—C19—H19120.3
C9—C8—N7123.44 (10)C19—C20—C15118.97 (12)
C10—C9—C8120.81 (10)C19—C20—H20120.5
C10—C9—H9119.6C15—C20—H20120.5
C3—N2—C1—N7−179.60 (10)C15—N14—C11—C10157.24 (12)
C3—N2—C1—C60.15 (16)C15—N14—C11—C12−26.30 (18)
C8—N7—C1—N2178.25 (10)C10—C11—C12—C132.54 (17)
C8—N7—C1—C6−1.49 (19)N14—C11—C12—C13−173.97 (11)
C1—N2—C3—C4−0.97 (18)C11—C12—C13—C8−1.25 (17)
N2—C3—C4—C50.9 (2)C9—C8—C13—C12−1.05 (17)
C3—C4—C5—C6−0.1 (2)N7—C8—C13—C12−176.94 (10)
C4—C5—C6—C1−0.7 (2)C17—N16—C15—N14−178.51 (11)
N2—C1—C6—C50.65 (18)C17—N16—C15—C203.62 (18)
N7—C1—C6—C5−179.63 (12)C11—N14—C15—N16145.45 (11)
C1—N7—C8—C13−139.63 (12)C11—N14—C15—C20−36.68 (18)
C1—N7—C8—C944.73 (17)C15—N16—C17—C18−1.0 (2)
C13—C8—C9—C102.02 (17)N16—C17—C18—C19−2.2 (2)
N7—C8—C9—C10177.69 (11)C17—C18—C19—C202.9 (2)
C8—C9—C10—C11−0.71 (18)C18—C19—C20—C15−0.5 (2)
C9—C10—C11—C12−1.57 (18)N16—C15—C20—C19−2.90 (19)
C9—C10—C11—N14175.07 (11)N14—C15—C20—C19179.36 (12)
D—H···AD—HH···AD···AD—H···A
N7—H7N···N16i0.902.253.1423 (13)175
N14—H14N···N2ii0.902.123.0141 (14)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N7—H7N⋯N16i0.902.253.1423 (13)175
N14—H14N⋯N2ii0.902.123.0141 (14)175

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09

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