Literature DB >> 22199802

N,N'-Bis(pyridin-2-yl)benzene-1,4-diamine-naphthalene (2/1).

Barbara Wicher1, Maria Gdaniec.   

Abstract

The asymmetric unit of the title compound, C(10)H(8)·2C(16)H(14)N(4), consists of one mol-ecule of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine (PDAB) and one half of the centrosymmetric naphthalene mol-ecule. The PDAB mol-ecule adopts a non-planar conformation with an E configuration at the two partially double exo C N bonds of the 2-pyridyl-amine units. In the crystal, N-H⋯N hydrogen bonds between the PDAB mol-ecules generate a cyclic R(2) (2)(8) motif, leading to the formation of PDAB tapes extending along [100]. The tapes are arranged into (010) layers and the naphthalene mol-ecules are enclosed in cavities formed between the PDAB layers.

Entities:  

Year:  2011        PMID: 22199802      PMCID: PMC3238953          DOI: 10.1107/S1600536811047519

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of polymorphic forms of N,N′-di(pyridin-2-yl)benzene-1,4-diamine, see: Bensemann et al. (2002 ▶); Wicher & Gdaniec (2011a ▶). For the structures of N,N′-di(pyridin-2-yl)benzene-1,4-diamine co-crystals with phenazine and quin­oxaline, see: Gdaniec et al. (2005 ▶); Wicher & Gdaniec (2011b ▶).

Experimental

Crystal data

C10H8·2C16H14N4 M = 652.78 Monoclinic, a = 9.2224 (1) Å b = 22.8371 (2) Å c = 8.8760 (1) Å β = 117.936 (2)° V = 1651.56 (3) Å3 Z = 2 Cu Kα radiation μ = 0.63 mm−1 T = 130 K 0.20 × 0.15 × 0.05 mm

Data collection

Oxford Diffraction SuperNova diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.931, T max = 1.000 9878 measured reflections 3020 independent reflections 2671 reflections with I > 2/s(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.091 S = 1.05 3020 reflections 226 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811047519/rz2666sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047519/rz2666Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047519/rz2666Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8·2C16H14N4F(000) = 688
Mr = 652.78Dx = 1.313 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 7079 reflections
a = 9.2224 (1) Åθ = 3.9–75.7°
b = 22.8371 (2) ŵ = 0.63 mm1
c = 8.8760 (1) ÅT = 130 K
β = 117.936 (2)°Plate, colourless
V = 1651.56 (3) Å30.20 × 0.15 × 0.05 mm
Z = 2
Oxford Diffraction SuperNova diffractometer3020 independent reflections
Radiation source: Nova Cu X-ray Source2671 reflections with I > 2/s(I)
mirrorRint = 0.019
ω scansθmax = 68.2°, θmin = 6.7°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)h = −11→8
Tmin = 0.931, Tmax = 1.000k = −27→20
9878 measured reflectionsl = −9→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0529P)2 + 0.2963P] where P = (Fo2 + 2Fc2)/3
3020 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.87262 (11)0.11061 (4)0.09736 (12)0.0241 (2)
N70.66539 (11)0.16648 (4)0.09585 (12)0.0245 (2)
H7N0.73170.19690.10690.029*
N140.06413 (11)0.21713 (4)0.08789 (13)0.0261 (2)
H14N0.00150.18620.08290.031*
N16−0.13109 (11)0.27154 (4)0.11442 (12)0.0244 (2)
C10.73812 (12)0.11242 (5)0.11994 (13)0.0210 (2)
C30.95160 (13)0.05927 (5)0.12410 (15)0.0280 (3)
H31.04600.05780.10730.034*
C40.90549 (14)0.00852 (5)0.17415 (16)0.0298 (3)
H40.9659−0.02670.19160.036*
C50.76666 (14)0.01096 (5)0.19811 (14)0.0266 (2)
H50.7314−0.02290.23410.032*
C60.68089 (13)0.06259 (5)0.16949 (14)0.0234 (2)
H60.58470.06460.18290.028*
C80.51516 (13)0.17821 (4)0.09628 (13)0.0207 (2)
C90.37373 (13)0.14622 (4)−0.00512 (13)0.0213 (2)
H90.37910.1146−0.07190.026*
C100.22525 (13)0.16003 (4)−0.00954 (13)0.0209 (2)
H100.13010.1378−0.07950.025*
C110.21415 (13)0.20611 (4)0.08742 (13)0.0212 (2)
C120.35601 (13)0.23827 (5)0.18907 (14)0.0237 (2)
H120.35070.26980.25610.028*
C130.50413 (13)0.22456 (5)0.19288 (13)0.0225 (2)
H130.59920.24700.26200.027*
C15−0.00317 (13)0.27123 (5)0.08107 (13)0.0218 (2)
C17−0.20195 (13)0.32340 (5)0.10952 (15)0.0273 (3)
H17−0.29230.32380.13330.033*
C18−0.15272 (14)0.37602 (5)0.07244 (15)0.0271 (2)
H18−0.20510.41170.07360.032*
C19−0.02310 (14)0.37485 (5)0.03317 (14)0.0260 (2)
H190.01300.41000.00410.031*
C200.05239 (13)0.32251 (5)0.03668 (14)0.0247 (2)
H200.14050.32100.00960.030*
C210.49781 (18)0.09257 (6)0.65351 (19)0.0418 (3)
H210.51130.12190.73480.050*
C220.41095 (17)0.10534 (6)0.4784 (2)0.0407 (3)
H220.36590.14330.44180.049*
C230.39118 (14)0.06342 (6)0.36099 (16)0.0338 (3)
H230.33270.07260.24300.041*
C240.45620 (13)0.00641 (5)0.41152 (14)0.0260 (2)
C250.43734 (15)−0.03839 (6)0.29296 (16)0.0347 (3)
H250.3784−0.03040.17420.042*
U11U22U33U12U13U23
N20.0202 (4)0.0227 (5)0.0307 (5)−0.0003 (3)0.0131 (4)−0.0019 (4)
N70.0202 (4)0.0190 (4)0.0381 (5)−0.0005 (3)0.0169 (4)0.0010 (4)
N140.0216 (5)0.0195 (4)0.0415 (6)−0.0003 (3)0.0184 (4)−0.0002 (4)
N160.0201 (4)0.0214 (5)0.0329 (5)0.0005 (3)0.0135 (4)−0.0004 (4)
C10.0183 (5)0.0210 (5)0.0223 (5)−0.0006 (4)0.0084 (4)−0.0027 (4)
C30.0220 (5)0.0275 (6)0.0365 (6)0.0019 (4)0.0154 (5)−0.0039 (5)
C40.0278 (6)0.0227 (6)0.0369 (6)0.0056 (4)0.0135 (5)−0.0008 (5)
C50.0275 (6)0.0209 (5)0.0287 (6)−0.0019 (4)0.0110 (5)0.0001 (4)
C60.0208 (5)0.0238 (5)0.0266 (5)−0.0013 (4)0.0118 (4)−0.0010 (4)
C80.0188 (5)0.0189 (5)0.0249 (5)0.0023 (4)0.0108 (4)0.0042 (4)
C90.0236 (5)0.0183 (5)0.0236 (5)0.0005 (4)0.0123 (4)−0.0003 (4)
C100.0191 (5)0.0193 (5)0.0227 (5)−0.0016 (4)0.0085 (4)0.0015 (4)
C110.0197 (5)0.0192 (5)0.0258 (5)0.0024 (4)0.0115 (4)0.0034 (4)
C120.0239 (5)0.0211 (5)0.0269 (5)0.0013 (4)0.0124 (4)−0.0028 (4)
C130.0192 (5)0.0209 (5)0.0247 (5)−0.0020 (4)0.0081 (4)−0.0011 (4)
C150.0177 (5)0.0221 (5)0.0236 (5)0.0003 (4)0.0078 (4)−0.0012 (4)
C170.0216 (5)0.0258 (6)0.0364 (6)0.0022 (4)0.0151 (5)−0.0016 (5)
C180.0248 (5)0.0212 (5)0.0313 (6)0.0047 (4)0.0098 (5)−0.0005 (4)
C190.0250 (5)0.0224 (5)0.0255 (5)−0.0019 (4)0.0077 (4)0.0019 (4)
C200.0213 (5)0.0261 (5)0.0276 (5)−0.0002 (4)0.0122 (4)0.0015 (4)
C210.0534 (8)0.0369 (7)0.0546 (8)−0.0155 (6)0.0416 (7)−0.0104 (6)
C220.0383 (7)0.0321 (6)0.0674 (9)0.0032 (5)0.0378 (7)0.0111 (6)
C230.0219 (5)0.0436 (7)0.0356 (6)0.0009 (5)0.0132 (5)0.0154 (5)
C240.0186 (5)0.0352 (6)0.0250 (6)−0.0054 (4)0.0108 (4)0.0041 (4)
C250.0350 (6)0.0458 (7)0.0272 (6)−0.0154 (5)0.0178 (5)−0.0032 (5)
N2—C31.3415 (14)C11—C121.3996 (15)
N2—C11.3466 (14)C12—C131.3864 (15)
N7—C11.3732 (13)C12—H120.9500
N7—C81.4129 (13)C13—H130.9500
N7—H7N0.9001C15—C201.4066 (15)
N14—C151.3711 (14)C20—C191.3763 (16)
N14—C111.4081 (13)C20—H200.9500
N14—H14N0.8999C19—C181.3934 (16)
N16—C171.3436 (14)C19—H190.9500
N16—C151.3441 (14)C18—C171.3778 (16)
C1—C61.4087 (15)C18—H180.9500
C3—C41.3778 (17)C17—H170.9500
C3—H30.9500C21—C25i1.359 (2)
C4—C51.3938 (16)C21—C221.405 (2)
C4—H40.9500C21—H210.9500
C5—C61.3756 (15)C22—C231.363 (2)
C5—H50.9500C22—H220.9500
C6—H60.9500C23—C241.4155 (18)
C8—C91.3947 (15)C23—H230.9500
C8—C131.3955 (15)C24—C251.4188 (18)
C9—C101.3877 (15)C24—C24i1.420 (2)
C9—H90.9500C25—C21i1.359 (2)
C10—C111.3934 (15)C25—H250.9500
C10—H100.9500
C3—N2—C1117.53 (9)C13—C12—H12119.7
C1—N7—C8125.32 (9)C11—C12—H12119.7
C1—N7—H7N114.8C12—C13—C8120.73 (10)
C8—N7—H7N118.1C12—C13—H13119.6
C15—N14—C11125.87 (9)C8—C13—H13119.6
C15—N14—H14N116.0N16—C15—N14114.89 (9)
C11—N14—H14N117.9N16—C15—C20121.99 (10)
C17—N16—C15117.47 (9)N14—C15—C20123.08 (10)
N2—C1—N7114.91 (9)C19—C20—C15118.86 (10)
N2—C1—C6121.85 (9)C19—C20—H20120.6
N7—C1—C6123.22 (9)C15—C20—H20120.6
N2—C3—C4124.62 (10)C20—C19—C18119.67 (10)
N2—C3—H3117.7C20—C19—H19120.2
C4—C3—H3117.7C18—C19—H19120.2
C3—C4—C5117.38 (10)C17—C18—C19117.42 (10)
C3—C4—H4121.3C17—C18—H18121.3
C5—C4—H4121.3C19—C18—H18121.3
C6—C5—C4119.73 (10)N16—C17—C18124.53 (10)
C6—C5—H5120.1N16—C17—H17117.7
C4—C5—H5120.1C18—C17—H17117.7
C5—C6—C1118.88 (10)C25i—C21—C22120.32 (13)
C5—C6—H6120.6C25i—C21—H21119.8
C1—C6—H6120.6C22—C21—H21119.8
C9—C8—C13118.59 (9)C23—C22—C21120.17 (12)
C9—C8—N7121.38 (9)C23—C22—H22119.9
C13—C8—N7119.95 (9)C21—C22—H22119.9
C10—C9—C8120.75 (10)C22—C23—C24121.24 (12)
C10—C9—H9119.6C22—C23—H23119.4
C8—C9—H9119.6C24—C23—H23119.4
C9—C10—C11120.75 (10)C23—C24—C25122.80 (11)
C9—C10—H10119.6C23—C24—C24i118.50 (14)
C11—C10—H10119.6C25—C24—C24i118.70 (14)
C10—C11—C12118.52 (9)C21i—C25—C24121.07 (12)
C10—C11—N14119.57 (9)C21i—C25—H25119.5
C12—C11—N14121.83 (10)C24—C25—H25119.5
C13—C12—C11120.67 (10)
C3—N2—C1—N7178.10 (10)N14—C11—C12—C13176.65 (10)
C3—N2—C1—C6−0.10 (15)C11—C12—C13—C8−0.39 (16)
C8—N7—C1—N2173.65 (10)C9—C8—C13—C120.44 (16)
C8—N7—C1—C6−8.18 (17)N7—C8—C13—C12177.21 (10)
C1—N2—C3—C4−0.51 (17)C17—N16—C15—N14−179.99 (10)
N2—C3—C4—C50.15 (18)C17—N16—C15—C20−2.18 (16)
C3—C4—C5—C60.83 (17)C11—N14—C15—N16−168.34 (10)
C4—C5—C6—C1−1.40 (16)C11—N14—C15—C2013.88 (17)
N2—C1—C6—C51.05 (16)N16—C15—C20—C192.30 (16)
N7—C1—C6—C5−176.99 (10)N14—C15—C20—C19179.93 (10)
C1—N7—C8—C9−51.81 (15)C15—C20—C19—C18−0.34 (16)
C1—N7—C8—C13131.51 (11)C20—C19—C18—C17−1.53 (16)
C13—C8—C9—C10−0.20 (15)C15—N16—C17—C180.14 (17)
N7—C8—C9—C10−176.92 (9)C19—C18—C17—N161.71 (18)
C8—C9—C10—C11−0.10 (16)C25i—C21—C22—C23−0.01 (19)
C9—C10—C11—C120.16 (15)C21—C22—C23—C240.29 (18)
C9—C10—C11—N14−176.49 (9)C22—C23—C24—C25179.68 (11)
C15—N14—C11—C10−138.39 (11)C22—C23—C24—C24i−0.23 (19)
C15—N14—C11—C1245.08 (16)C23—C24—C25—C21i179.73 (11)
C10—C11—C12—C130.08 (16)C24i—C24—C25—C21i−0.36 (19)
D—H···AD—HH···AD···AD—H···A
N7—H7N···N16ii0.902.113.0027 (13)175
N14—H14N···N2iii0.902.133.0305 (13)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N7—H7N⋯N16i0.902.113.0027 (13)175
N14—H14N⋯N2ii0.902.133.0305 (13)174

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A third polymorph of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine.

Authors:  Barbara Wicher; Maria Gdaniec
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

3.  N,N'-Bis(pyridin-2-yl)benzene-1,4-diamine-quinoxaline (2/1).

Authors:  Barbara Wicher; Maria Gdaniec
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09
  3 in total

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