| Literature DB >> 22199802 |
Barbara Wicher1, Maria Gdaniec.
Abstract
The asymmetric unit of the title compound, C(10)H(8)·2C(16)H(14)N(4), consists of one mol-ecule of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine (PDAB) and one half of the centrosymmetric naphthalene mol-ecule. The PDAB mol-ecule adopts a non-planar conformation with an E configuration at the two partially double exo C N bonds of the 2-pyridyl-amine units. In the crystal, N-H⋯N hydrogen bonds between the PDAB mol-ecules generate a cyclic R(2) (2)(8) motif, leading to the formation of PDAB tapes extending along [100]. The tapes are arranged into (010) layers and the naphthalene mol-ecules are enclosed in cavities formed between the PDAB layers.Entities:
Year: 2011 PMID: 22199802 PMCID: PMC3238953 DOI: 10.1107/S1600536811047519
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H8·2C16H14N4 | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 7079 reflections |
| θ = 3.9–75.7° | |
| µ = 0.63 mm−1 | |
| β = 117.936 (2)° | Plate, colourless |
| 0.20 × 0.15 × 0.05 mm | |
| Oxford Diffraction SuperNova diffractometer | 3020 independent reflections |
| Radiation source: Nova Cu X-ray Source | 2671 reflections with |
| mirror | |
| ω scans | θmax = 68.2°, θmin = 6.7° |
| Absorption correction: multi-scan ( | |
| 9878 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3020 reflections | (Δ/σ)max < 0.001 |
| 226 parameters | Δρmax = 0.17 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N2 | 0.87262 (11) | 0.11061 (4) | 0.09736 (12) | 0.0241 (2) | |
| N7 | 0.66539 (11) | 0.16648 (4) | 0.09585 (12) | 0.0245 (2) | |
| H7N | 0.7317 | 0.1969 | 0.1069 | 0.029* | |
| N14 | 0.06413 (11) | 0.21713 (4) | 0.08789 (13) | 0.0261 (2) | |
| H14N | 0.0015 | 0.1862 | 0.0829 | 0.031* | |
| N16 | −0.13109 (11) | 0.27154 (4) | 0.11442 (12) | 0.0244 (2) | |
| C1 | 0.73812 (12) | 0.11242 (5) | 0.11994 (13) | 0.0210 (2) | |
| C3 | 0.95160 (13) | 0.05927 (5) | 0.12410 (15) | 0.0280 (3) | |
| H3 | 1.0460 | 0.0578 | 0.1073 | 0.034* | |
| C4 | 0.90549 (14) | 0.00852 (5) | 0.17415 (16) | 0.0298 (3) | |
| H4 | 0.9659 | −0.0267 | 0.1916 | 0.036* | |
| C5 | 0.76666 (14) | 0.01096 (5) | 0.19811 (14) | 0.0266 (2) | |
| H5 | 0.7314 | −0.0229 | 0.2341 | 0.032* | |
| C6 | 0.68089 (13) | 0.06259 (5) | 0.16949 (14) | 0.0234 (2) | |
| H6 | 0.5847 | 0.0646 | 0.1829 | 0.028* | |
| C8 | 0.51516 (13) | 0.17821 (4) | 0.09628 (13) | 0.0207 (2) | |
| C9 | 0.37373 (13) | 0.14622 (4) | −0.00512 (13) | 0.0213 (2) | |
| H9 | 0.3791 | 0.1146 | −0.0719 | 0.026* | |
| C10 | 0.22525 (13) | 0.16003 (4) | −0.00954 (13) | 0.0209 (2) | |
| H10 | 0.1301 | 0.1378 | −0.0795 | 0.025* | |
| C11 | 0.21415 (13) | 0.20611 (4) | 0.08742 (13) | 0.0212 (2) | |
| C12 | 0.35601 (13) | 0.23827 (5) | 0.18907 (14) | 0.0237 (2) | |
| H12 | 0.3507 | 0.2698 | 0.2561 | 0.028* | |
| C13 | 0.50413 (13) | 0.22456 (5) | 0.19288 (13) | 0.0225 (2) | |
| H13 | 0.5992 | 0.2470 | 0.2620 | 0.027* | |
| C15 | −0.00317 (13) | 0.27123 (5) | 0.08107 (13) | 0.0218 (2) | |
| C17 | −0.20195 (13) | 0.32340 (5) | 0.10952 (15) | 0.0273 (3) | |
| H17 | −0.2923 | 0.3238 | 0.1333 | 0.033* | |
| C18 | −0.15272 (14) | 0.37602 (5) | 0.07244 (15) | 0.0271 (2) | |
| H18 | −0.2051 | 0.4117 | 0.0736 | 0.032* | |
| C19 | −0.02310 (14) | 0.37485 (5) | 0.03317 (14) | 0.0260 (2) | |
| H19 | 0.0130 | 0.4100 | 0.0041 | 0.031* | |
| C20 | 0.05239 (13) | 0.32251 (5) | 0.03668 (14) | 0.0247 (2) | |
| H20 | 0.1405 | 0.3210 | 0.0096 | 0.030* | |
| C21 | 0.49781 (18) | 0.09257 (6) | 0.65351 (19) | 0.0418 (3) | |
| H21 | 0.5113 | 0.1219 | 0.7348 | 0.050* | |
| C22 | 0.41095 (17) | 0.10534 (6) | 0.4784 (2) | 0.0407 (3) | |
| H22 | 0.3659 | 0.1433 | 0.4418 | 0.049* | |
| C23 | 0.39118 (14) | 0.06342 (6) | 0.36099 (16) | 0.0338 (3) | |
| H23 | 0.3327 | 0.0726 | 0.2430 | 0.041* | |
| C24 | 0.45620 (13) | 0.00641 (5) | 0.41152 (14) | 0.0260 (2) | |
| C25 | 0.43734 (15) | −0.03839 (6) | 0.29296 (16) | 0.0347 (3) | |
| H25 | 0.3784 | −0.0304 | 0.1742 | 0.042* |
| N2 | 0.0202 (4) | 0.0227 (5) | 0.0307 (5) | −0.0003 (3) | 0.0131 (4) | −0.0019 (4) |
| N7 | 0.0202 (4) | 0.0190 (4) | 0.0381 (5) | −0.0005 (3) | 0.0169 (4) | 0.0010 (4) |
| N14 | 0.0216 (5) | 0.0195 (4) | 0.0415 (6) | −0.0003 (3) | 0.0184 (4) | −0.0002 (4) |
| N16 | 0.0201 (4) | 0.0214 (5) | 0.0329 (5) | 0.0005 (3) | 0.0135 (4) | −0.0004 (4) |
| C1 | 0.0183 (5) | 0.0210 (5) | 0.0223 (5) | −0.0006 (4) | 0.0084 (4) | −0.0027 (4) |
| C3 | 0.0220 (5) | 0.0275 (6) | 0.0365 (6) | 0.0019 (4) | 0.0154 (5) | −0.0039 (5) |
| C4 | 0.0278 (6) | 0.0227 (6) | 0.0369 (6) | 0.0056 (4) | 0.0135 (5) | −0.0008 (5) |
| C5 | 0.0275 (6) | 0.0209 (5) | 0.0287 (6) | −0.0019 (4) | 0.0110 (5) | 0.0001 (4) |
| C6 | 0.0208 (5) | 0.0238 (5) | 0.0266 (5) | −0.0013 (4) | 0.0118 (4) | −0.0010 (4) |
| C8 | 0.0188 (5) | 0.0189 (5) | 0.0249 (5) | 0.0023 (4) | 0.0108 (4) | 0.0042 (4) |
| C9 | 0.0236 (5) | 0.0183 (5) | 0.0236 (5) | 0.0005 (4) | 0.0123 (4) | −0.0003 (4) |
| C10 | 0.0191 (5) | 0.0193 (5) | 0.0227 (5) | −0.0016 (4) | 0.0085 (4) | 0.0015 (4) |
| C11 | 0.0197 (5) | 0.0192 (5) | 0.0258 (5) | 0.0024 (4) | 0.0115 (4) | 0.0034 (4) |
| C12 | 0.0239 (5) | 0.0211 (5) | 0.0269 (5) | 0.0013 (4) | 0.0124 (4) | −0.0028 (4) |
| C13 | 0.0192 (5) | 0.0209 (5) | 0.0247 (5) | −0.0020 (4) | 0.0081 (4) | −0.0011 (4) |
| C15 | 0.0177 (5) | 0.0221 (5) | 0.0236 (5) | 0.0003 (4) | 0.0078 (4) | −0.0012 (4) |
| C17 | 0.0216 (5) | 0.0258 (6) | 0.0364 (6) | 0.0022 (4) | 0.0151 (5) | −0.0016 (5) |
| C18 | 0.0248 (5) | 0.0212 (5) | 0.0313 (6) | 0.0047 (4) | 0.0098 (5) | −0.0005 (4) |
| C19 | 0.0250 (5) | 0.0224 (5) | 0.0255 (5) | −0.0019 (4) | 0.0077 (4) | 0.0019 (4) |
| C20 | 0.0213 (5) | 0.0261 (5) | 0.0276 (5) | −0.0002 (4) | 0.0122 (4) | 0.0015 (4) |
| C21 | 0.0534 (8) | 0.0369 (7) | 0.0546 (8) | −0.0155 (6) | 0.0416 (7) | −0.0104 (6) |
| C22 | 0.0383 (7) | 0.0321 (6) | 0.0674 (9) | 0.0032 (5) | 0.0378 (7) | 0.0111 (6) |
| C23 | 0.0219 (5) | 0.0436 (7) | 0.0356 (6) | 0.0009 (5) | 0.0132 (5) | 0.0154 (5) |
| C24 | 0.0186 (5) | 0.0352 (6) | 0.0250 (6) | −0.0054 (4) | 0.0108 (4) | 0.0041 (4) |
| C25 | 0.0350 (6) | 0.0458 (7) | 0.0272 (6) | −0.0154 (5) | 0.0178 (5) | −0.0032 (5) |
| N2—C3 | 1.3415 (14) | C11—C12 | 1.3996 (15) |
| N2—C1 | 1.3466 (14) | C12—C13 | 1.3864 (15) |
| N7—C1 | 1.3732 (13) | C12—H12 | 0.9500 |
| N7—C8 | 1.4129 (13) | C13—H13 | 0.9500 |
| N7—H7N | 0.9001 | C15—C20 | 1.4066 (15) |
| N14—C15 | 1.3711 (14) | C20—C19 | 1.3763 (16) |
| N14—C11 | 1.4081 (13) | C20—H20 | 0.9500 |
| N14—H14N | 0.8999 | C19—C18 | 1.3934 (16) |
| N16—C17 | 1.3436 (14) | C19—H19 | 0.9500 |
| N16—C15 | 1.3441 (14) | C18—C17 | 1.3778 (16) |
| C1—C6 | 1.4087 (15) | C18—H18 | 0.9500 |
| C3—C4 | 1.3778 (17) | C17—H17 | 0.9500 |
| C3—H3 | 0.9500 | C21—C25i | 1.359 (2) |
| C4—C5 | 1.3938 (16) | C21—C22 | 1.405 (2) |
| C4—H4 | 0.9500 | C21—H21 | 0.9500 |
| C5—C6 | 1.3756 (15) | C22—C23 | 1.363 (2) |
| C5—H5 | 0.9500 | C22—H22 | 0.9500 |
| C6—H6 | 0.9500 | C23—C24 | 1.4155 (18) |
| C8—C9 | 1.3947 (15) | C23—H23 | 0.9500 |
| C8—C13 | 1.3955 (15) | C24—C25 | 1.4188 (18) |
| C9—C10 | 1.3877 (15) | C24—C24i | 1.420 (2) |
| C9—H9 | 0.9500 | C25—C21i | 1.359 (2) |
| C10—C11 | 1.3934 (15) | C25—H25 | 0.9500 |
| C10—H10 | 0.9500 | ||
| C3—N2—C1 | 117.53 (9) | C13—C12—H12 | 119.7 |
| C1—N7—C8 | 125.32 (9) | C11—C12—H12 | 119.7 |
| C1—N7—H7N | 114.8 | C12—C13—C8 | 120.73 (10) |
| C8—N7—H7N | 118.1 | C12—C13—H13 | 119.6 |
| C15—N14—C11 | 125.87 (9) | C8—C13—H13 | 119.6 |
| C15—N14—H14N | 116.0 | N16—C15—N14 | 114.89 (9) |
| C11—N14—H14N | 117.9 | N16—C15—C20 | 121.99 (10) |
| C17—N16—C15 | 117.47 (9) | N14—C15—C20 | 123.08 (10) |
| N2—C1—N7 | 114.91 (9) | C19—C20—C15 | 118.86 (10) |
| N2—C1—C6 | 121.85 (9) | C19—C20—H20 | 120.6 |
| N7—C1—C6 | 123.22 (9) | C15—C20—H20 | 120.6 |
| N2—C3—C4 | 124.62 (10) | C20—C19—C18 | 119.67 (10) |
| N2—C3—H3 | 117.7 | C20—C19—H19 | 120.2 |
| C4—C3—H3 | 117.7 | C18—C19—H19 | 120.2 |
| C3—C4—C5 | 117.38 (10) | C17—C18—C19 | 117.42 (10) |
| C3—C4—H4 | 121.3 | C17—C18—H18 | 121.3 |
| C5—C4—H4 | 121.3 | C19—C18—H18 | 121.3 |
| C6—C5—C4 | 119.73 (10) | N16—C17—C18 | 124.53 (10) |
| C6—C5—H5 | 120.1 | N16—C17—H17 | 117.7 |
| C4—C5—H5 | 120.1 | C18—C17—H17 | 117.7 |
| C5—C6—C1 | 118.88 (10) | C25i—C21—C22 | 120.32 (13) |
| C5—C6—H6 | 120.6 | C25i—C21—H21 | 119.8 |
| C1—C6—H6 | 120.6 | C22—C21—H21 | 119.8 |
| C9—C8—C13 | 118.59 (9) | C23—C22—C21 | 120.17 (12) |
| C9—C8—N7 | 121.38 (9) | C23—C22—H22 | 119.9 |
| C13—C8—N7 | 119.95 (9) | C21—C22—H22 | 119.9 |
| C10—C9—C8 | 120.75 (10) | C22—C23—C24 | 121.24 (12) |
| C10—C9—H9 | 119.6 | C22—C23—H23 | 119.4 |
| C8—C9—H9 | 119.6 | C24—C23—H23 | 119.4 |
| C9—C10—C11 | 120.75 (10) | C23—C24—C25 | 122.80 (11) |
| C9—C10—H10 | 119.6 | C23—C24—C24i | 118.50 (14) |
| C11—C10—H10 | 119.6 | C25—C24—C24i | 118.70 (14) |
| C10—C11—C12 | 118.52 (9) | C21i—C25—C24 | 121.07 (12) |
| C10—C11—N14 | 119.57 (9) | C21i—C25—H25 | 119.5 |
| C12—C11—N14 | 121.83 (10) | C24—C25—H25 | 119.5 |
| C13—C12—C11 | 120.67 (10) | ||
| C3—N2—C1—N7 | 178.10 (10) | N14—C11—C12—C13 | 176.65 (10) |
| C3—N2—C1—C6 | −0.10 (15) | C11—C12—C13—C8 | −0.39 (16) |
| C8—N7—C1—N2 | 173.65 (10) | C9—C8—C13—C12 | 0.44 (16) |
| C8—N7—C1—C6 | −8.18 (17) | N7—C8—C13—C12 | 177.21 (10) |
| C1—N2—C3—C4 | −0.51 (17) | C17—N16—C15—N14 | −179.99 (10) |
| N2—C3—C4—C5 | 0.15 (18) | C17—N16—C15—C20 | −2.18 (16) |
| C3—C4—C5—C6 | 0.83 (17) | C11—N14—C15—N16 | −168.34 (10) |
| C4—C5—C6—C1 | −1.40 (16) | C11—N14—C15—C20 | 13.88 (17) |
| N2—C1—C6—C5 | 1.05 (16) | N16—C15—C20—C19 | 2.30 (16) |
| N7—C1—C6—C5 | −176.99 (10) | N14—C15—C20—C19 | 179.93 (10) |
| C1—N7—C8—C9 | −51.81 (15) | C15—C20—C19—C18 | −0.34 (16) |
| C1—N7—C8—C13 | 131.51 (11) | C20—C19—C18—C17 | −1.53 (16) |
| C13—C8—C9—C10 | −0.20 (15) | C15—N16—C17—C18 | 0.14 (17) |
| N7—C8—C9—C10 | −176.92 (9) | C19—C18—C17—N16 | 1.71 (18) |
| C8—C9—C10—C11 | −0.10 (16) | C25i—C21—C22—C23 | −0.01 (19) |
| C9—C10—C11—C12 | 0.16 (15) | C21—C22—C23—C24 | 0.29 (18) |
| C9—C10—C11—N14 | −176.49 (9) | C22—C23—C24—C25 | 179.68 (11) |
| C15—N14—C11—C10 | −138.39 (11) | C22—C23—C24—C24i | −0.23 (19) |
| C15—N14—C11—C12 | 45.08 (16) | C23—C24—C25—C21i | 179.73 (11) |
| C10—C11—C12—C13 | 0.08 (16) | C24i—C24—C25—C21i | −0.36 (19) |
| H··· | ||||
| N7—H7N···N16ii | 0.90 | 2.11 | 3.0027 (13) | 175 |
| N14—H14N···N2iii | 0.90 | 2.13 | 3.0305 (13) | 174 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N7—H7 | 0.90 | 2.11 | 3.0027 (13) | 175 |
| N14—H14 | 0.90 | 2.13 | 3.0305 (13) | 174 |
Symmetry codes: (i) ; (ii) .