Literature DB >> 22199763

N,N'-Bis(pyridin-2-yl)benzene-1,4-diamine-quinoxaline (2/1).

Barbara Wicher1, Maria Gdaniec.   

Abstract

The asymmetric unit of the title compound, 2C(16)H(14)N(4C(8)H(6)N(2), consits of one mol-ecule of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine (PDAB) and one half-mol-ecule of quinoxaline (QX) that is located around an inversion centre and disordered over two overlapping positions. The PDAB mol-ecule adopts a non-planar conformation with an E configuration at the two partially double exo C N bonds of the 2-pyridyl-amine units. In the crystal, these self-complementary units are N-H⋯N hydrogen bonded via a cyclic R(2) (2)(8) motif, creating tapes of PDAB mol-ecules extending along [010]. Inversion-related tapes are arranged into pairs through π-π stacking inter-actions between the benzene rings [centroid-centroid distance = 3.818 (1) Å] and the two symmetry-independent pyridine groups [centroid-centroid distance = 3.760 (1) Å]. The QX mol-ecules are enclosed in a cavity formed between six PDAB tapes.

Entities:  

Year:  2011        PMID: 22199763      PMCID: PMC3238910          DOI: 10.1107/S1600536811046356

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of polymorphic forms of N,N′-di(pyridin-2-yl)benzene-1,4-diamine and its co-crystal with phenazine, see: Bensemann et al. (2002 ▶); Wicher & Gdaniec (2011 ▶); Gdaniec et al. (2005 ▶).

Experimental

Crystal data

2C16H14N4·C8H6N2 M = 654.77 Monoclinic, a = 11.8285 (9) Å b = 9.1223 (7) Å c = 14.7952 (9) Å β = 93.698 (5)° V = 1593.1 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 130 K 0.50 × 0.30 × 0.25 mm

Data collection

Kuma KM-4-CCD κ-geometry diffractometer 8116 measured reflections 2897 independent reflections 2082 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.121 S = 0.97 2897 reflections 226 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2002 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2002 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811046356/rz2662sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811046356/rz2662Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C16H14N4·C8H6N2F(000) = 688
Mr = 654.77Dx = 1.365 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2533 reflections
a = 11.8285 (9) Åθ = 4.1–25.0°
b = 9.1223 (7) ŵ = 0.09 mm1
c = 14.7952 (9) ÅT = 130 K
β = 93.698 (5)°Prism, colourless
V = 1593.1 (2) Å30.50 × 0.30 × 0.25 mm
Z = 2
Kuma KM-4-CCD κ-geometry diffractometer2082 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
graphiteθmax = 25.4°, θmin = 4.1°
ω scansh = −13→14
8116 measured reflectionsk = −10→9
2897 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0796P)2] where P = (Fo2 + 2Fc2)/3
2897 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N20.34420 (10)0.46004 (13)0.12792 (9)0.0251 (3)
N70.44563 (11)0.24793 (13)0.12278 (9)0.0291 (3)
H7N0.50370.30820.11260.035*
N140.55190 (10)−0.35168 (13)0.12548 (9)0.0295 (3)
H14N0.4941−0.41220.13590.035*
N160.65420 (10)−0.56243 (13)0.11839 (9)0.0260 (3)
C10.34338 (12)0.31287 (16)0.13482 (10)0.0232 (4)
C30.24879 (13)0.53106 (17)0.14294 (10)0.0282 (4)
H30.24920.63490.13820.034*
C40.15003 (13)0.46477 (18)0.16475 (11)0.0301 (4)
H40.08410.52050.17450.036*
C50.15028 (13)0.31317 (18)0.17200 (11)0.0292 (4)
H50.08390.26300.18760.035*
C60.24654 (13)0.23600 (17)0.15651 (10)0.0266 (4)
H60.24740.13210.16040.032*
C80.46942 (13)0.09666 (16)0.12475 (10)0.0243 (4)
C90.40085 (12)−0.00484 (17)0.07789 (10)0.0264 (4)
H90.33350.02690.04520.032*
C100.42953 (13)−0.15119 (16)0.07830 (10)0.0256 (4)
H100.3813−0.21950.04630.031*
C110.52812 (13)−0.20032 (16)0.12488 (10)0.0253 (4)
C120.59638 (13)−0.09904 (17)0.17195 (11)0.0272 (4)
H120.6637−0.13070.20470.033*
C130.56739 (13)0.04714 (17)0.17172 (10)0.0270 (4)
H130.61520.11520.20420.032*
C150.65386 (13)−0.41581 (16)0.11138 (10)0.0239 (4)
C170.75049 (13)−0.63284 (18)0.10303 (11)0.0302 (4)
H170.7507−0.73670.10740.036*
C180.84841 (14)−0.56538 (18)0.08156 (11)0.0310 (4)
H180.9149−0.62010.07190.037*
C190.84671 (13)−0.41393 (18)0.07442 (11)0.0303 (4)
H190.9129−0.36280.05940.036*
C200.75006 (13)−0.33812 (17)0.08900 (10)0.0276 (4)
H200.7482−0.23430.08400.033*
C210.42626 (15)0.38226 (19)0.36086 (12)0.0393 (5)
H210.38390.33100.31420.047*
C220.53039 (16)0.44592 (18)0.34188 (13)0.0410 (5)
H220.55700.43630.28290.049*
N230.59282 (13)0.51949 (17)0.40527 (11)0.0368 (4)0.50
C230.59282 (13)0.51949 (17)0.40527 (11)0.0368 (4)0.50
H230.66290.56290.39220.044*0.50
C240.55231 (12)0.53158 (16)0.49075 (11)0.0275 (4)
C250.61465 (13)0.60804 (16)0.55764 (11)0.0357 (4)0.50
H250.68460.65290.54570.043*0.50
N250.61465 (13)0.60804 (16)0.55764 (11)0.0357 (4)0.50
U11U22U33U12U13U23
N20.0240 (7)0.0225 (7)0.0290 (7)0.0005 (5)0.0025 (6)−0.0026 (5)
N70.0227 (7)0.0202 (7)0.0449 (9)−0.0022 (5)0.0067 (6)−0.0004 (6)
N140.0224 (7)0.0208 (7)0.0457 (9)−0.0006 (5)0.0056 (6)0.0047 (6)
N160.0248 (7)0.0229 (7)0.0301 (8)0.0004 (5)0.0011 (6)−0.0004 (6)
C10.0249 (8)0.0223 (8)0.0223 (8)−0.0012 (6)0.0010 (6)−0.0020 (6)
C30.0301 (9)0.0246 (8)0.0298 (9)0.0026 (7)0.0012 (7)−0.0040 (7)
C40.0243 (8)0.0339 (9)0.0323 (9)0.0032 (7)0.0030 (7)−0.0048 (7)
C50.0247 (8)0.0361 (9)0.0270 (9)−0.0044 (7)0.0026 (7)−0.0009 (7)
C60.0283 (9)0.0239 (8)0.0277 (9)−0.0022 (7)0.0019 (7)0.0000 (6)
C80.0238 (8)0.0212 (8)0.0284 (9)−0.0007 (6)0.0059 (7)0.0001 (6)
C90.0241 (8)0.0258 (8)0.0292 (9)0.0000 (7)0.0004 (7)0.0024 (7)
C100.0244 (8)0.0253 (8)0.0271 (9)−0.0034 (6)0.0010 (6)−0.0015 (6)
C110.0257 (8)0.0219 (8)0.0289 (9)0.0009 (6)0.0056 (7)0.0024 (6)
C120.0231 (8)0.0299 (9)0.0283 (9)0.0019 (7)0.0003 (7)0.0026 (7)
C130.0248 (8)0.0277 (9)0.0288 (9)−0.0034 (7)0.0034 (7)−0.0035 (7)
C150.0242 (8)0.0246 (8)0.0225 (8)0.0002 (6)−0.0007 (6)0.0002 (6)
C170.0298 (9)0.0267 (8)0.0336 (9)0.0037 (7)−0.0010 (7)−0.0037 (7)
C180.0259 (9)0.0337 (9)0.0334 (9)0.0028 (7)0.0011 (7)−0.0068 (7)
C190.0231 (9)0.0374 (10)0.0302 (9)−0.0054 (7)0.0012 (7)−0.0031 (7)
C200.0273 (9)0.0259 (8)0.0292 (9)−0.0028 (7)−0.0004 (7)0.0008 (7)
C210.0462 (11)0.0331 (10)0.0372 (11)−0.0056 (8)−0.0086 (9)0.0026 (8)
C220.0550 (12)0.0324 (10)0.0362 (10)0.0004 (9)0.0081 (9)0.0027 (8)
N230.0364 (9)0.0337 (9)0.0411 (10)−0.0045 (7)0.0092 (7)0.0025 (7)
C230.0364 (9)0.0337 (9)0.0411 (10)−0.0045 (7)0.0092 (7)0.0025 (7)
C240.0263 (8)0.0214 (8)0.0344 (9)0.0003 (6)−0.0005 (7)0.0021 (7)
C250.0314 (8)0.0331 (9)0.0417 (10)−0.0057 (7)−0.0055 (7)0.0031 (7)
N250.0314 (8)0.0331 (9)0.0417 (10)−0.0057 (7)−0.0055 (7)0.0031 (7)
N2—C31.3324 (18)C11—C121.385 (2)
N2—C11.3465 (19)C12—C131.377 (2)
N7—C11.3686 (19)C12—H120.9500
N7—C81.4083 (19)C13—H130.9500
N7—H7N0.9001C15—C201.398 (2)
N14—C151.3685 (19)C17—C181.367 (2)
N14—C111.4090 (19)C17—H170.9500
N14—H14N0.9000C18—C191.386 (2)
N16—C171.3397 (19)C18—H180.9500
N16—C151.3415 (19)C19—C201.365 (2)
C1—C61.398 (2)C19—H190.9500
C3—C41.372 (2)C20—H200.9500
C3—H30.9500C21—N25i1.331 (2)
C4—C51.387 (2)C21—C25i1.331 (2)
C4—H40.9500C21—C221.406 (3)
C5—C61.370 (2)C21—H210.9499
C5—H50.9500C22—N231.336 (2)
C6—H60.9500C22—H220.9500
C8—C91.387 (2)N23—C241.385 (2)
C8—C131.388 (2)N23—H230.9500
C9—C101.377 (2)C24—C251.384 (2)
C9—H90.9500C24—C24i1.408 (3)
C10—C111.390 (2)C25—C21i1.331 (2)
C10—H100.9500C25—H250.9499
C3—N2—C1117.51 (13)C11—C12—H12119.7
C1—N7—C8126.76 (13)C12—C13—C8121.08 (14)
C1—N7—H7N116.6C12—C13—H13119.5
C8—N7—H7N116.6C8—C13—H13119.5
C15—N14—C11126.54 (13)N16—C15—N14114.37 (13)
C15—N14—H14N116.8N16—C15—C20121.68 (14)
C11—N14—H14N116.7N14—C15—C20123.92 (14)
C17—N16—C15117.59 (14)N16—C17—C18124.47 (15)
N2—C1—N7114.27 (13)N16—C17—H17117.8
N2—C1—C6121.83 (14)C18—C17—H17117.8
N7—C1—C6123.84 (14)C17—C18—C19117.27 (15)
N2—C3—C4124.61 (15)C17—C18—H18121.4
N2—C3—H3117.7C19—C18—H18121.4
C4—C3—H3117.7C20—C19—C18120.08 (15)
C3—C4—C5117.38 (15)C20—C19—H19120.0
C3—C4—H4121.3C18—C19—H19120.0
C5—C4—H4121.3C19—C20—C15118.89 (15)
C6—C5—C4119.79 (15)C19—C20—H20120.6
C6—C5—H5120.1C15—C20—H20120.6
C4—C5—H5120.1N25i—C21—C22121.85 (16)
C5—C6—C1118.86 (15)C25i—C21—C22121.85 (16)
C5—C6—H6120.6N25i—C21—H21119.1
C1—C6—H6120.6C25i—C21—H21119.1
C9—C8—C13118.40 (14)C22—C21—H21119.1
C9—C8—N7122.29 (14)N23—C22—C21121.25 (17)
C13—C8—N7119.25 (13)N23—C22—H22119.3
C10—C9—C8120.60 (14)C21—C22—H22119.4
C10—C9—H9119.7C22—N23—C24118.20 (15)
C8—C9—H9119.7C22—N23—H23121.1
C9—C10—C11120.88 (14)C24—N23—H23120.7
C9—C10—H10119.6C25—C24—N23119.55 (14)
C11—C10—H10119.6C25—C24—C24i120.10 (19)
C12—C11—C10118.52 (14)N23—C24—C24i120.34 (18)
C12—C11—N14122.74 (14)C21i—C25—C24118.25 (15)
C10—C11—N14118.68 (13)C21i—C25—H25120.8
C13—C12—C11120.52 (14)C24—C25—H25120.9
C13—C12—H12119.7
C3—N2—C1—N7−177.03 (13)C11—C12—C13—C80.1 (2)
C3—N2—C1—C60.3 (2)C9—C8—C13—C120.1 (2)
C8—N7—C1—N2−178.90 (14)N7—C8—C13—C12−177.06 (14)
C8—N7—C1—C63.9 (2)C17—N16—C15—N14178.27 (13)
C1—N2—C3—C4−0.1 (2)C17—N16—C15—C20−0.1 (2)
N2—C3—C4—C50.3 (2)C11—N14—C15—N16178.07 (14)
C3—C4—C5—C6−0.7 (2)C11—N14—C15—C20−3.6 (2)
C4—C5—C6—C10.9 (2)C15—N16—C17—C180.6 (2)
N2—C1—C6—C5−0.7 (2)N16—C17—C18—C19−0.7 (2)
N7—C1—C6—C5176.37 (14)C17—C18—C19—C200.3 (2)
C1—N7—C8—C947.3 (2)C18—C19—C20—C150.2 (2)
C1—N7—C8—C13−135.63 (16)N16—C15—C20—C19−0.3 (2)
C13—C8—C9—C100.1 (2)N14—C15—C20—C19−178.51 (14)
N7—C8—C9—C10177.18 (14)N25i—C21—C22—N23−0.1 (3)
C8—C9—C10—C11−0.6 (2)C25i—C21—C22—N23−0.1 (3)
C9—C10—C11—C120.8 (2)C21—C22—N23—C240.0 (3)
C9—C10—C11—N14178.09 (14)C22—N23—C24—C25−179.52 (15)
C15—N14—C11—C12−48.1 (2)C22—N23—C24—C24i−0.4 (3)
C15—N14—C11—C10134.72 (16)N23—C24—C25—C21i−179.92 (15)
C10—C11—C12—C13−0.6 (2)C24i—C24—C25—C21i1.0 (3)
N14—C11—C12—C13−177.76 (14)
D—H···AD—HH···AD···AD—H···A
N14—H14N···N2ii0.902.122.9998 (17)166
N7—H7N···N16iii0.902.133.0173 (18)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N14—H14N⋯N2i0.902.122.9998 (17)166
N7—H7N⋯N16ii0.902.133.0173 (18)167

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A third polymorph of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine.

Authors:  Barbara Wicher; Maria Gdaniec
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  2 in total
  1 in total

1.  N,N'-Bis(pyridin-2-yl)benzene-1,4-diamine-naphthalene (2/1).

Authors:  Barbara Wicher; Maria Gdaniec
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.