| Literature DB >> 22199763 |
Barbara Wicher1, Maria Gdaniec.
Abstract
The asymmetric unit of the title compound, 2C(16)H(14)N(4)·C(8)H(6)N(2), consits of one mol-ecule of N,N'-bis-(pyridin-2-yl)benzene-1,4-diamine (PDAB) and one half-mol-ecule of quinoxaline (QX) that is located around an inversion centre and disordered over two overlapping positions. The PDAB mol-ecule adopts a non-planar conformation with an E configuration at the two partially double exo C N bonds of the 2-pyridyl-amine units. In the crystal, these self-complementary units are N-H⋯N hydrogen bonded via a cyclic R(2) (2)(8) motif, creating tapes of PDAB mol-ecules extending along [010]. Inversion-related tapes are arranged into pairs through π-π stacking inter-actions between the benzene rings [centroid-centroid distance = 3.818 (1) Å] and the two symmetry-independent pyridine groups [centroid-centroid distance = 3.760 (1) Å]. The QX mol-ecules are enclosed in a cavity formed between six PDAB tapes.Entities:
Year: 2011 PMID: 22199763 PMCID: PMC3238910 DOI: 10.1107/S1600536811046356
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C16H14N4·C8H6N2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2533 reflections |
| θ = 4.1–25.0° | |
| µ = 0.09 mm−1 | |
| β = 93.698 (5)° | Prism, colourless |
| 0.50 × 0.30 × 0.25 mm | |
| Kuma KM-4-CCD κ-geometry diffractometer | 2082 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.4°, θmin = 4.1° |
| ω scans | |
| 8116 measured reflections | |
| 2897 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2897 reflections | (Δ/σ)max < 0.001 |
| 226 parameters | Δρmax = 0.22 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| N2 | 0.34420 (10) | 0.46004 (13) | 0.12792 (9) | 0.0251 (3) | |
| N7 | 0.44563 (11) | 0.24793 (13) | 0.12278 (9) | 0.0291 (3) | |
| H7N | 0.5037 | 0.3082 | 0.1126 | 0.035* | |
| N14 | 0.55190 (10) | −0.35168 (13) | 0.12548 (9) | 0.0295 (3) | |
| H14N | 0.4941 | −0.4122 | 0.1359 | 0.035* | |
| N16 | 0.65420 (10) | −0.56243 (13) | 0.11839 (9) | 0.0260 (3) | |
| C1 | 0.34338 (12) | 0.31287 (16) | 0.13482 (10) | 0.0232 (4) | |
| C3 | 0.24879 (13) | 0.53106 (17) | 0.14294 (10) | 0.0282 (4) | |
| H3 | 0.2492 | 0.6349 | 0.1382 | 0.034* | |
| C4 | 0.15003 (13) | 0.46477 (18) | 0.16475 (11) | 0.0301 (4) | |
| H4 | 0.0841 | 0.5205 | 0.1745 | 0.036* | |
| C5 | 0.15028 (13) | 0.31317 (18) | 0.17200 (11) | 0.0292 (4) | |
| H5 | 0.0839 | 0.2630 | 0.1876 | 0.035* | |
| C6 | 0.24654 (13) | 0.23600 (17) | 0.15651 (10) | 0.0266 (4) | |
| H6 | 0.2474 | 0.1321 | 0.1604 | 0.032* | |
| C8 | 0.46942 (13) | 0.09666 (16) | 0.12475 (10) | 0.0243 (4) | |
| C9 | 0.40085 (12) | −0.00484 (17) | 0.07789 (10) | 0.0264 (4) | |
| H9 | 0.3335 | 0.0269 | 0.0452 | 0.032* | |
| C10 | 0.42953 (13) | −0.15119 (16) | 0.07830 (10) | 0.0256 (4) | |
| H10 | 0.3813 | −0.2195 | 0.0463 | 0.031* | |
| C11 | 0.52812 (13) | −0.20032 (16) | 0.12488 (10) | 0.0253 (4) | |
| C12 | 0.59638 (13) | −0.09904 (17) | 0.17195 (11) | 0.0272 (4) | |
| H12 | 0.6637 | −0.1307 | 0.2047 | 0.033* | |
| C13 | 0.56739 (13) | 0.04714 (17) | 0.17172 (10) | 0.0270 (4) | |
| H13 | 0.6152 | 0.1152 | 0.2042 | 0.032* | |
| C15 | 0.65386 (13) | −0.41581 (16) | 0.11138 (10) | 0.0239 (4) | |
| C17 | 0.75049 (13) | −0.63284 (18) | 0.10303 (11) | 0.0302 (4) | |
| H17 | 0.7507 | −0.7367 | 0.1074 | 0.036* | |
| C18 | 0.84841 (14) | −0.56538 (18) | 0.08156 (11) | 0.0310 (4) | |
| H18 | 0.9149 | −0.6201 | 0.0719 | 0.037* | |
| C19 | 0.84671 (13) | −0.41393 (18) | 0.07442 (11) | 0.0303 (4) | |
| H19 | 0.9129 | −0.3628 | 0.0594 | 0.036* | |
| C20 | 0.75006 (13) | −0.33812 (17) | 0.08900 (10) | 0.0276 (4) | |
| H20 | 0.7482 | −0.2343 | 0.0840 | 0.033* | |
| C21 | 0.42626 (15) | 0.38226 (19) | 0.36086 (12) | 0.0393 (5) | |
| H21 | 0.3839 | 0.3310 | 0.3142 | 0.047* | |
| C22 | 0.53039 (16) | 0.44592 (18) | 0.34188 (13) | 0.0410 (5) | |
| H22 | 0.5570 | 0.4363 | 0.2829 | 0.049* | |
| N23 | 0.59282 (13) | 0.51949 (17) | 0.40527 (11) | 0.0368 (4) | 0.50 |
| C23 | 0.59282 (13) | 0.51949 (17) | 0.40527 (11) | 0.0368 (4) | 0.50 |
| H23 | 0.6629 | 0.5629 | 0.3922 | 0.044* | 0.50 |
| C24 | 0.55231 (12) | 0.53158 (16) | 0.49075 (11) | 0.0275 (4) | |
| C25 | 0.61465 (13) | 0.60804 (16) | 0.55764 (11) | 0.0357 (4) | 0.50 |
| H25 | 0.6846 | 0.6529 | 0.5457 | 0.043* | 0.50 |
| N25 | 0.61465 (13) | 0.60804 (16) | 0.55764 (11) | 0.0357 (4) | 0.50 |
| N2 | 0.0240 (7) | 0.0225 (7) | 0.0290 (7) | 0.0005 (5) | 0.0025 (6) | −0.0026 (5) |
| N7 | 0.0227 (7) | 0.0202 (7) | 0.0449 (9) | −0.0022 (5) | 0.0067 (6) | −0.0004 (6) |
| N14 | 0.0224 (7) | 0.0208 (7) | 0.0457 (9) | −0.0006 (5) | 0.0056 (6) | 0.0047 (6) |
| N16 | 0.0248 (7) | 0.0229 (7) | 0.0301 (8) | 0.0004 (5) | 0.0011 (6) | −0.0004 (6) |
| C1 | 0.0249 (8) | 0.0223 (8) | 0.0223 (8) | −0.0012 (6) | 0.0010 (6) | −0.0020 (6) |
| C3 | 0.0301 (9) | 0.0246 (8) | 0.0298 (9) | 0.0026 (7) | 0.0012 (7) | −0.0040 (7) |
| C4 | 0.0243 (8) | 0.0339 (9) | 0.0323 (9) | 0.0032 (7) | 0.0030 (7) | −0.0048 (7) |
| C5 | 0.0247 (8) | 0.0361 (9) | 0.0270 (9) | −0.0044 (7) | 0.0026 (7) | −0.0009 (7) |
| C6 | 0.0283 (9) | 0.0239 (8) | 0.0277 (9) | −0.0022 (7) | 0.0019 (7) | 0.0000 (6) |
| C8 | 0.0238 (8) | 0.0212 (8) | 0.0284 (9) | −0.0007 (6) | 0.0059 (7) | 0.0001 (6) |
| C9 | 0.0241 (8) | 0.0258 (8) | 0.0292 (9) | 0.0000 (7) | 0.0004 (7) | 0.0024 (7) |
| C10 | 0.0244 (8) | 0.0253 (8) | 0.0271 (9) | −0.0034 (6) | 0.0010 (6) | −0.0015 (6) |
| C11 | 0.0257 (8) | 0.0219 (8) | 0.0289 (9) | 0.0009 (6) | 0.0056 (7) | 0.0024 (6) |
| C12 | 0.0231 (8) | 0.0299 (9) | 0.0283 (9) | 0.0019 (7) | 0.0003 (7) | 0.0026 (7) |
| C13 | 0.0248 (8) | 0.0277 (9) | 0.0288 (9) | −0.0034 (7) | 0.0034 (7) | −0.0035 (7) |
| C15 | 0.0242 (8) | 0.0246 (8) | 0.0225 (8) | 0.0002 (6) | −0.0007 (6) | 0.0002 (6) |
| C17 | 0.0298 (9) | 0.0267 (8) | 0.0336 (9) | 0.0037 (7) | −0.0010 (7) | −0.0037 (7) |
| C18 | 0.0259 (9) | 0.0337 (9) | 0.0334 (9) | 0.0028 (7) | 0.0011 (7) | −0.0068 (7) |
| C19 | 0.0231 (9) | 0.0374 (10) | 0.0302 (9) | −0.0054 (7) | 0.0012 (7) | −0.0031 (7) |
| C20 | 0.0273 (9) | 0.0259 (8) | 0.0292 (9) | −0.0028 (7) | −0.0004 (7) | 0.0008 (7) |
| C21 | 0.0462 (11) | 0.0331 (10) | 0.0372 (11) | −0.0056 (8) | −0.0086 (9) | 0.0026 (8) |
| C22 | 0.0550 (12) | 0.0324 (10) | 0.0362 (10) | 0.0004 (9) | 0.0081 (9) | 0.0027 (8) |
| N23 | 0.0364 (9) | 0.0337 (9) | 0.0411 (10) | −0.0045 (7) | 0.0092 (7) | 0.0025 (7) |
| C23 | 0.0364 (9) | 0.0337 (9) | 0.0411 (10) | −0.0045 (7) | 0.0092 (7) | 0.0025 (7) |
| C24 | 0.0263 (8) | 0.0214 (8) | 0.0344 (9) | 0.0003 (6) | −0.0005 (7) | 0.0021 (7) |
| C25 | 0.0314 (8) | 0.0331 (9) | 0.0417 (10) | −0.0057 (7) | −0.0055 (7) | 0.0031 (7) |
| N25 | 0.0314 (8) | 0.0331 (9) | 0.0417 (10) | −0.0057 (7) | −0.0055 (7) | 0.0031 (7) |
| N2—C3 | 1.3324 (18) | C11—C12 | 1.385 (2) |
| N2—C1 | 1.3465 (19) | C12—C13 | 1.377 (2) |
| N7—C1 | 1.3686 (19) | C12—H12 | 0.9500 |
| N7—C8 | 1.4083 (19) | C13—H13 | 0.9500 |
| N7—H7N | 0.9001 | C15—C20 | 1.398 (2) |
| N14—C15 | 1.3685 (19) | C17—C18 | 1.367 (2) |
| N14—C11 | 1.4090 (19) | C17—H17 | 0.9500 |
| N14—H14N | 0.9000 | C18—C19 | 1.386 (2) |
| N16—C17 | 1.3397 (19) | C18—H18 | 0.9500 |
| N16—C15 | 1.3415 (19) | C19—C20 | 1.365 (2) |
| C1—C6 | 1.398 (2) | C19—H19 | 0.9500 |
| C3—C4 | 1.372 (2) | C20—H20 | 0.9500 |
| C3—H3 | 0.9500 | C21—N25i | 1.331 (2) |
| C4—C5 | 1.387 (2) | C21—C25i | 1.331 (2) |
| C4—H4 | 0.9500 | C21—C22 | 1.406 (3) |
| C5—C6 | 1.370 (2) | C21—H21 | 0.9499 |
| C5—H5 | 0.9500 | C22—N23 | 1.336 (2) |
| C6—H6 | 0.9500 | C22—H22 | 0.9500 |
| C8—C9 | 1.387 (2) | N23—C24 | 1.385 (2) |
| C8—C13 | 1.388 (2) | N23—H23 | 0.9500 |
| C9—C10 | 1.377 (2) | C24—C25 | 1.384 (2) |
| C9—H9 | 0.9500 | C24—C24i | 1.408 (3) |
| C10—C11 | 1.390 (2) | C25—C21i | 1.331 (2) |
| C10—H10 | 0.9500 | C25—H25 | 0.9499 |
| C3—N2—C1 | 117.51 (13) | C11—C12—H12 | 119.7 |
| C1—N7—C8 | 126.76 (13) | C12—C13—C8 | 121.08 (14) |
| C1—N7—H7N | 116.6 | C12—C13—H13 | 119.5 |
| C8—N7—H7N | 116.6 | C8—C13—H13 | 119.5 |
| C15—N14—C11 | 126.54 (13) | N16—C15—N14 | 114.37 (13) |
| C15—N14—H14N | 116.8 | N16—C15—C20 | 121.68 (14) |
| C11—N14—H14N | 116.7 | N14—C15—C20 | 123.92 (14) |
| C17—N16—C15 | 117.59 (14) | N16—C17—C18 | 124.47 (15) |
| N2—C1—N7 | 114.27 (13) | N16—C17—H17 | 117.8 |
| N2—C1—C6 | 121.83 (14) | C18—C17—H17 | 117.8 |
| N7—C1—C6 | 123.84 (14) | C17—C18—C19 | 117.27 (15) |
| N2—C3—C4 | 124.61 (15) | C17—C18—H18 | 121.4 |
| N2—C3—H3 | 117.7 | C19—C18—H18 | 121.4 |
| C4—C3—H3 | 117.7 | C20—C19—C18 | 120.08 (15) |
| C3—C4—C5 | 117.38 (15) | C20—C19—H19 | 120.0 |
| C3—C4—H4 | 121.3 | C18—C19—H19 | 120.0 |
| C5—C4—H4 | 121.3 | C19—C20—C15 | 118.89 (15) |
| C6—C5—C4 | 119.79 (15) | C19—C20—H20 | 120.6 |
| C6—C5—H5 | 120.1 | C15—C20—H20 | 120.6 |
| C4—C5—H5 | 120.1 | N25i—C21—C22 | 121.85 (16) |
| C5—C6—C1 | 118.86 (15) | C25i—C21—C22 | 121.85 (16) |
| C5—C6—H6 | 120.6 | N25i—C21—H21 | 119.1 |
| C1—C6—H6 | 120.6 | C25i—C21—H21 | 119.1 |
| C9—C8—C13 | 118.40 (14) | C22—C21—H21 | 119.1 |
| C9—C8—N7 | 122.29 (14) | N23—C22—C21 | 121.25 (17) |
| C13—C8—N7 | 119.25 (13) | N23—C22—H22 | 119.3 |
| C10—C9—C8 | 120.60 (14) | C21—C22—H22 | 119.4 |
| C10—C9—H9 | 119.7 | C22—N23—C24 | 118.20 (15) |
| C8—C9—H9 | 119.7 | C22—N23—H23 | 121.1 |
| C9—C10—C11 | 120.88 (14) | C24—N23—H23 | 120.7 |
| C9—C10—H10 | 119.6 | C25—C24—N23 | 119.55 (14) |
| C11—C10—H10 | 119.6 | C25—C24—C24i | 120.10 (19) |
| C12—C11—C10 | 118.52 (14) | N23—C24—C24i | 120.34 (18) |
| C12—C11—N14 | 122.74 (14) | C21i—C25—C24 | 118.25 (15) |
| C10—C11—N14 | 118.68 (13) | C21i—C25—H25 | 120.8 |
| C13—C12—C11 | 120.52 (14) | C24—C25—H25 | 120.9 |
| C13—C12—H12 | 119.7 | ||
| C3—N2—C1—N7 | −177.03 (13) | C11—C12—C13—C8 | 0.1 (2) |
| C3—N2—C1—C6 | 0.3 (2) | C9—C8—C13—C12 | 0.1 (2) |
| C8—N7—C1—N2 | −178.90 (14) | N7—C8—C13—C12 | −177.06 (14) |
| C8—N7—C1—C6 | 3.9 (2) | C17—N16—C15—N14 | 178.27 (13) |
| C1—N2—C3—C4 | −0.1 (2) | C17—N16—C15—C20 | −0.1 (2) |
| N2—C3—C4—C5 | 0.3 (2) | C11—N14—C15—N16 | 178.07 (14) |
| C3—C4—C5—C6 | −0.7 (2) | C11—N14—C15—C20 | −3.6 (2) |
| C4—C5—C6—C1 | 0.9 (2) | C15—N16—C17—C18 | 0.6 (2) |
| N2—C1—C6—C5 | −0.7 (2) | N16—C17—C18—C19 | −0.7 (2) |
| N7—C1—C6—C5 | 176.37 (14) | C17—C18—C19—C20 | 0.3 (2) |
| C1—N7—C8—C9 | 47.3 (2) | C18—C19—C20—C15 | 0.2 (2) |
| C1—N7—C8—C13 | −135.63 (16) | N16—C15—C20—C19 | −0.3 (2) |
| C13—C8—C9—C10 | 0.1 (2) | N14—C15—C20—C19 | −178.51 (14) |
| N7—C8—C9—C10 | 177.18 (14) | N25i—C21—C22—N23 | −0.1 (3) |
| C8—C9—C10—C11 | −0.6 (2) | C25i—C21—C22—N23 | −0.1 (3) |
| C9—C10—C11—C12 | 0.8 (2) | C21—C22—N23—C24 | 0.0 (3) |
| C9—C10—C11—N14 | 178.09 (14) | C22—N23—C24—C25 | −179.52 (15) |
| C15—N14—C11—C12 | −48.1 (2) | C22—N23—C24—C24i | −0.4 (3) |
| C15—N14—C11—C10 | 134.72 (16) | N23—C24—C25—C21i | −179.92 (15) |
| C10—C11—C12—C13 | −0.6 (2) | C24i—C24—C25—C21i | 1.0 (3) |
| N14—C11—C12—C13 | −177.76 (14) |
| H··· | ||||
| N14—H14N···N2ii | 0.90 | 2.12 | 2.9998 (17) | 166 |
| N7—H7N···N16iii | 0.90 | 2.13 | 3.0173 (18) | 167 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N14—H14 | 0.90 | 2.12 | 2.9998 (17) | 166 |
| N7—H7 | 0.90 | 2.13 | 3.0173 (18) | 167 |
Symmetry codes: (i) ; (ii) .