Literature DB >> 22091073

N,N'-Bis(2-chloro-benz-yl)-N''-(2,2,2-trichloro-acet-yl)phospho-ric triamide.

Mehrdad Pourayoubi, Hassan Fadaei, Masood Parvez.   

Abstract

The P atom in the title compound, C(16)H(15)Cl(5)N(3)O(2)P, exhibits a tetra-hedral coordination geometry and the phosphoryl and carbonyl groups are anti with respect to one another. The dihedral angle between the benzene rings is 44.90 (15)°. One of the 2-chloro-benzyl-amido fragments is disordered over two sets of sites with occupancies of 0.8823 (17) and 0.1177 (17). In the crystal, adjacent mol-ecules are linked via N-H⋯O(P) and N-H⋯O(C) hydrogen bonds into an extended chain running parallel to the a axis.

Entities:  

Year:  2011        PMID: 22091073      PMCID: PMC3213494          DOI: 10.1107/S1600536811027681

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of compounds having a C(O)NHP(O) skeleton, see: Toghraee et al. (2011 ▶). For bond lengths in related structures, see: Pourayoubi et al. (2011 ▶); Rudd et al. (1996 ▶).

Experimental

Crystal data

C16H15Cl5N3O2P M = 489.53 Triclinic, a = 9.9789 (2) Å b = 10.6058 (3) Å c = 10.8386 (3) Å α = 75.8920 (13)° β = 72.2250 (15)° γ = 69.6050 (15)° V = 1011.66 (4) Å3 Z = 2 Mo Kα radiation μ = 0.81 mm−1 T = 173 K 0.18 × 0.14 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer with APEXII CCD detector Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.867, T max = 0.909 8947 measured reflections 4638 independent reflections 4083 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.129 S = 1.05 4638 reflections 245 parameters H-atom parameters constrained Δρmax = 1.42 e Å−3 Δρmin = −0.68 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811027681/sj5176sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811027681/sj5176Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15Cl5N3O2PZ = 2
Mr = 489.53F(000) = 496
Triclinic, P1Dx = 1.607 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.9789 (2) ÅCell parameters from 4567 reflections
b = 10.6058 (3) Åθ = 1.0–27.5°
c = 10.8386 (3) ŵ = 0.81 mm1
α = 75.8920 (13)°T = 173 K
β = 72.2250 (15)°Prism, colorless
γ = 69.6050 (15)°0.18 × 0.14 × 0.12 mm
V = 1011.66 (4) Å3
Nonius KappaCCD diffractometer with APEXII CCD detector4638 independent reflections
Radiation source: fine-focus sealed tube4083 reflections with I > 2σ(I)
graphiteRint = 0.020
ω and φ scansθmax = 27.6°, θmin = 2.0°
Absorption correction: multi-scan (SORTAV; Blessing, 1997)h = −12→12
Tmin = 0.867, Tmax = 0.909k = −13→13
8947 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.043P)2 + 2.0234P] where P = (Fo2 + 2Fc2)/3
4638 reflections(Δ/σ)max < 0.001
245 parametersΔρmax = 1.42 e Å3
0 restraintsΔρmin = −0.68 e Å3
Experimental. IR (KBr, cm-1): 3371, 3061, 2875, 1692, 1448, 1257, 1224, 1076, 1043, 885, 837, 751, 675.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.58102 (9)−0.04802 (11)1.36183 (8)0.0547 (3)
Cl20.87488 (8)−0.22348 (7)1.35952 (8)0.03998 (19)
Cl30.68228 (12)−0.30242 (9)1.26210 (11)0.0590 (3)
P10.72798 (7)0.04068 (7)0.90391 (6)0.02507 (16)
O10.9079 (2)−0.0722 (2)1.1030 (2)0.0386 (5)
O20.60042 (19)0.0572 (2)0.85370 (18)0.0317 (4)
N10.6903 (2)−0.0446 (2)1.0605 (2)0.0262 (4)
H10.6044−0.06051.09250.031*
C10.7866 (3)−0.0882 (3)1.1360 (3)0.0259 (5)
C20.7338 (3)−0.1636 (3)1.2751 (3)0.0301 (5)
N20.8865 (2)−0.0463 (3)0.8250 (2)0.0352 (6)
H20.9630−0.01510.80310.042*0.8823 (17)
C30.9024 (3)−0.1740 (3)0.7909 (3)0.0335 (7)0.8823 (17)
H3A0.8074−0.17130.77790.040*0.8823 (17)
H3B0.9247−0.24700.86490.040*0.8823 (17)
C41.0236 (2)−0.2094 (2)0.66667 (18)0.0269 (7)0.8823 (17)
C51.0496 (2)−0.3322 (2)0.6261 (2)0.0362 (7)0.8823 (17)
C61.1578 (3)−0.3675 (2)0.5135 (2)0.0476 (10)0.8823 (17)
H61.1755−0.45150.48580.057*0.8823 (17)
C71.2401 (3)−0.2800 (3)0.4415 (2)0.0501 (11)0.8823 (17)
H71.3141−0.30410.36450.060*0.8823 (17)
C81.2141 (2)−0.1572 (2)0.4820 (2)0.0467 (9)0.8823 (17)
H81.2704−0.09730.43280.056*0.8823 (17)
C91.1059 (2)−0.12185 (18)0.5946 (2)0.0342 (7)0.8823 (17)
H91.0882−0.03790.62230.041*0.8823 (17)
Cl40.94994 (12)−0.44175 (10)0.71412 (13)0.0605 (3)0.8823 (17)
H2'0.9162−0.10960.88860.042*0.1177 (17)
C3'0.993 (3)−0.079 (2)0.730 (2)0.0335 (7)0.1177 (17)
H3'11.0801−0.09970.76450.040*0.1177 (17)
H3'20.98920.00790.66860.040*0.1177 (17)
C4'1.036 (2)−0.1806 (18)0.6432 (18)0.0269 (7)0.1177 (17)
C5'1.148 (2)−0.1813 (19)0.529 (2)0.0362 (7)0.1177 (17)
C6'1.199 (2)−0.289 (2)0.4586 (18)0.0476 (10)0.1177 (17)
H6'1.2753−0.28920.38080.057*0.1177 (17)
C7'1.137 (2)−0.395 (2)0.501 (2)0.0501 (11)0.1177 (17)
H7'1.1711−0.46870.45290.060*0.1177 (17)
C8'1.024 (2)−0.3946 (17)0.6152 (19)0.0467 (9)0.1177 (17)
H8'0.9819−0.46750.64450.056*0.1177 (17)
C9'0.9738 (19)−0.287 (2)0.6861 (15)0.0342 (7)0.1177 (17)
H9'0.8970−0.28670.76380.041*0.1177 (17)
Cl4'1.2278 (9)−0.0556 (8)0.4817 (10)0.0605 (3)0.1177 (17)
N30.7555 (2)0.1823 (2)0.9050 (2)0.0309 (5)
H30.84650.18490.88890.037*
C100.6334 (3)0.3062 (3)0.9322 (3)0.0356 (6)
H10A0.54780.30270.90650.043*
H10B0.66320.38600.87730.043*
C110.5868 (3)0.3256 (3)1.0740 (3)0.0322 (6)
C120.6657 (4)0.3724 (3)1.1291 (3)0.0409 (7)
C130.6224 (5)0.3866 (4)1.2614 (4)0.0529 (9)
H130.67800.41881.29710.064*
C140.4988 (5)0.3535 (4)1.3393 (4)0.0584 (10)
H140.46890.36241.42960.070*
C150.4189 (4)0.3081 (4)1.2880 (4)0.0559 (9)
H150.33310.28561.34240.067*
C160.4620 (4)0.2945 (3)1.1571 (3)0.0437 (7)
H160.40470.26291.12280.052*
Cl50.82320 (12)0.41376 (12)1.03083 (12)0.0672 (3)
U11U22U33U12U13U23
Cl10.0395 (4)0.0749 (6)0.0293 (4)0.0045 (4)−0.0024 (3)−0.0105 (4)
Cl20.0424 (4)0.0350 (4)0.0463 (4)−0.0098 (3)−0.0260 (3)0.0039 (3)
Cl30.0763 (6)0.0416 (5)0.0793 (7)−0.0360 (4)−0.0472 (5)0.0180 (4)
P10.0178 (3)0.0380 (4)0.0204 (3)−0.0100 (3)−0.0013 (2)−0.0080 (3)
O10.0246 (10)0.0590 (14)0.0358 (11)−0.0193 (9)−0.0083 (8)−0.0023 (10)
O20.0199 (9)0.0517 (12)0.0251 (9)−0.0139 (8)−0.0036 (7)−0.0063 (8)
N10.0195 (10)0.0363 (12)0.0235 (10)−0.0118 (9)−0.0025 (8)−0.0042 (9)
C10.0224 (12)0.0282 (13)0.0269 (13)−0.0077 (10)−0.0050 (10)−0.0049 (10)
C20.0302 (13)0.0271 (13)0.0333 (14)−0.0094 (10)−0.0119 (11)0.0013 (10)
N20.0201 (10)0.0533 (15)0.0354 (13)−0.0106 (10)0.0012 (9)−0.0232 (11)
C30.0285 (15)0.0314 (16)0.0339 (16)−0.0083 (12)0.0032 (12)−0.0078 (13)
C40.0245 (13)0.0277 (16)0.0247 (15)−0.0021 (12)−0.0062 (11)−0.0053 (12)
C50.0303 (16)0.0358 (17)0.0444 (19)−0.0038 (13)−0.0142 (14)−0.0117 (14)
C60.039 (2)0.052 (2)0.050 (2)0.0103 (17)−0.0210 (17)−0.0285 (19)
C70.040 (2)0.068 (3)0.0244 (17)0.0100 (19)−0.0069 (15)−0.0146 (17)
C80.0312 (17)0.061 (2)0.0269 (17)0.0004 (16)−0.0008 (14)0.0019 (16)
C90.0285 (15)0.0358 (17)0.0307 (16)−0.0046 (13)−0.0026 (12)−0.0050 (13)
Cl40.0475 (5)0.0380 (5)0.0988 (9)−0.0148 (4)−0.0086 (5)−0.0240 (5)
N2'0.0201 (10)0.0533 (15)0.0354 (13)−0.0106 (10)0.0012 (9)−0.0232 (11)
C3'0.0285 (15)0.0314 (16)0.0339 (16)−0.0083 (12)0.0032 (12)−0.0078 (13)
C4'0.0245 (13)0.0277 (16)0.0247 (15)−0.0021 (12)−0.0062 (11)−0.0053 (12)
C5'0.0303 (16)0.0358 (17)0.0444 (19)−0.0038 (13)−0.0142 (14)−0.0117 (14)
C6'0.039 (2)0.052 (2)0.050 (2)0.0103 (17)−0.0210 (17)−0.0285 (19)
C7'0.040 (2)0.068 (3)0.0244 (17)0.0100 (19)−0.0069 (15)−0.0146 (17)
C8'0.0312 (17)0.061 (2)0.0269 (17)0.0004 (16)−0.0008 (14)0.0019 (16)
C9'0.0285 (15)0.0358 (17)0.0307 (16)−0.0046 (13)−0.0026 (12)−0.0050 (13)
Cl4'0.0475 (5)0.0380 (5)0.0988 (9)−0.0148 (4)−0.0086 (5)−0.0240 (5)
N30.0251 (11)0.0398 (13)0.0293 (12)−0.0138 (10)−0.0051 (9)−0.0035 (10)
C100.0399 (15)0.0336 (15)0.0342 (15)−0.0088 (12)−0.0169 (12)0.0002 (11)
C110.0369 (14)0.0232 (13)0.0353 (15)−0.0020 (11)−0.0174 (12)−0.0017 (11)
C120.0452 (17)0.0320 (15)0.0484 (18)−0.0072 (13)−0.0219 (14)−0.0041 (13)
C130.073 (3)0.0379 (18)0.054 (2)0.0001 (16)−0.038 (2)−0.0127 (15)
C140.063 (2)0.050 (2)0.0396 (19)0.0104 (18)−0.0097 (17)−0.0114 (16)
C150.048 (2)0.053 (2)0.048 (2)−0.0016 (16)−0.0025 (16)−0.0043 (17)
C160.0402 (17)0.0381 (17)0.0478 (19)−0.0070 (13)−0.0101 (14)−0.0053 (14)
Cl50.0632 (6)0.0785 (7)0.0774 (7)−0.0424 (5)−0.0238 (5)−0.0030 (5)
Cl1—C21.759 (3)C3'—H3'20.9900
Cl2—C21.761 (3)C4'—C5'1.3900
Cl3—C21.768 (3)C4'—C9'1.3900
P1—O21.4724 (18)C5'—C6'1.3900
P1—N21.621 (2)C5'—Cl4'1.682 (17)
P1—N31.622 (2)C6'—C7'1.3900
P1—N11.715 (2)C6'—H6'0.9500
O1—C11.212 (3)C7'—C8'1.3900
N1—C11.339 (3)C7'—H7'0.9500
N1—H10.8800C8'—C9'1.3900
C1—C21.553 (4)C8'—H8'0.9500
N2—C31.434 (4)C9'—H9'0.9500
N2—H20.8800N3—C101.467 (4)
C3—C41.534 (3)N3—H30.8800
C3—H3A0.9900C10—C111.507 (4)
C3—H3B0.9900C10—H10A0.9900
C4—C51.3900C10—H10B0.9900
C4—C91.3900C11—C121.388 (4)
C5—C61.3900C11—C161.389 (4)
C5—Cl41.713 (2)C12—C131.395 (5)
C6—C71.3900C12—Cl51.740 (4)
C6—H60.9500C13—C141.371 (6)
C7—C81.3900C13—H130.9500
C7—H70.9500C14—C151.359 (6)
C8—C91.3900C14—H140.9500
C8—H80.9500C15—C161.380 (5)
C9—H90.9500C15—H150.9500
C3'—C4'1.47 (3)C16—H160.9500
C3'—H3'10.9900
O2—P1—N2116.10 (12)H3'1—C3'—H3'2105.4
O2—P1—N3114.51 (12)C5'—C4'—C9'120.0
N2—P1—N3103.26 (13)C5'—C4'—C3'121.6 (16)
O2—P1—N1104.46 (11)C9'—C4'—C3'118.0 (16)
N2—P1—N1108.13 (13)C4'—C5'—C6'120.0
N3—P1—N1110.31 (11)C4'—C5'—Cl4'119.8 (12)
C1—N1—P1122.56 (18)C6'—C5'—Cl4'120.1 (12)
C1—N1—H1118.7C5'—C6'—C7'120.0
P1—N1—H1118.7C5'—C6'—H6'120.0
O1—C1—N1124.8 (2)C7'—C6'—H6'120.0
O1—C1—C2119.8 (2)C8'—C7'—C6'120.0
N1—C1—C2115.5 (2)C8'—C7'—H7'120.0
C1—C2—Cl1108.21 (18)C6'—C7'—H7'120.0
C1—C2—Cl2110.50 (18)C7'—C8'—C9'120.0
Cl1—C2—Cl2109.24 (16)C7'—C8'—H8'120.0
C1—C2—Cl3109.63 (19)C9'—C8'—H8'120.0
Cl1—C2—Cl3109.77 (15)C8'—C9'—C4'120.0
Cl2—C2—Cl3109.47 (15)C8'—C9'—H9'120.0
C3—N2—P1120.0 (2)C4'—C9'—H9'120.0
C3—N2—H2120.0C10—N3—P1122.06 (19)
P1—N2—H2120.0C10—N3—H3119.0
N2—C3—C4113.7 (2)P1—N3—H3119.0
N2—C3—H3A108.8N3—C10—C11113.5 (2)
C4—C3—H3A108.8N3—C10—H10A108.9
N2—C3—H3B108.8C11—C10—H10A108.9
C4—C3—H3B108.8N3—C10—H10B108.9
H3A—C3—H3B107.7C11—C10—H10B108.9
C5—C4—C9120.0H10A—C10—H10B107.7
C5—C4—C3118.28 (18)C12—C11—C16116.5 (3)
C9—C4—C3121.71 (18)C12—C11—C10122.8 (3)
C4—C5—C6120.0C16—C11—C10120.7 (3)
C4—C5—Cl4120.65 (14)C11—C12—C13121.7 (3)
C6—C5—Cl4119.35 (14)C11—C12—Cl5119.1 (3)
C7—C6—C5120.0C13—C12—Cl5119.1 (3)
C7—C6—H6120.0C14—C13—C12119.3 (3)
C5—C6—H6120.0C14—C13—H13120.3
C6—C7—C8120.0C12—C13—H13120.3
C6—C7—H7120.0C15—C14—C13120.3 (4)
C8—C7—H7120.0C15—C14—H14119.9
C9—C8—C7120.0C13—C14—H14119.9
C9—C8—H8120.0C14—C15—C16120.1 (4)
C7—C8—H8120.0C14—C15—H15119.9
C8—C9—C4120.0C16—C15—H15119.9
C8—C9—H9120.0C15—C16—C11121.9 (3)
C4—C9—H9120.0C15—C16—H16119.0
C4'—C3'—H3'1103.9C11—C16—H16119.0
C4'—C3'—H3'2103.9
O2—P1—N1—C1174.8 (2)C9'—C4'—C5'—C6'0.0
N2—P1—N1—C150.6 (2)C3'—C4'—C5'—C6'172 (2)
N3—P1—N1—C1−61.6 (2)C9'—C4'—C5'—Cl4'−177.3 (15)
P1—N1—C1—O10.2 (4)C3'—C4'—C5'—Cl4'−5(2)
P1—N1—C1—C2−179.98 (18)C4'—C5'—C6'—C7'0.0
O1—C1—C2—Cl1116.0 (3)Cl4'—C5'—C6'—C7'177.2 (16)
N1—C1—C2—Cl1−63.9 (3)C5'—C6'—C7'—C8'0.0
O1—C1—C2—Cl2−3.6 (3)C6'—C7'—C8'—C9'0.0
N1—C1—C2—Cl2176.56 (19)C7'—C8'—C9'—C4'0.0
O1—C1—C2—Cl3−124.3 (2)C5'—C4'—C9'—C8'0.0
N1—C1—C2—Cl355.8 (3)C3'—C4'—C9'—C8'−172 (2)
O2—P1—N2—C3−47.0 (3)O2—P1—N3—C1034.9 (2)
N3—P1—N2—C3−173.2 (2)N2—P1—N3—C10162.0 (2)
N1—P1—N2—C369.9 (3)N1—P1—N3—C10−82.6 (2)
P1—N2—C3—C4151.5 (2)P1—N3—C10—C1194.5 (3)
N2—C3—C4—C5179.0 (2)N3—C10—C11—C1277.3 (3)
N2—C3—C4—C9−1.5 (4)N3—C10—C11—C16−101.5 (3)
C9—C4—C5—C60.0C16—C11—C12—C130.4 (4)
C3—C4—C5—C6179.5 (2)C10—C11—C12—C13−178.5 (3)
C9—C4—C5—Cl4179.67 (18)C16—C11—C12—Cl5−179.9 (2)
C3—C4—C5—Cl4−0.8 (2)C10—C11—C12—Cl51.2 (4)
C4—C5—C6—C70.0C11—C12—C13—C140.0 (5)
Cl4—C5—C6—C7−179.67 (18)Cl5—C12—C13—C14−179.7 (3)
C5—C6—C7—C80.0C12—C13—C14—C15−0.3 (5)
C6—C7—C8—C90.0C13—C14—C15—C160.2 (6)
C7—C8—C9—C40.0C14—C15—C16—C110.2 (5)
C5—C4—C9—C80.0C12—C11—C16—C15−0.5 (5)
C3—C4—C9—C8−179.5 (3)C10—C11—C16—C15178.4 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.881.942.804 (3)168.
N2—H2···O1ii0.882.383.106 (3)141.
N2'—H2'···O10.882.423.025 (3)126.
N3—H3···O1ii0.882.343.129 (3)149.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.881.942.804 (3)168
N2—H2⋯O1ii0.882.383.106 (3)141
N2′—H2′⋯O10.882.423.025 (3)126
N3—H3⋯O1ii0.882.343.129 (3)149

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Anahid Saneei; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

  2 in total
  3 in total

1.  N,N'-Bis(2-methyl-phen-yl)-N''-(2,2,2-trichloro-acet-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Mojtaba Keikha; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

2.  N,N'-Dicyclo-hexyl-N''-(3-fluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Samad Shoghpour; Giuseppe Bruno; Hadi Amiri Rudbari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22

3.  N,N'-Dibenzyl-N,N'-dimethyl-N''-(p-tol-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Behrouz Elahi; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.