Literature DB >> 22220038

2-Amino-6-[(2,6-dichloro-phen-yl)imino]-3-oxocyclo-hexa-1,4-dienecarbaldehyde.

Cláudia M B Neves, José A Fernandes, Mário M Q Simões, M Graça P M S Neves, José A S Cavaleiro, Filipe A Almeida Paz.   

Abstract

The title compound, C(13)H(8)Cl(2)N(2)O(2), was obtained by the oxidation of diclofenac {systematic name: 2-[2-(2,6-dichloro-phenyl-amino)-phen-yl]acetic acid}, an anti-inflammatory drug, with hydrogen peroxide catalysed by chlorido[5,10,15,20-tetra-kis-(2,6-dichloro-phen-yl)porphyrinato]manganese(III), using ammonium acetate as co-catalyst. The asymmetric unit contains two crystallographically independent mol-ecules of the title compound (Z' = 2). The close packing of individual mol-ecules is mediated by a series of strong and rather directional N-H⋯Cl and N-H⋯O hydrogen bonds, plus weak π-π [distance between the individual double bonds of symmetry-related imino-quinone rings = 3.7604 (13) Å] and Cl⋯O inter-actions [3.0287 (18) Å].

Entities:  

Year:  2011        PMID: 22220038      PMCID: PMC3247420          DOI: 10.1107/S1600536811042619

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to diclofenac oxidation reactions using metalloporphyrins as catalysts, see: Othman et al. (2000 ▶). For oxidation of other drugs and other organic compounds by hydrogen peroxide catalysed by metalloporphyrins, see: Othman et al. (2000 ▶); Bernadou & Meunier (2004 ▶); Mansuy (2007 ▶); Neves et al. (2011 ▶); Simões et al. (2009 ▶); Rebelo et al. (2004a ▶,b ▶, 2005 ▶). For crystallographic studies from our research group of compounds with biological activity, see: Fernandes et al. (2010 ▶, 2011 ▶); Loughzail et al. (2011 ▶). For a description of the graph-set notation, see: Grell et al. (1999 ▶).

Experimental

Crystal data

C13H8Cl2N2O2 M = 295.11 Monoclinic, a = 17.1738 (14) Å b = 10.5718 (8) Å c = 14.1457 (11) Å β = 101.192 (5)° V = 2519.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.51 mm−1 T = 150 K 0.07 × 0.04 × 0.01 mm

Data collection

Bruker X8 KappaCCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.965, T max = 0.995 24324 measured reflections 4600 independent reflections 3466 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.085 S = 1.02 4600 reflections 355 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2005 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811042619/tk2799sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042619/tk2799Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811042619/tk2799Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H8Cl2N2O2F(000) = 1200
Mr = 295.11Dx = 1.556 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5810 reflections
a = 17.1738 (14) Åθ = 2.4–25.3°
b = 10.5718 (8) ŵ = 0.51 mm1
c = 14.1457 (11) ÅT = 150 K
β = 101.192 (5)°Plate, red
V = 2519.4 (3) Å30.07 × 0.04 × 0.01 mm
Z = 8
Bruker X8 KappaCCD APEXII diffractometer4600 independent reflections
Radiation source: fine-focus sealed tube3466 reflections with I > 2σ(I)
graphiteRint = 0.040
ω and φ scansθmax = 25.4°, θmin = 3.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −20→20
Tmin = 0.965, Tmax = 0.995k = −12→11
24324 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0396P)2 + 1.1952P] where P = (Fo2 + 2Fc2)/3
4600 reflections(Δ/σ)max = 0.001
355 parametersΔρmax = 0.24 e Å3
6 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.49916 (4)0.47039 (5)0.65986 (4)0.03327 (15)
Cl20.26299 (4)0.18196 (7)0.74680 (4)0.04150 (17)
Cl3−0.05691 (3)0.62367 (6)0.53847 (4)0.03368 (16)
Cl40.12169 (4)0.98217 (6)0.40871 (5)0.04362 (18)
O10.58372 (8)0.22644 (14)1.02574 (10)0.0271 (3)
O20.36779 (9)0.51109 (15)1.11813 (10)0.0308 (4)
O30.13914 (10)0.96716 (17)0.83068 (11)0.0381 (4)
O40.36096 (9)0.70522 (15)0.73428 (10)0.0317 (4)
N10.42445 (10)0.31116 (17)0.78706 (12)0.0254 (4)
N20.49446 (10)0.36348 (17)1.12812 (12)0.0234 (4)
H2X0.4811 (12)0.396 (2)1.1829 (11)0.035*
H2Y0.5399 (9)0.3149 (19)1.1359 (14)0.035*
N30.06269 (10)0.83177 (18)0.56257 (12)0.0282 (4)
N40.27682 (11)0.84936 (19)0.83330 (12)0.0294 (4)
H4X0.3282 (7)0.826 (2)0.8623 (15)0.044*
H4Y0.2502 (11)0.900 (2)0.8693 (14)0.044*
C10.37540 (13)0.3337 (2)0.69673 (14)0.0246 (5)
C20.40534 (13)0.4033 (2)0.62735 (15)0.0264 (5)
C30.36328 (15)0.4175 (2)0.53380 (15)0.0324 (6)
H30.38470.46570.48830.039*
C40.28988 (15)0.3606 (2)0.50764 (15)0.0351 (6)
H40.26040.37070.44390.042*
C50.25886 (14)0.2893 (2)0.57318 (16)0.0340 (6)
H50.20860.24960.55470.041*
C60.30200 (13)0.2760 (2)0.66665 (15)0.0293 (5)
C70.41077 (12)0.36167 (19)0.86545 (14)0.0208 (4)
C80.46514 (12)0.33341 (19)0.95584 (14)0.0189 (4)
C90.45032 (12)0.38251 (19)1.04179 (14)0.0205 (4)
C100.37993 (12)0.4683 (2)1.04199 (15)0.0234 (5)
C110.33030 (13)0.4983 (2)0.94897 (15)0.0266 (5)
H110.28690.55470.94640.032*
C120.34440 (12)0.4484 (2)0.86732 (15)0.0241 (5)
H120.31030.46990.80830.029*
C130.53477 (12)0.25818 (19)0.95380 (15)0.0223 (5)
H130.54360.23110.89270.027*
C140.03131 (12)0.7975 (2)0.46603 (14)0.0260 (5)
C15−0.02731 (13)0.7046 (2)0.44466 (14)0.0273 (5)
C16−0.06283 (14)0.6751 (2)0.35062 (15)0.0312 (5)
H16−0.10210.61070.33810.037*
C17−0.04074 (14)0.7399 (2)0.27537 (15)0.0340 (6)
H17−0.06510.72030.21090.041*
C180.01639 (14)0.8329 (2)0.29324 (15)0.0322 (6)
H180.03170.87720.24130.039*
C190.05143 (13)0.8613 (2)0.38746 (16)0.0295 (5)
C200.13475 (12)0.8026 (2)0.60230 (14)0.0228 (5)
C210.16673 (12)0.8469 (2)0.69960 (14)0.0224 (5)
C220.24313 (12)0.8152 (2)0.74440 (14)0.0228 (5)
C230.29463 (13)0.7359 (2)0.69351 (15)0.0253 (5)
C240.26042 (14)0.6948 (2)0.59531 (15)0.0317 (5)
H240.29190.64620.56050.038*
C250.18613 (13)0.7242 (2)0.55375 (15)0.0286 (5)
H250.16560.69360.49070.034*
C260.11859 (13)0.9265 (2)0.74825 (16)0.0299 (5)
H260.06730.94900.71400.036*
U11U22U33U12U13U23
Cl10.0426 (3)0.0302 (3)0.0295 (3)0.0019 (3)0.0133 (3)−0.0011 (2)
Cl20.0421 (4)0.0542 (4)0.0276 (3)−0.0097 (3)0.0050 (3)0.0044 (3)
Cl30.0358 (3)0.0457 (4)0.0196 (3)−0.0011 (3)0.0053 (2)0.0034 (2)
Cl40.0342 (3)0.0497 (4)0.0439 (4)−0.0070 (3)−0.0002 (3)0.0110 (3)
O10.0270 (8)0.0292 (8)0.0224 (8)0.0023 (7)−0.0018 (7)0.0026 (7)
O20.0319 (9)0.0377 (9)0.0247 (8)0.0008 (7)0.0101 (7)−0.0064 (7)
O30.0365 (9)0.0512 (11)0.0256 (8)0.0079 (8)0.0039 (7)−0.0143 (8)
O40.0248 (8)0.0420 (10)0.0261 (8)0.0089 (7)−0.0003 (7)0.0023 (7)
N10.0298 (10)0.0297 (10)0.0165 (9)0.0040 (8)0.0036 (8)0.0028 (8)
N20.0255 (10)0.0270 (10)0.0174 (9)−0.0026 (8)0.0036 (8)−0.0011 (8)
N30.0258 (10)0.0383 (11)0.0189 (9)0.0050 (9)0.0008 (8)−0.0034 (8)
N40.0281 (10)0.0381 (12)0.0190 (9)0.0055 (9)−0.0028 (8)−0.0049 (8)
C10.0306 (12)0.0250 (12)0.0173 (10)0.0116 (10)0.0023 (9)0.0003 (9)
C20.0377 (13)0.0222 (12)0.0207 (10)0.0101 (10)0.0087 (9)−0.0006 (9)
C30.0524 (16)0.0274 (13)0.0182 (11)0.0140 (12)0.0093 (10)0.0022 (10)
C40.0501 (16)0.0367 (14)0.0155 (10)0.0157 (12)−0.0014 (10)−0.0010 (10)
C50.0338 (13)0.0406 (14)0.0250 (12)0.0088 (11)−0.0007 (10)−0.0064 (11)
C60.0341 (13)0.0324 (13)0.0209 (11)0.0082 (11)0.0038 (10)0.0028 (10)
C70.0212 (11)0.0206 (11)0.0205 (10)−0.0022 (9)0.0040 (9)0.0032 (9)
C80.0204 (10)0.0177 (10)0.0182 (10)−0.0027 (8)0.0027 (8)0.0023 (8)
C90.0209 (10)0.0197 (11)0.0206 (10)−0.0065 (9)0.0032 (9)0.0026 (9)
C100.0230 (11)0.0233 (11)0.0248 (11)−0.0064 (9)0.0067 (9)−0.0017 (9)
C110.0230 (11)0.0273 (12)0.0288 (11)0.0018 (10)0.0033 (9)0.0004 (10)
C120.0246 (11)0.0236 (11)0.0224 (11)0.0023 (9)0.0002 (9)0.0019 (9)
C130.0261 (11)0.0194 (11)0.0212 (10)−0.0030 (9)0.0041 (9)0.0000 (9)
C140.0220 (11)0.0367 (13)0.0186 (10)0.0096 (10)0.0018 (9)−0.0012 (10)
C150.0266 (12)0.0361 (13)0.0188 (10)0.0048 (10)0.0036 (9)0.0015 (10)
C160.0308 (13)0.0394 (14)0.0221 (11)0.0013 (11)0.0016 (10)−0.0003 (10)
C170.0362 (13)0.0468 (15)0.0164 (10)0.0046 (12)−0.0011 (10)−0.0023 (10)
C180.0332 (13)0.0421 (14)0.0210 (11)0.0095 (11)0.0046 (10)0.0074 (10)
C190.0220 (11)0.0357 (13)0.0298 (12)0.0043 (10)0.0029 (9)0.0028 (10)
C200.0233 (11)0.0257 (12)0.0193 (10)0.0016 (9)0.0035 (9)0.0024 (9)
C210.0239 (11)0.0247 (12)0.0189 (10)0.0009 (9)0.0046 (9)−0.0011 (9)
C220.0229 (11)0.0256 (11)0.0194 (10)−0.0007 (9)0.0031 (9)0.0008 (9)
C230.0245 (12)0.0289 (12)0.0219 (10)0.0032 (10)0.0029 (9)0.0029 (9)
C240.0323 (13)0.0386 (14)0.0234 (11)0.0126 (11)0.0032 (10)−0.0069 (10)
C250.0321 (12)0.0335 (13)0.0188 (10)0.0060 (10)0.0015 (9)−0.0054 (10)
C260.0245 (12)0.0380 (14)0.0265 (12)0.0036 (10)0.0030 (9)−0.0023 (11)
Cl1—C21.738 (2)C7—C121.467 (3)
Cl2—C61.737 (2)C8—C91.390 (3)
Cl3—C151.736 (2)C8—C131.441 (3)
Cl4—C191.743 (2)C9—C101.512 (3)
O1—C131.234 (2)C10—C111.457 (3)
O2—C101.223 (2)C11—C121.334 (3)
O3—C261.229 (3)C11—H110.9500
O4—C231.217 (2)C12—H120.9500
N1—C71.293 (3)C13—H130.9500
N1—C11.408 (3)C14—C151.397 (3)
N2—C91.322 (2)C14—C191.400 (3)
N2—H2X0.917 (9)C15—C161.387 (3)
N2—H2Y0.922 (9)C16—C171.380 (3)
N3—C201.293 (3)C16—H160.9500
N3—C141.414 (3)C17—C181.377 (3)
N4—C221.328 (3)C17—H170.9500
N4—H4X0.931 (9)C18—C191.385 (3)
N4—H4Y0.921 (9)C18—H180.9500
C1—C61.390 (3)C20—C211.456 (3)
C1—C21.402 (3)C20—C251.474 (3)
C2—C31.387 (3)C21—C221.383 (3)
C3—C41.381 (3)C21—C261.444 (3)
C3—H30.9500C22—C231.501 (3)
C4—C51.380 (3)C23—C241.465 (3)
C4—H40.9500C24—C251.334 (3)
C5—C61.392 (3)C24—H240.9500
C5—H50.9500C25—H250.9500
C7—C81.460 (3)C26—H260.9500
C7—N1—C1122.17 (18)C7—C12—H12118.8
C9—N2—H2X122.1 (13)O1—C13—C8124.65 (19)
C9—N2—H2Y121.0 (13)O1—C13—H13117.7
H2X—N2—H2Y116.9 (14)C8—C13—H13117.7
C20—N3—C14120.77 (18)C15—C14—C19116.48 (19)
C22—N4—H4X123.3 (13)C15—C14—N3120.83 (19)
C22—N4—H4Y120.7 (13)C19—C14—N3122.5 (2)
H4X—N4—H4Y116.0 (14)C16—C15—C14122.0 (2)
C6—C1—C2116.73 (19)C16—C15—Cl3118.86 (18)
C6—C1—N1123.4 (2)C14—C15—Cl3119.13 (16)
C2—C1—N1119.2 (2)C17—C16—C15119.5 (2)
C3—C2—C1122.0 (2)C17—C16—H16120.2
C3—C2—Cl1119.52 (18)C15—C16—H16120.2
C1—C2—Cl1118.43 (16)C18—C17—C16120.4 (2)
C4—C3—C2119.2 (2)C18—C17—H17119.8
C4—C3—H3120.4C16—C17—H17119.8
C2—C3—H3120.4C17—C18—C19119.5 (2)
C5—C4—C3120.6 (2)C17—C18—H18120.2
C5—C4—H4119.7C19—C18—H18120.2
C3—C4—H4119.7C18—C19—C14122.1 (2)
C4—C5—C6119.3 (2)C18—C19—Cl4118.83 (18)
C4—C5—H5120.3C14—C19—Cl4119.07 (17)
C6—C5—H5120.3N3—C20—C21119.18 (19)
C1—C6—C5122.1 (2)N3—C20—C25122.72 (19)
C1—C6—Cl2119.52 (16)C21—C20—C25118.09 (18)
C5—C6—Cl2118.42 (19)C22—C21—C26120.17 (19)
N1—C7—C8118.35 (18)C22—C21—C20120.36 (19)
N1—C7—C12123.02 (19)C26—C21—C20119.46 (18)
C8—C7—C12118.62 (18)N4—C22—C21124.6 (2)
C9—C8—C13121.14 (18)N4—C22—C23114.66 (18)
C9—C8—C7119.67 (18)C21—C22—C23120.70 (18)
C13—C8—C7119.16 (17)O4—C23—C24122.5 (2)
N2—C9—C8125.56 (19)O4—C23—C22120.41 (19)
N2—C9—C10113.89 (18)C24—C23—C22117.07 (18)
C8—C9—C10120.53 (18)C25—C24—C23121.5 (2)
O2—C10—C11123.0 (2)C25—C24—H24119.3
O2—C10—C9119.78 (19)C23—C24—H24119.3
C11—C10—C9117.17 (18)C24—C25—C20122.3 (2)
C12—C11—C10121.5 (2)C24—C25—H25118.9
C12—C11—H11119.2C20—C25—H25118.9
C10—C11—H11119.2O3—C26—C21124.8 (2)
C11—C12—C7122.34 (19)O3—C26—H26117.6
C11—C12—H12118.8C21—C26—H26117.6
C7—N1—C1—C6−77.3 (3)C20—N3—C14—C15110.1 (2)
C7—N1—C1—C2111.9 (2)C20—N3—C14—C19−75.8 (3)
C6—C1—C2—C31.7 (3)C19—C14—C15—C161.2 (3)
N1—C1—C2—C3173.0 (2)N3—C14—C15—C16175.7 (2)
C6—C1—C2—Cl1−176.76 (16)C19—C14—C15—Cl3−178.67 (16)
N1—C1—C2—Cl1−5.4 (3)N3—C14—C15—Cl3−4.2 (3)
C1—C2—C3—C4−0.4 (3)C14—C15—C16—C17−0.8 (3)
Cl1—C2—C3—C4177.98 (17)Cl3—C15—C16—C17179.07 (18)
C2—C3—C4—C5−0.8 (3)C15—C16—C17—C180.3 (4)
C3—C4—C5—C60.7 (3)C16—C17—C18—C19−0.2 (3)
C2—C1—C6—C5−1.8 (3)C17—C18—C19—C140.7 (3)
N1—C1—C6—C5−172.7 (2)C17—C18—C19—Cl4−178.31 (18)
C2—C1—C6—Cl2177.02 (16)C15—C14—C19—C18−1.1 (3)
N1—C1—C6—Cl26.1 (3)N3—C14—C19—C18−175.5 (2)
C4—C5—C6—C10.7 (3)C15—C14—C19—Cl4177.85 (17)
C4—C5—C6—Cl2−178.15 (17)N3—C14—C19—Cl43.5 (3)
C1—N1—C7—C8−179.69 (19)C14—N3—C20—C21175.9 (2)
C1—N1—C7—C12−1.3 (3)C14—N3—C20—C25−5.1 (3)
N1—C7—C8—C9−177.60 (19)N3—C20—C21—C22178.9 (2)
C12—C7—C8—C93.9 (3)C25—C20—C21—C22−0.2 (3)
N1—C7—C8—C134.4 (3)N3—C20—C21—C26−2.5 (3)
C12—C7—C8—C13−174.09 (18)C25—C20—C21—C26178.5 (2)
C13—C8—C9—N2−2.5 (3)C26—C21—C22—N42.5 (3)
C7—C8—C9—N2179.58 (19)C20—C21—C22—N4−178.8 (2)
C13—C8—C9—C10175.95 (18)C26—C21—C22—C23−178.1 (2)
C7—C8—C9—C10−2.0 (3)C20—C21—C22—C230.5 (3)
N2—C9—C10—O2−1.2 (3)N4—C22—C23—O41.6 (3)
C8—C9—C10—O2−179.80 (19)C21—C22—C23—O4−177.8 (2)
N2—C9—C10—C11177.42 (18)N4—C22—C23—C24179.7 (2)
C8—C9—C10—C11−1.2 (3)C21—C22—C23—C240.3 (3)
O2—C10—C11—C12−178.9 (2)O4—C23—C24—C25176.6 (2)
C9—C10—C11—C122.5 (3)C22—C23—C24—C25−1.5 (3)
C10—C11—C12—C7−0.6 (3)C23—C24—C25—C201.9 (4)
N1—C7—C12—C11178.9 (2)N3—C20—C25—C24179.9 (2)
C8—C7—C12—C11−2.7 (3)C21—C20—C25—C24−1.0 (3)
C9—C8—C13—O13.6 (3)C22—C21—C26—O3−2.6 (4)
C7—C8—C13—O1−178.44 (19)C20—C21—C26—O3178.7 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2X···Cl1i0.92 (1)2.60 (1)3.4590 (18)156.(2)
N2—H2Y···O10.92 (1)2.08 (2)2.722 (2)126.(2)
N2—H2Y···O4i0.92 (1)2.26 (2)2.933 (2)130.(2)
N4—H4X···O1i0.93 (1)2.04 (1)2.916 (2)155 (2)
N4—H4Y···O30.92 (1)2.01 (2)2.666 (3)127.(2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2X⋯Cl1i0.92 (1)2.60 (1)3.4590 (18)156 (2)
N2—H2Y⋯O10.92 (1)2.08 (2)2.722 (2)126 (2)
N2—H2Y⋯O4i0.92 (1)2.26 (2)2.933 (2)130 (2)
N4—H4X⋯O1i0.93 (1)2.04 (1)2.916 (2)155 (2)
N4—H4Y⋯O30.92 (1)2.01 (2)2.666 (3)127 (2)

Symmetry code: (i) .

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