Literature DB >> 21588628

(R)-(1-Ammonio-eth-yl)phospho-nate.

José A Fernandes, Filipe A Almeida Paz, Sérgio M F Vilela, João P C Tomé, José A S Cavaleiro, Paulo J A Ribeiro-Claro, João Rocha.   

Abstract

The title compound, C(2)H(8)NO(3)P, crystallizes in its zwitterionic form H(3)N(+)CH(CH(3))PO(O(-))(OH). In the crystal, the molecules are linked by N-H⋯O and O-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588628      PMCID: PMC3008088          DOI: 10.1107/S1600536810030308

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­bacterial activity of the title compound, see: Allen et al. (1979 ▶). For the use of the title compound as a co-crystallizing inhibitor on the X-ray structure of the alanine racemase from Bacillus anthracis, a potential anti-anthrax drug target, see: Au et al. (2008 ▶). For examples of coordination compounds of the title compound, see: Cui et al. (2006 ▶); Carraro et al. (2008 ▶). For a description of the graph-set notation for hydrogen-bonded aggregates, see: Grell et al. (1999 ▶). For previous work from our research group on the assembly of coordination polymers using phospho­nic-based mol­ecules, see: Cunha-Silva, Ananias et al. (2009 ▶); Cunha-Silva, Lima et al. (2009 ▶); Shi, Cunha-Silva et al. (2008 ▶); Shi, Trindade et al. (2008 ▶).

Experimental

Crystal data

C2H8NO3P M = 125.06 Orthorhombic, a = 4.8256 (1) Å b = 10.3928 (3) Å c = 10.4668 (3) Å V = 524.93 (2) Å3 Z = 4 Mo Kα radiation μ = 0.42 mm−1 T = 150 K 0.12 × 0.08 × 0.04 mm

Data collection

Bruker X8 Kappa CCD APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.951, T max = 0.983 7972 measured reflections 2535 independent reflections 2362 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.070 S = 1.07 2535 reflections 77 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.26 e Å−3 Absolute structure: Flack (1983 ▶), 1051 Friedel pairs Flack parameter: 0.00 (8) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT-Plus (Bruker, 2006 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030308/tk2694sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030308/tk2694Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H8NO3PF(000) = 264
Mr = 125.06Dx = 1.583 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3869 reflections
a = 4.8256 (1) Åθ = 2.8–35.9°
b = 10.3928 (3) ŵ = 0.42 mm1
c = 10.4668 (3) ÅT = 150 K
V = 524.93 (2) Å3Prism, colourless
Z = 40.12 × 0.08 × 0.04 mm
Bruker X8 Kappa CCD APEXII diffractometer2535 independent reflections
Radiation source: fine-focus sealed tube2362 reflections with I > 2σ(I)
graphiteRint = 0.027
ω and phi scansθmax = 36.3°, θmin = 3.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −7→8
Tmin = 0.951, Tmax = 0.983k = −16→17
7972 measured reflectionsl = −17→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.070w = 1/[σ2(Fo2) + (0.0415P)2] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2535 reflectionsΔρmax = 0.50 e Å3
77 parametersΔρmin = −0.26 e Å3
7 restraintsAbsolute structure: Flack (1983), 1051 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.12299 (5)0.08570 (2)0.11153 (2)0.01023 (6)
O10.15178 (17)0.13133 (7)−0.02404 (7)0.01436 (13)
O20.33072 (15)−0.02579 (7)0.14607 (8)0.01551 (14)
H40.512 (2)0.0009 (18)0.1437 (15)0.023*
O3−0.16015 (15)0.03922 (8)0.15035 (8)0.01671 (15)
N10.15332 (19)0.34471 (8)0.15951 (8)0.01264 (14)
H10.290 (2)0.3648 (15)0.0983 (11)0.019*
H20.152 (3)0.4080 (12)0.2239 (10)0.019*
H3−0.0211 (19)0.3439 (15)0.1171 (13)0.019*
C10.2286 (2)0.21731 (10)0.21766 (9)0.01326 (17)
H1A0.43520.21430.22480.016*
C20.1111 (4)0.20387 (11)0.35212 (10)0.0253 (2)
H2A0.19240.26980.40750.038*
H2B0.15570.11840.38580.038*
H2C−0.09060.21480.34950.038*
U11U22U33U12U13U23
P10.00725 (9)0.01088 (9)0.01254 (9)−0.00054 (8)−0.00037 (8)0.00118 (8)
O10.0141 (3)0.0168 (3)0.0121 (3)−0.0005 (3)−0.0003 (3)0.0012 (2)
O20.0087 (3)0.0130 (3)0.0248 (4)0.0004 (2)−0.0024 (2)0.0025 (3)
O30.0076 (3)0.0195 (3)0.0229 (3)−0.0017 (2)0.0002 (3)0.0051 (3)
N10.0126 (3)0.0122 (3)0.0132 (3)0.0000 (3)0.0000 (3)−0.0004 (3)
C10.0134 (4)0.0137 (4)0.0126 (4)−0.0001 (3)−0.0025 (3)0.0011 (3)
C20.0425 (7)0.0216 (5)0.0118 (4)0.0001 (5)0.0004 (5)0.0019 (4)
P1—O11.5025 (8)N1—H20.942 (7)
P1—O31.5051 (8)N1—H30.951 (7)
P1—O21.5742 (8)C1—C21.5238 (16)
P1—C11.8344 (10)C1—H1A1.0000
O2—H40.918 (9)C2—H2A0.9800
N1—C11.5018 (13)C2—H2B0.9800
N1—H10.943 (8)C2—H2C0.9800
O1—P1—O3116.12 (4)N1—C1—C2111.41 (9)
O1—P1—O2112.98 (4)N1—C1—P1110.17 (6)
O3—P1—O2106.25 (4)C2—C1—P1112.80 (8)
O1—P1—C1108.11 (5)N1—C1—H1A107.4
O3—P1—C1109.15 (5)C2—C1—H1A107.4
O2—P1—C1103.46 (4)P1—C1—H1A107.4
P1—O2—H4112.2 (12)C1—C2—H2A109.5
C1—N1—H1107.5 (10)C1—C2—H2B109.5
C1—N1—H2109.1 (9)H2A—C2—H2B109.5
H1—N1—H2109.6 (9)C1—C2—H2C109.5
C1—N1—H3113.3 (10)H2A—C2—H2C109.5
H1—N1—H3107.7 (9)H2B—C2—H2C109.5
H2—N1—H3109.5 (10)
O1—P1—C1—N133.30 (8)O1—P1—C1—C2158.48 (8)
O3—P1—C1—N1−93.86 (7)O3—P1—C1—C231.32 (10)
O2—P1—C1—N1153.33 (7)O2—P1—C1—C2−81.49 (9)
D—H···AD—HH···AD···AD—H···A
O2—H4···O3i0.92 (1)1.63 (1)2.5484 (10)175.(2)
N1—H1···O1ii0.94 (1)1.91 (1)2.8033 (11)157.(1)
N1—H2···O3iii0.94 (1)1.90 (1)2.8369 (12)178.(1)
N1—H3···O1iv0.95 (1)1.87 (1)2.8160 (12)171.(1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H4⋯O3i0.92 (1)1.63 (1)2.5484 (10)175 (2)
N1—H1⋯O1ii0.94 (1)1.91 (1)2.8033 (11)157 (1)
N1—H2⋯O3iii0.94 (1)1.90 (1)2.8369 (12)178 (1)
N1—H3⋯O1iv0.95 (1)1.87 (1)2.8160 (12)171 (1)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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