| Literature DB >> 21588628 |
José A Fernandes, Filipe A Almeida Paz, Sérgio M F Vilela, João P C Tomé, José A S Cavaleiro, Paulo J A Ribeiro-Claro, João Rocha.
Abstract
The title compound, C(2)H(8)NO(3)P, crystallizes in its zwitterionic form H(3)N(+)CH(CH(3))PO(O(-))(OH). In the crystal, the molecules are linked by N-H⋯O and O-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21588628 PMCID: PMC3008088 DOI: 10.1107/S1600536810030308
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C2H8NO3P | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 3869 reflections |
| θ = 2.8–35.9° | |
| µ = 0.42 mm−1 | |
| Prism, colourless | |
| 0.12 × 0.08 × 0.04 mm |
| Bruker X8 Kappa CCD APEXII diffractometer | 2535 independent reflections |
| Radiation source: fine-focus sealed tube | 2362 reflections with |
| graphite | |
| ω and phi scans | θmax = 36.3°, θmin = 3.9° |
| Absorption correction: multi-scan ( | |
| 7972 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2535 reflections | Δρmax = 0.50 e Å−3 |
| 77 parameters | Δρmin = −0.26 e Å−3 |
| 7 restraints | Absolute structure: Flack (1983), 1051 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.00 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.12299 (5) | 0.08570 (2) | 0.11153 (2) | 0.01023 (6) | |
| O1 | 0.15178 (17) | 0.13133 (7) | −0.02404 (7) | 0.01436 (13) | |
| O2 | 0.33072 (15) | −0.02579 (7) | 0.14607 (8) | 0.01551 (14) | |
| H4 | 0.512 (2) | 0.0009 (18) | 0.1437 (15) | 0.023* | |
| O3 | −0.16015 (15) | 0.03922 (8) | 0.15035 (8) | 0.01671 (15) | |
| N1 | 0.15332 (19) | 0.34471 (8) | 0.15951 (8) | 0.01264 (14) | |
| H1 | 0.290 (2) | 0.3648 (15) | 0.0983 (11) | 0.019* | |
| H2 | 0.152 (3) | 0.4080 (12) | 0.2239 (10) | 0.019* | |
| H3 | −0.0211 (19) | 0.3439 (15) | 0.1171 (13) | 0.019* | |
| C1 | 0.2286 (2) | 0.21731 (10) | 0.21766 (9) | 0.01326 (17) | |
| H1A | 0.4352 | 0.2143 | 0.2248 | 0.016* | |
| C2 | 0.1111 (4) | 0.20387 (11) | 0.35212 (10) | 0.0253 (2) | |
| H2A | 0.1924 | 0.2698 | 0.4075 | 0.038* | |
| H2B | 0.1557 | 0.1184 | 0.3858 | 0.038* | |
| H2C | −0.0906 | 0.2148 | 0.3495 | 0.038* |
| P1 | 0.00725 (9) | 0.01088 (9) | 0.01254 (9) | −0.00054 (8) | −0.00037 (8) | 0.00118 (8) |
| O1 | 0.0141 (3) | 0.0168 (3) | 0.0121 (3) | −0.0005 (3) | −0.0003 (3) | 0.0012 (2) |
| O2 | 0.0087 (3) | 0.0130 (3) | 0.0248 (4) | 0.0004 (2) | −0.0024 (2) | 0.0025 (3) |
| O3 | 0.0076 (3) | 0.0195 (3) | 0.0229 (3) | −0.0017 (2) | 0.0002 (3) | 0.0051 (3) |
| N1 | 0.0126 (3) | 0.0122 (3) | 0.0132 (3) | 0.0000 (3) | 0.0000 (3) | −0.0004 (3) |
| C1 | 0.0134 (4) | 0.0137 (4) | 0.0126 (4) | −0.0001 (3) | −0.0025 (3) | 0.0011 (3) |
| C2 | 0.0425 (7) | 0.0216 (5) | 0.0118 (4) | 0.0001 (5) | 0.0004 (5) | 0.0019 (4) |
| P1—O1 | 1.5025 (8) | N1—H2 | 0.942 (7) |
| P1—O3 | 1.5051 (8) | N1—H3 | 0.951 (7) |
| P1—O2 | 1.5742 (8) | C1—C2 | 1.5238 (16) |
| P1—C1 | 1.8344 (10) | C1—H1A | 1.0000 |
| O2—H4 | 0.918 (9) | C2—H2A | 0.9800 |
| N1—C1 | 1.5018 (13) | C2—H2B | 0.9800 |
| N1—H1 | 0.943 (8) | C2—H2C | 0.9800 |
| O1—P1—O3 | 116.12 (4) | N1—C1—C2 | 111.41 (9) |
| O1—P1—O2 | 112.98 (4) | N1—C1—P1 | 110.17 (6) |
| O3—P1—O2 | 106.25 (4) | C2—C1—P1 | 112.80 (8) |
| O1—P1—C1 | 108.11 (5) | N1—C1—H1A | 107.4 |
| O3—P1—C1 | 109.15 (5) | C2—C1—H1A | 107.4 |
| O2—P1—C1 | 103.46 (4) | P1—C1—H1A | 107.4 |
| P1—O2—H4 | 112.2 (12) | C1—C2—H2A | 109.5 |
| C1—N1—H1 | 107.5 (10) | C1—C2—H2B | 109.5 |
| C1—N1—H2 | 109.1 (9) | H2A—C2—H2B | 109.5 |
| H1—N1—H2 | 109.6 (9) | C1—C2—H2C | 109.5 |
| C1—N1—H3 | 113.3 (10) | H2A—C2—H2C | 109.5 |
| H1—N1—H3 | 107.7 (9) | H2B—C2—H2C | 109.5 |
| H2—N1—H3 | 109.5 (10) | ||
| O1—P1—C1—N1 | 33.30 (8) | O1—P1—C1—C2 | 158.48 (8) |
| O3—P1—C1—N1 | −93.86 (7) | O3—P1—C1—C2 | 31.32 (10) |
| O2—P1—C1—N1 | 153.33 (7) | O2—P1—C1—C2 | −81.49 (9) |
| H··· | ||||
| O2—H4···O3i | 0.92 (1) | 1.63 (1) | 2.5484 (10) | 175.(2) |
| N1—H1···O1ii | 0.94 (1) | 1.91 (1) | 2.8033 (11) | 157.(1) |
| N1—H2···O3iii | 0.94 (1) | 1.90 (1) | 2.8369 (12) | 178.(1) |
| N1—H3···O1iv | 0.95 (1) | 1.87 (1) | 2.8160 (12) | 171.(1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H4⋯O3i | 0.92 (1) | 1.63 (1) | 2.5484 (10) | 175 (2) |
| N1—H1⋯O1ii | 0.94 (1) | 1.91 (1) | 2.8033 (11) | 157 (1) |
| N1—H2⋯O3iii | 0.94 (1) | 1.90 (1) | 2.8369 (12) | 178 (1) |
| N1—H3⋯O1iv | 0.95 (1) | 1.87 (1) | 2.8160 (12) | 171 (1) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .