Literature DB >> 22220021

10α-Hy-droxy-4,9-dimethyl-13-(pipyridin-1-ylmethyl)-3,8,15-trioxatetra-cyclo-[10.3.0.0.0]tetra-decan-14-one.

Mohamed Moumou, Ahmed Benharref, Abdelghani Oudahmane, Ahmed Elhakmaoui, Moha Berraho.   

Abstract

The title compound, C(20)H(31)NO(5), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxa-tricyclo-[9.3.0.0(2),(4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from fused five-and ten-membered rings with the pipyridin-1-yl-methyl group as a substituent. The ten-membered ring adopts an approximate chair-chair conformation, while the six- and five-membered rings display chair and envelope conformations, respectively. The dihedral angle between the mean planes of the ten-membered ring and the lactone ring is 20.8 (3)°. An intra-molecular O-H⋯N hydrogen-bond occurs. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 22220021      PMCID: PMC3247403          DOI: 10.1107/S1600536811042644

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the reactivity of this sesquiterpene, see: Hwang et al. (2006 ▶); Neukirch et al. (2003 ▶); Neelakantan et al. (2009 ▶); Moumou et al. (2010 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶). For conformations of ten-membered rings, see: Castaneda-Acosta et al. (1997 ▶); Watson & Zabel (1982 ▶).

Experimental

Crystal data

C20H31NO5 M = 365.46 Orthorhombic, a = 8.0899 (5) Å b = 10.7562 (6) Å c = 22.5093 (13) Å V = 1958.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.85 × 0.48 × 0.36 mm

Data collection

Bruker X8 APEX CCD area-detector diffractometer 8978 measured reflections 2291 independent reflections 1707 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.087 S = 1.07 2291 reflections 239 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick,2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick,2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042644/fj2458sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042644/fj2458Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H31NO5F(000) = 792
Mr = 365.46Dx = 1.236 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 8987 reflections
a = 8.0899 (5) Åθ = 2.6–26.4°
b = 10.7562 (6) ŵ = 0.09 mm1
c = 22.5093 (13) ÅT = 296 K
V = 1958.7 (2) Å3Prism, colourless
Z = 40.85 × 0.48 × 0.36 mm
Bruker X8 APEX CCD area-detector diffractometer1707 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 26.4°, θmin = 3.3°
φ and ω scansh = −10→6
8978 measured reflectionsk = −13→13
2291 independent reflectionsl = −21→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.087w = 1/[σ2(Fo2) + (0.0377P)2 + 0.1661P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2291 reflectionsΔρmax = 0.16 e Å3
239 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.035 (3)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C1−0.2580 (3)0.4198 (2)−0.04973 (10)0.0372 (6)
H1−0.20420.3507−0.07050.045*
C2−0.2861 (3)0.5264 (2)−0.09033 (10)0.0368 (6)
H2−0.33390.5994−0.07070.044*
C3−0.1874 (3)0.5566 (2)−0.14313 (10)0.0413 (6)
C4−0.1764 (4)0.6933 (2)−0.15778 (11)0.0512 (7)
H4A−0.27860.7333−0.14590.061*
H4B−0.16550.7026−0.20050.061*
C5−0.0314 (4)0.7599 (2)−0.12752 (11)0.0521 (7)
H5A0.06890.7426−0.14970.062*
H5B−0.05050.8488−0.12910.062*
C6−0.0053 (3)0.7223 (2)−0.06357 (10)0.0395 (6)
H6−0.10720.7104−0.04080.047*
C70.1382 (3)0.6516 (2)−0.04136 (10)0.0389 (6)
C80.1253 (3)0.5682 (2)0.01315 (10)0.0383 (6)
H80.23800.54440.02450.046*
C90.0296 (3)0.4476 (2)−0.00041 (10)0.0360 (5)
H9A0.05570.4216−0.04060.043*
H9B0.06820.38300.02630.043*
C10−0.1594 (3)0.45804 (19)0.00554 (9)0.0336 (5)
H10−0.18540.54530.01380.040*
C11−0.2408 (3)0.3801 (2)0.05391 (10)0.0402 (6)
H11−0.18780.29810.05480.048*
C12−0.4147 (3)0.3652 (2)0.03188 (12)0.0475 (7)
C13−0.2395 (4)0.4343 (2)0.11655 (11)0.0496 (7)
H13A−0.29020.51600.11550.060*
H13B−0.30680.38210.14200.060*
C14−0.0526 (4)0.4736 (3)−0.16635 (11)0.0553 (7)
H14A−0.06920.3906−0.15180.083*
H14B0.05270.5039−0.15310.083*
H14C−0.05540.4732−0.20900.083*
C150.2820 (3)0.6167 (3)−0.08001 (12)0.0577 (8)
H15A0.27610.6619−0.11670.087*
H15B0.27870.5291−0.08810.087*
H15C0.38330.6368−0.06000.087*
C16−0.0852 (4)0.5186 (2)0.19775 (11)0.0609 (8)
H16A−0.16130.47860.22500.073*
H16B−0.12810.60070.18880.073*
C17−0.0073 (4)0.3219 (2)0.15623 (12)0.0555 (7)
H17A−0.00100.27390.11980.067*
H17B−0.08190.27910.18300.067*
C180.0815 (5)0.5311 (3)0.22704 (13)0.0763 (11)
H18A0.06960.57730.26380.092*
H18B0.15480.57760.20120.092*
C190.1611 (4)0.3277 (3)0.18398 (13)0.0736 (10)
H19A0.23870.36370.15600.088*
H19B0.19830.24430.19340.088*
C200.1572 (5)0.4055 (3)0.24020 (13)0.0764 (10)
H20A0.09270.36330.27040.092*
H20B0.26870.41640.25520.092*
N1−0.0753 (3)0.44545 (17)0.14266 (8)0.0434 (5)
O10.0559 (2)0.63372 (15)0.06146 (7)0.0471 (5)
H210.02260.58410.08640.071*
O2−0.4209 (2)0.38309 (15)−0.02731 (8)0.0470 (5)
O3−0.3509 (2)0.50418 (16)−0.14908 (7)0.0496 (5)
O40.1255 (2)0.78432 (15)−0.03166 (7)0.0490 (5)
O5−0.5382 (3)0.34028 (19)0.05929 (9)0.0674 (6)
U11U22U33U12U13U23
C10.0344 (13)0.0347 (11)0.0426 (13)−0.0018 (11)−0.0010 (11)−0.0057 (10)
C20.0345 (14)0.0383 (12)0.0375 (12)−0.0001 (11)−0.0080 (10)−0.0038 (10)
C30.0428 (15)0.0471 (13)0.0340 (12)−0.0030 (13)−0.0071 (11)−0.0045 (11)
C40.0597 (18)0.0551 (15)0.0389 (14)−0.0029 (15)−0.0084 (13)0.0070 (12)
C50.0610 (18)0.0456 (14)0.0496 (15)−0.0062 (14)−0.0019 (14)0.0091 (12)
C60.0409 (14)0.0355 (11)0.0420 (13)−0.0074 (12)−0.0008 (11)−0.0004 (10)
C70.0333 (13)0.0410 (12)0.0425 (13)−0.0068 (12)−0.0001 (11)−0.0077 (11)
C80.0322 (13)0.0428 (12)0.0399 (12)0.0027 (12)−0.0059 (10)−0.0066 (11)
C90.0378 (13)0.0321 (11)0.0382 (12)0.0045 (11)−0.0044 (11)−0.0013 (10)
C100.0364 (13)0.0266 (10)0.0378 (12)0.0022 (11)−0.0010 (10)−0.0032 (10)
C110.0468 (16)0.0319 (11)0.0421 (13)0.0018 (12)0.0052 (12)0.0025 (10)
C120.0490 (17)0.0343 (12)0.0592 (17)−0.0048 (13)0.0064 (15)0.0018 (12)
C130.0587 (18)0.0461 (13)0.0440 (14)0.0098 (15)0.0126 (13)0.0034 (12)
C140.0554 (18)0.0632 (16)0.0472 (15)−0.0023 (16)0.0081 (13)−0.0105 (13)
C150.0395 (16)0.0745 (18)0.0592 (17)−0.0019 (16)0.0072 (13)−0.0018 (15)
C160.101 (3)0.0442 (14)0.0379 (14)0.0050 (17)0.0115 (16)−0.0063 (12)
C170.074 (2)0.0468 (14)0.0460 (14)0.0131 (15)−0.0078 (15)−0.0031 (13)
C180.116 (3)0.070 (2)0.0428 (15)−0.024 (2)0.0013 (19)−0.0148 (15)
C190.081 (2)0.084 (2)0.0565 (18)0.019 (2)−0.0138 (18)−0.0114 (16)
C200.086 (2)0.091 (2)0.0522 (18)−0.001 (2)−0.0110 (17)−0.0086 (16)
N10.0642 (15)0.0354 (10)0.0305 (10)0.0038 (11)0.0050 (10)−0.0030 (9)
O10.0609 (12)0.0430 (9)0.0374 (9)−0.0072 (10)0.0007 (9)−0.0079 (7)
O20.0399 (10)0.0453 (9)0.0558 (11)−0.0112 (9)−0.0041 (9)0.0024 (8)
O30.0468 (11)0.0607 (11)0.0414 (9)−0.0071 (10)−0.0148 (8)−0.0030 (8)
O40.0540 (11)0.0392 (8)0.0538 (10)−0.0127 (9)−0.0059 (9)−0.0042 (8)
O50.0545 (13)0.0677 (12)0.0801 (14)−0.0161 (11)0.0205 (12)0.0067 (11)
C1—O21.465 (3)C11—C131.526 (3)
C1—C21.484 (3)C11—H110.9800
C1—C101.534 (3)C12—O51.204 (3)
C1—H10.9800C12—O21.347 (3)
C2—O31.442 (3)C13—N11.457 (3)
C2—C31.468 (3)C13—H13A0.9700
C2—H20.9800C13—H13B0.9700
C3—O31.445 (3)C14—H14A0.9600
C3—C141.503 (4)C14—H14B0.9600
C3—C41.509 (3)C14—H14C0.9600
C4—C51.534 (4)C15—H15A0.9600
C4—H4A0.9700C15—H15B0.9600
C4—H4B0.9700C15—H15C0.9600
C5—C61.510 (3)C16—N11.471 (3)
C5—H5A0.9700C16—C181.507 (5)
C5—H5B0.9700C16—H16A0.9700
C6—O41.442 (3)C16—H16B0.9700
C6—C71.475 (3)C17—N11.470 (3)
C6—H60.9800C17—C191.500 (4)
C7—O41.448 (3)C17—H17A0.9700
C7—C151.500 (3)C17—H17B0.9700
C7—C81.524 (3)C18—C201.512 (5)
C8—O11.413 (3)C18—H18A0.9700
C8—C91.541 (3)C18—H18B0.9700
C8—H80.9800C19—C201.518 (4)
C9—C101.540 (3)C19—H19A0.9700
C9—H9A0.9700C19—H19B0.9700
C9—H9B0.9700C20—H20A0.9700
C10—C111.524 (3)C20—H20B0.9700
C10—H100.9800O1—H210.8200
C11—C121.501 (4)
O2—C1—C2106.41 (19)C10—C11—C13116.5 (2)
O2—C1—C10105.09 (17)C12—C11—H11108.7
C2—C1—C10111.82 (18)C10—C11—H11108.7
O2—C1—H1111.1C13—C11—H11108.7
C2—C1—H1111.1O5—C12—O2120.5 (3)
C10—C1—H1111.1O5—C12—C11129.2 (3)
O3—C2—C359.51 (14)O2—C12—C11110.3 (2)
O3—C2—C1119.48 (19)N1—C13—C11114.2 (2)
C3—C2—C1125.9 (2)N1—C13—H13A108.7
O3—C2—H2113.7C11—C13—H13A108.7
C3—C2—H2113.7N1—C13—H13B108.7
C1—C2—H2113.7C11—C13—H13B108.7
O3—C3—C259.36 (15)H13A—C13—H13B107.6
O3—C3—C14113.6 (2)C3—C14—H14A109.5
C2—C3—C14123.0 (2)C3—C14—H14B109.5
O3—C3—C4114.5 (2)H14A—C14—H14B109.5
C2—C3—C4115.1 (2)C3—C14—H14C109.5
C14—C3—C4117.4 (2)H14A—C14—H14C109.5
C3—C4—C5113.8 (2)H14B—C14—H14C109.5
C3—C4—H4A108.8C7—C15—H15A109.5
C5—C4—H4A108.8C7—C15—H15B109.5
C3—C4—H4B108.8H15A—C15—H15B109.5
C5—C4—H4B108.8C7—C15—H15C109.5
H4A—C4—H4B107.7H15A—C15—H15C109.5
C6—C5—C4113.9 (2)H15B—C15—H15C109.5
C6—C5—H5A108.8N1—C16—C18111.6 (2)
C4—C5—H5A108.8N1—C16—H16A109.3
C6—C5—H5B108.8C18—C16—H16A109.3
C4—C5—H5B108.8N1—C16—H16B109.3
H5A—C5—H5B107.7C18—C16—H16B109.3
O4—C6—C759.51 (14)H16A—C16—H16B108.0
O4—C6—C5117.0 (2)N1—C17—C19112.9 (2)
C7—C6—C5124.8 (2)N1—C17—H17A109.0
O4—C6—H6114.6C19—C17—H17A109.0
C7—C6—H6114.6N1—C17—H17B109.0
C5—C6—H6114.6C19—C17—H17B109.0
O4—C7—C659.12 (14)H17A—C17—H17B107.8
O4—C7—C15112.9 (2)C16—C18—C20111.6 (3)
C6—C7—C15122.9 (2)C16—C18—H18A109.3
O4—C7—C8117.02 (18)C20—C18—H18A109.3
C6—C7—C8121.5 (2)C16—C18—H18B109.3
C15—C7—C8111.9 (2)C20—C18—H18B109.3
O1—C8—C7110.69 (18)H18A—C18—H18B108.0
O1—C8—C9111.89 (19)C17—C19—C20110.6 (3)
C7—C8—C9111.75 (18)C17—C19—H19A109.5
O1—C8—H8107.4C20—C19—H19A109.5
C7—C8—H8107.4C17—C19—H19B109.5
C9—C8—H8107.4C20—C19—H19B109.5
C10—C9—C8114.86 (18)H19A—C19—H19B108.1
C10—C9—H9A108.6C18—C20—C19109.7 (2)
C8—C9—H9A108.6C18—C20—H20A109.7
C10—C9—H9B108.6C19—C20—H20A109.7
C8—C9—H9B108.6C18—C20—H20B109.7
H9A—C9—H9B107.5C19—C20—H20B109.7
C11—C10—C1101.97 (17)H20A—C20—H20B108.2
C11—C10—C9116.8 (2)C13—N1—C17110.5 (2)
C1—C10—C9115.23 (19)C13—N1—C16109.5 (2)
C11—C10—H10107.4C17—N1—C16109.18 (19)
C1—C10—H10107.4C8—O1—H21109.5
C9—C10—H10107.4C12—O2—C1110.24 (19)
C12—C11—C10103.16 (19)C2—O3—C361.13 (14)
C12—C11—C13110.6 (2)C6—O4—C761.38 (15)
D—H···AD—HH···AD···AD—H···A
O1—H21···N10.822.112.927 (2)174
C1—H1···O5i0.982.473.322 (3)146
C10—H10···O4ii0.982.423.325 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H21⋯N10.822.112.927 (2)174
C1—H1⋯O5i0.982.473.322 (3)146
C10—H10⋯O4ii0.982.423.325 (3)153

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

3.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

4.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

5.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

6.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

7.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.