Literature DB >> 22220002

10α-Hy-droxy-4,9-dimethyl-13-[(4-phenyl-piperazin-1-yl)meth-yl]-3,8,15-trioxatetra-cyclo-[10.3.0.0.0]tetra-decan-14-one.

Mohamed Moumou, Ahmed Benharref, Abdelghani Oudahmane, Ahmed Elhakmaoui, Moha Berraho.   

Abstract

The title compound, C(25)H(34)N(2)O(5), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methyl-ene-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule contains a fused five- and ten-membered ring system. The ten-membered ring adopts an approximate chair-chair conformation, while the five-membered ring is in an envelope conformation, with the C atom closest to the hy-droxy group forming the flap. The piperazine ring is in a chair conformation. In the crystal, O-H⋯O hydrogen bonds connect mol-ecules into chains along [100]. Weak inter-molecular C-H⋯O hydrogen bonds are also present.

Entities:  

Year:  2011        PMID: 22220002      PMCID: PMC3247384          DOI: 10.1107/S1600536811042012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); Bellakhdar (1997 ▶); El Hassany et al. (2004 ▶). For the reactivity of this sesquiterpene, see: Hwang et al. (2006 ▶); Neukirch et al. (2003 ▶); Neelakantan et al. (2009 ▶). For the synthesis, see: Moumou et al. (2010 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C25H34N2O5 M = 442.54 Orthorhombic, a = 7.7666 (5) Å b = 9.6059 (8) Å c = 31.181 (2) Å V = 2326.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.45 × 0.36 × 0.28 mm

Data collection

Bruker X8 APEX CCD area-detector diffractometer 10922 measured reflections 2723 independent reflections 2362 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.104 S = 1.06 2723 reflections 293 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia,1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811042012/lh5350sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811042012/lh5350Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H34N2O5F(000) = 952
Mr = 442.54Dx = 1.264 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 10922 reflections
a = 7.7666 (5) Åθ = 2.7–26.4°
b = 9.6059 (8) ŵ = 0.09 mm1
c = 31.181 (2) ÅT = 298 K
V = 2326.2 (3) Å3Prism, colourless
Z = 40.45 × 0.36 × 0.28 mm
Bruker X8 APEX CCD area-detector diffractometer2362 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.024
graphiteθmax = 26.4°, θmin = 2.7°
φ and ω scansh = −9→9
10922 measured reflectionsk = −11→7
2723 independent reflectionsl = −38→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0537P)2 + 0.4378P] where P = (Fo2 + 2Fc2)/3
2723 reflections(Δ/σ)max < 0.001
293 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C10.5441 (3)0.2316 (2)0.91768 (7)0.0347 (5)
H10.48790.16650.89790.042*
C20.5370 (3)0.1777 (2)0.96267 (7)0.0327 (5)
H20.61430.22520.98270.039*
C30.4930 (3)0.0341 (3)0.97477 (7)0.0349 (5)
C40.5705 (3)−0.0184 (3)1.01607 (8)0.0415 (6)
H4A0.4920−0.08401.02930.050*
H4B0.58590.05911.03560.050*
C50.7438 (3)−0.0892 (3)1.00857 (8)0.0435 (6)
H5A0.7981−0.10761.03600.052*
H5B0.7252−0.17770.99430.052*
C60.8616 (3)−0.0009 (3)0.98170 (8)0.0383 (6)
H60.85880.09850.98880.046*
C70.9154 (3)−0.0312 (3)0.93753 (8)0.0383 (6)
C80.9740 (3)0.0848 (3)0.90772 (8)0.0404 (6)
H81.05670.04370.88760.048*
C90.8307 (4)0.1514 (3)0.88067 (8)0.0416 (6)
H9A0.75180.07830.87200.050*
H9B0.88250.18850.85480.050*
C100.7253 (3)0.2680 (2)0.90184 (7)0.0311 (5)
H100.79140.30420.92620.037*
C110.5317 (3)0.4573 (3)0.89329 (8)0.0414 (6)
C120.6839 (3)0.3904 (3)0.87154 (7)0.0376 (6)
H120.64550.35230.84400.045*
C130.8251 (4)0.4953 (3)0.86298 (8)0.0431 (6)
H13A0.77290.57930.85160.052*
H13B0.87860.51940.89010.052*
C140.4374 (4)−0.0747 (3)0.94329 (9)0.0473 (6)
H14A0.3988−0.03060.91740.071*
H14B0.3451−0.12840.95540.071*
H14C0.5328−0.13490.93690.071*
C151.1040 (4)0.5453 (3)0.83687 (8)0.0519 (7)
H15A1.14520.54670.86620.062*
H15B1.06680.63870.82950.062*
C160.9013 (3)0.4473 (3)0.78904 (8)0.0490 (7)
H16A0.86180.53930.78080.059*
H16B0.80510.38360.78640.059*
C171.0437 (4)0.4021 (3)0.75924 (8)0.0509 (7)
H17A1.07940.30820.76640.061*
H17B1.00180.40180.72990.061*
C181.2483 (4)0.5027 (4)0.80761 (8)0.0542 (8)
H18A1.34180.56910.81000.065*
H18B1.29150.41220.81630.065*
C191.3260 (4)0.4797 (3)0.73301 (8)0.0448 (6)
C201.3357 (4)0.3688 (3)0.70444 (8)0.0473 (6)
H201.24900.30200.70400.057*
C211.4749 (4)0.3575 (4)0.67644 (8)0.0571 (8)
H211.47970.28350.65730.069*
C221.6044 (4)0.4538 (4)0.67685 (9)0.0645 (9)
H221.69920.44340.65890.077*
C231.5932 (4)0.5657 (4)0.70384 (10)0.0714 (10)
H231.67920.63310.70350.086*
C241.4562 (4)0.5797 (4)0.73158 (9)0.0615 (8)
H241.45030.65680.74960.074*
C260.8708 (4)−0.1630 (3)0.91409 (9)0.0535 (7)
H26A0.8222−0.22880.93380.080*
H26B0.9730−0.20150.90150.080*
H26C0.7886−0.14280.89190.080*
N10.9589 (3)0.4506 (2)0.83356 (6)0.0398 (5)
N21.1901 (3)0.4959 (2)0.76275 (6)0.0461 (6)
O10.4819 (3)0.5750 (2)0.89055 (6)0.0565 (5)
O20.3686 (2)0.14622 (18)0.97984 (5)0.0400 (4)
O30.4524 (2)0.36458 (19)0.91853 (5)0.0447 (4)
O51.0321 (2)−0.0547 (2)0.97319 (6)0.0543 (5)
O41.0600 (2)0.19268 (19)0.92937 (7)0.0538 (5)
H41.13920.16000.94360.081*
U11U22U33U12U13U23
C10.0319 (12)0.0320 (12)0.0403 (12)−0.0020 (11)−0.0021 (11)0.0019 (10)
C20.0281 (11)0.0336 (12)0.0364 (11)−0.0008 (11)0.0030 (10)0.0008 (9)
C30.0274 (11)0.0351 (12)0.0421 (12)−0.0020 (10)0.0068 (10)0.0002 (10)
C40.0464 (14)0.0380 (13)0.0402 (12)−0.0040 (12)0.0048 (11)0.0072 (11)
C50.0486 (14)0.0374 (14)0.0446 (13)0.0030 (12)−0.0051 (12)0.0065 (11)
C60.0304 (12)0.0343 (13)0.0502 (13)0.0040 (11)−0.0070 (11)−0.0018 (11)
C70.0330 (12)0.0338 (13)0.0479 (13)0.0062 (11)−0.0035 (11)−0.0007 (11)
C80.0326 (12)0.0363 (13)0.0522 (14)0.0066 (11)0.0058 (11)−0.0029 (11)
C90.0485 (15)0.0362 (13)0.0401 (12)0.0049 (13)0.0062 (12)0.0012 (11)
C100.0303 (12)0.0302 (12)0.0328 (11)−0.0005 (10)−0.0014 (9)0.0020 (9)
C110.0404 (13)0.0420 (14)0.0417 (13)0.0051 (13)−0.0057 (11)0.0079 (11)
C120.0414 (13)0.0336 (13)0.0377 (12)0.0019 (11)−0.0008 (11)0.0024 (10)
C130.0503 (14)0.0352 (13)0.0438 (13)−0.0031 (13)0.0073 (12)0.0012 (11)
C140.0444 (14)0.0394 (15)0.0582 (15)−0.0041 (13)0.0002 (13)−0.0033 (12)
C150.0527 (16)0.0597 (18)0.0434 (13)−0.0120 (16)0.0041 (12)−0.0116 (13)
C160.0419 (14)0.0639 (18)0.0413 (13)−0.0058 (15)−0.0014 (11)0.0009 (13)
C170.0485 (15)0.0646 (18)0.0396 (13)−0.0098 (16)−0.0015 (12)−0.0086 (13)
C180.0467 (14)0.073 (2)0.0431 (13)−0.0101 (15)0.0003 (12)−0.0112 (15)
C190.0479 (14)0.0498 (15)0.0368 (12)−0.0031 (14)0.0010 (11)0.0005 (12)
C200.0538 (16)0.0476 (15)0.0403 (13)−0.0030 (15)0.0013 (13)0.0019 (12)
C210.069 (2)0.0614 (18)0.0413 (14)0.0143 (19)0.0050 (14)0.0000 (14)
C220.0538 (18)0.098 (3)0.0419 (15)0.003 (2)0.0075 (13)0.0051 (17)
C230.0574 (19)0.099 (3)0.0578 (18)−0.030 (2)0.0051 (16)0.0013 (19)
C240.0633 (18)0.068 (2)0.0528 (16)−0.0199 (19)0.0080 (15)−0.0106 (15)
C260.0663 (19)0.0335 (14)0.0608 (16)0.0041 (14)0.0044 (15)−0.0079 (13)
N10.0409 (11)0.0424 (12)0.0362 (10)−0.0028 (11)0.0019 (9)−0.0001 (9)
N20.0454 (12)0.0543 (14)0.0386 (10)−0.0091 (12)0.0029 (10)−0.0090 (10)
O10.0590 (12)0.0477 (11)0.0627 (11)0.0188 (11)0.0078 (10)0.0146 (9)
O20.0310 (8)0.0414 (9)0.0477 (9)0.0018 (8)0.0081 (7)0.0000 (8)
O30.0333 (9)0.0458 (10)0.0548 (10)0.0089 (9)0.0045 (8)0.0136 (9)
O50.0371 (10)0.0594 (12)0.0662 (12)0.0123 (10)−0.0069 (9)0.0060 (10)
O40.0350 (10)0.0429 (11)0.0834 (14)−0.0036 (9)−0.0090 (10)0.0003 (10)
C1—O31.463 (3)C13—H13A0.9700
C1—C21.496 (3)C13—H13B0.9700
C1—C101.532 (3)C14—H14A0.9600
C1—H10.9800C14—H14B0.9600
C2—O21.445 (3)C14—H14C0.9600
C2—C31.471 (3)C15—N11.452 (3)
C2—H20.9800C15—C181.502 (4)
C3—O21.456 (3)C15—H15A0.9700
C3—C141.497 (4)C15—H15B0.9700
C3—C41.508 (3)C16—N11.459 (3)
C4—C51.526 (4)C16—C171.508 (4)
C4—H4A0.9700C16—H16A0.9700
C4—H4B0.9700C16—H16B0.9700
C5—C61.503 (4)C17—N21.455 (3)
C5—H5A0.9700C17—H17A0.9700
C5—H5B0.9700C17—H17B0.9700
C6—O51.446 (3)C18—N21.471 (3)
C6—C71.468 (3)C18—H18A0.9700
C6—H60.9800C18—H18B0.9700
C7—O51.452 (3)C19—C201.390 (4)
C7—C261.502 (4)C19—C241.395 (4)
C7—C81.521 (4)C19—N21.414 (3)
C8—O41.406 (3)C20—C211.394 (4)
C8—C91.536 (3)C20—H200.9300
C8—H80.9800C21—C221.367 (5)
C9—C101.537 (3)C21—H210.9300
C9—H9A0.9700C22—C231.368 (5)
C9—H9B0.9700C22—H220.9300
C10—C121.542 (3)C23—C241.378 (4)
C10—H100.9800C23—H230.9300
C11—O11.198 (3)C24—H240.9300
C11—O31.339 (3)C26—H26A0.9600
C11—C121.507 (3)C26—H26B0.9600
C12—C131.513 (4)C26—H26C0.9600
C12—H120.9800O4—H40.8200
C13—N11.451 (3)
O3—C1—C2105.50 (18)N1—C13—H13A108.4
O3—C1—C10104.70 (18)C12—C13—H13A108.4
C2—C1—C10114.50 (19)N1—C13—H13B108.4
O3—C1—H1110.6C12—C13—H13B108.4
C2—C1—H1110.6H13A—C13—H13B107.4
C10—C1—H1110.6C3—C14—H14A109.5
O2—C2—C359.88 (14)C3—C14—H14B109.5
O2—C2—C1116.93 (19)H14A—C14—H14B109.5
C3—C2—C1125.0 (2)C3—C14—H14C109.5
O2—C2—H2114.5H14A—C14—H14C109.5
C3—C2—H2114.5H14B—C14—H14C109.5
C1—C2—H2114.5N1—C15—C18111.4 (2)
O2—C3—C259.19 (15)N1—C15—H15A109.3
O2—C3—C14113.4 (2)C18—C15—H15A109.3
C2—C3—C14123.6 (2)N1—C15—H15B109.3
O2—C3—C4114.79 (19)C18—C15—H15B109.3
C2—C3—C4116.1 (2)H15A—C15—H15B108.0
C14—C3—C4116.2 (2)N1—C16—C17111.6 (2)
C3—C4—C5111.7 (2)N1—C16—H16A109.3
C3—C4—H4A109.3C17—C16—H16A109.3
C5—C4—H4A109.3N1—C16—H16B109.3
C3—C4—H4B109.3C17—C16—H16B109.3
C5—C4—H4B109.3H16A—C16—H16B108.0
H4A—C4—H4B107.9N2—C17—C16110.4 (2)
C6—C5—C4111.8 (2)N2—C17—H17A109.6
C6—C5—H5A109.3C16—C17—H17A109.6
C4—C5—H5A109.3N2—C17—H17B109.6
C6—C5—H5B109.3C16—C17—H17B109.6
C4—C5—H5B109.3H17A—C17—H17B108.1
H5A—C5—H5B107.9N2—C18—C15111.1 (2)
O5—C6—C759.77 (15)N2—C18—H18A109.4
O5—C6—C5117.3 (2)C15—C18—H18A109.4
C7—C6—C5125.7 (2)N2—C18—H18B109.4
O5—C6—H6114.2C15—C18—H18B109.4
C7—C6—H6114.2H18A—C18—H18B108.0
C5—C6—H6114.2C20—C19—C24117.9 (3)
O5—C7—C659.36 (15)C20—C19—N2123.0 (2)
O5—C7—C26112.7 (2)C24—C19—N2119.1 (2)
C6—C7—C26123.9 (2)C19—C20—C21120.2 (3)
O5—C7—C8113.3 (2)C19—C20—H20119.9
C6—C7—C8120.8 (2)C21—C20—H20119.9
C26—C7—C8112.9 (2)C22—C21—C20120.8 (3)
O4—C8—C7112.9 (2)C22—C21—H21119.6
O4—C8—C9107.5 (2)C20—C21—H21119.6
C7—C8—C9115.1 (2)C21—C22—C23119.4 (3)
O4—C8—H8107.0C21—C22—H22120.3
C7—C8—H8107.0C23—C22—H22120.3
C9—C8—H8107.0C22—C23—C24120.8 (3)
C8—C9—C10117.0 (2)C22—C23—H23119.6
C8—C9—H9A108.0C24—C23—H23119.6
C10—C9—H9A108.0C23—C24—C19120.8 (3)
C8—C9—H9B108.0C23—C24—H24119.6
C10—C9—H9B108.0C19—C24—H24119.6
H9A—C9—H9B107.3C7—C26—H26A109.5
C1—C10—C9117.5 (2)C7—C26—H26B109.5
C1—C10—C12100.36 (18)H26A—C26—H26B109.5
C9—C10—C12113.83 (19)C7—C26—H26C109.5
C1—C10—H10108.2H26A—C26—H26C109.5
C9—C10—H10108.2H26B—C26—H26C109.5
C12—C10—H10108.2C13—N1—C15108.97 (19)
O1—C11—O3121.5 (2)C13—N1—C16112.8 (2)
O1—C11—C12128.6 (2)C15—N1—C16108.6 (2)
O3—C11—C12109.9 (2)C19—N2—C17117.8 (2)
C11—C12—C13111.3 (2)C19—N2—C18113.5 (2)
C11—C12—C10102.31 (19)C17—N2—C18109.8 (2)
C13—C12—C10117.7 (2)C2—O2—C360.93 (15)
C11—C12—H12108.4C11—O3—C1110.30 (18)
C13—C12—H12108.4C6—O5—C760.87 (15)
C10—C12—H12108.4C8—O4—H4109.5
N1—C13—C12115.7 (2)
D—H···AD—HH···AD···AD—H···A
O4—H4···O2i0.822.112.902 (3)161
C14—H14B···O5ii0.962.593.289 (3)129
C21—H21···O1iii0.932.513.441 (4)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O2i0.822.112.902 (3)161
C14—H14B⋯O5ii0.962.593.289 (3)129
C21—H21⋯O1iii0.932.513.441 (4)174

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

4.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

5.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

6.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

7.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.