Literature DB >> 22219993

3-(2H-1,3-Benzodioxol-5-ylmeth-yl)-2-(2-meth-oxy-phen-yl)-1,3-thia-zolidin-4-one.

Victor Facchinetti, Claudia R B Gomes, Wilson Cunico, Solange M S V Wardell, James L Wardell, Edward R T Tiekink.   

Abstract

The title mol-ecule, C(18)H(17)NO(4)S, features a 1,3-thia-zolidine ring that is twisted about the S-C(methyl-ene) bond. With reference to this ring, the 1,3-benzodioxole and benzene rings lie to either side and form dihedral angles of 69.72 (16) and 83.60 (14)°, respectively, with the central ring. Significant twisting in the mol-ecule is confirmed by the dihedral angle of 79.91 (13)° formed between the outer rings. Linear supra-molecular chains along the a-axis direction mediated by C-H⋯O inter-actions feature in the crystal packing.

Entities:  

Year:  2011        PMID: 22219993      PMCID: PMC3247375          DOI: 10.1107/S1600536811041262

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of thia­zolidinones, see: Cunico et al. (2008a ▶); Solomon et al. (2007 ▶); Kavitha et al. (2006 ▶); Sharma et al. (2006 ▶); Ravichandran et al. (2009 ▶); Rao et al. (2004 ▶). For background to the synthesis, see: Cunico et al. (2008b ▶); Rawal et al. (2008 ▶), Gomes et al. (2010 ▶), Neuenfeldt et al. (2011 ▶). For related studies on the synthesis and biological evaluation of thia­zolidinones, see: Cunico et al. (2006 ▶, 2007 ▶). For a thia­zolidinone structure, see: Neuenfeldt et al. (2009 ▶).

Experimental

Crystal data

C18H17NO4S M = 343.39 Monoclinic, a = 6.8137 (3) Å b = 12.5753 (7) Å c = 18.5071 (9) Å β = 91.825 (3)° V = 1584.96 (14) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 120 K 0.16 × 0.06 × 0.05 mm

Data collection

Bruker–Nonius APEXII CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.553, T max = 0.746 21683 measured reflections 3625 independent reflections 1935 reflections with I > 2σ(I) R int = 0.159

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.180 S = 1.02 3625 reflections 218 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.43 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041262/hb6438sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041262/hb6438Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041262/hb6438Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17NO4SF(000) = 720
Mr = 343.39Dx = 1.439 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7149 reflections
a = 6.8137 (3) Åθ = 2.9–27.5°
b = 12.5753 (7) ŵ = 0.23 mm1
c = 18.5071 (9) ÅT = 120 K
β = 91.825 (3)°Block, colourless
V = 1584.96 (14) Å30.16 × 0.06 × 0.05 mm
Z = 4
Bruker–Nonius APEXII CCD camera on κ-goniostat diffractometer3625 independent reflections
Radiation source: Bruker–Nonius FR591 rotating anode1935 reflections with I > 2σ(I)
10cm confocal mirrorsRint = 0.159
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.2°
φ and ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −15→16
Tmin = 0.553, Tmax = 0.746l = −23→24
21683 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.180H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0754P)2] where P = (Fo2 + 2Fc2)/3
3625 reflections(Δ/σ)max < 0.001
218 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.48794 (13)0.72256 (9)0.17227 (5)0.0365 (3)
O10.3856 (3)0.60647 (19)−0.01787 (12)0.0321 (6)
O20.9136 (3)0.76552 (19)0.24212 (12)0.0291 (6)
O31.2380 (3)0.9163 (2)−0.11437 (14)0.0358 (6)
O41.0102 (3)1.05303 (19)−0.11655 (13)0.0328 (6)
N10.6500 (4)0.6556 (2)0.05355 (13)0.0231 (6)
C10.7138 (4)0.6948 (3)0.12420 (17)0.0246 (8)
H10.78490.76350.11740.029*
C20.4558 (5)0.6343 (3)0.04091 (18)0.0260 (8)
C30.3391 (5)0.6492 (3)0.10759 (19)0.0358 (9)
H3A0.30340.57920.12790.043*
H3B0.21670.68880.09570.043*
C40.8488 (4)0.6199 (3)0.16581 (17)0.0239 (8)
C50.9521 (4)0.6609 (3)0.22695 (17)0.0236 (8)
C61.0804 (5)0.5969 (3)0.26668 (18)0.0278 (8)
H61.15250.62530.30700.033*
C71.1036 (5)0.4905 (3)0.24740 (18)0.0300 (9)
H71.19170.44650.27470.036*
C80.9991 (5)0.4487 (3)0.18869 (18)0.0289 (8)
H81.01270.37570.17650.035*
C90.8740 (5)0.5139 (3)0.14744 (17)0.0260 (8)
H90.80530.48560.10630.031*
C100.9967 (5)0.8064 (3)0.30861 (18)0.0321 (9)
H10A0.94990.76420.34910.048*
H10B0.95680.88070.31450.048*
H10C1.14020.80220.30770.048*
C110.7881 (5)0.6555 (3)−0.00479 (17)0.0281 (8)
H11A0.73090.6146−0.04600.034*
H11B0.90990.61880.01190.034*
C120.8399 (5)0.7660 (3)−0.03050 (16)0.0254 (8)
C131.0282 (5)0.7820 (3)−0.05777 (17)0.0245 (8)
H131.12440.7273−0.05700.029*
C141.0652 (4)0.8808 (3)−0.08553 (18)0.0264 (8)
C151.1839 (5)1.0137 (3)−0.1505 (2)0.0372 (9)
H15A1.15621.0004−0.20260.045*
H15B1.29171.0662−0.14560.045*
C160.9303 (5)0.9626 (3)−0.08612 (18)0.0285 (8)
C170.7480 (5)0.9499 (3)−0.05749 (17)0.0280 (8)
H170.65631.0068−0.05620.034*
C180.7038 (5)0.8489 (3)−0.03018 (17)0.0260 (8)
H180.57810.8366−0.01100.031*
U11U22U33U12U13U23
S10.0270 (5)0.0496 (7)0.0329 (5)0.0028 (4)0.0009 (4)−0.0113 (5)
O10.0314 (13)0.0343 (16)0.0300 (14)0.0017 (11)−0.0083 (11)−0.0041 (12)
O20.0332 (13)0.0292 (15)0.0245 (13)0.0021 (11)−0.0070 (10)−0.0028 (11)
O30.0291 (13)0.0316 (16)0.0472 (16)0.0008 (11)0.0082 (11)0.0041 (12)
O40.0329 (14)0.0290 (15)0.0367 (14)−0.0010 (11)0.0049 (11)0.0016 (12)
N10.0231 (14)0.0276 (17)0.0183 (13)−0.0027 (12)−0.0017 (11)−0.0009 (12)
C10.0246 (17)0.026 (2)0.0232 (17)−0.0041 (14)−0.0026 (14)−0.0039 (15)
C20.0269 (17)0.023 (2)0.0279 (19)−0.0020 (14)−0.0041 (15)0.0032 (16)
C30.0270 (18)0.050 (3)0.0305 (19)−0.0054 (17)0.0024 (15)−0.0001 (18)
C40.0199 (16)0.030 (2)0.0223 (17)−0.0005 (14)0.0019 (13)0.0035 (15)
C50.0213 (16)0.028 (2)0.0218 (17)−0.0039 (14)0.0000 (13)−0.0007 (15)
C60.0255 (17)0.035 (2)0.0225 (18)−0.0062 (16)−0.0016 (14)0.0015 (16)
C70.0307 (19)0.029 (2)0.030 (2)0.0074 (16)0.0020 (16)0.0040 (17)
C80.0306 (19)0.027 (2)0.0294 (19)−0.0010 (15)0.0006 (15)−0.0041 (16)
C90.0280 (18)0.029 (2)0.0207 (17)−0.0037 (15)−0.0012 (14)0.0010 (15)
C100.037 (2)0.031 (2)0.0284 (19)−0.0037 (17)−0.0062 (15)−0.0091 (17)
C110.0308 (18)0.031 (2)0.0220 (17)0.0019 (16)0.0018 (14)−0.0015 (16)
C120.0283 (18)0.031 (2)0.0164 (17)−0.0006 (15)−0.0049 (14)−0.0026 (15)
C130.0251 (17)0.024 (2)0.0239 (17)0.0047 (14)−0.0016 (14)0.0000 (15)
C140.0231 (17)0.031 (2)0.0250 (18)−0.0010 (15)−0.0005 (14)−0.0027 (16)
C150.036 (2)0.032 (2)0.044 (2)0.0046 (17)0.0117 (18)0.0017 (18)
C160.0322 (19)0.029 (2)0.0240 (18)−0.0043 (16)−0.0032 (15)0.0000 (16)
C170.0296 (19)0.030 (2)0.0239 (18)0.0047 (15)−0.0020 (15)−0.0021 (16)
C180.0225 (16)0.030 (2)0.0256 (17)−0.0013 (15)−0.0020 (14)0.0000 (16)
S1—C31.799 (4)C7—C81.384 (5)
S1—C11.836 (3)C7—H70.9500
O1—C21.225 (4)C8—C91.393 (5)
O2—C51.372 (4)C8—H80.9500
O2—C101.433 (4)C9—H90.9500
O3—C141.382 (4)C10—H10A0.9800
O3—C151.437 (4)C10—H10B0.9800
O4—C161.388 (4)C10—H10C0.9800
O4—C151.445 (4)C11—C121.514 (5)
N1—C21.363 (4)C11—H11A0.9900
N1—C11.451 (4)C11—H11B0.9900
N1—C111.455 (4)C12—C181.395 (5)
C1—C41.510 (5)C12—C131.408 (5)
C1—H11.0000C13—C141.372 (5)
C2—C31.501 (5)C13—H130.9500
C3—H3A0.9900C14—C161.379 (5)
C3—H3B0.9900C15—H15A0.9900
C4—C91.387 (5)C15—H15B0.9900
C4—C51.411 (4)C16—C171.375 (5)
C5—C61.382 (5)C17—C181.404 (5)
C6—C71.395 (5)C17—H170.9500
C6—H60.9500C18—H180.9500
C3—S1—C192.50 (15)C4—C9—H9119.7
C5—O2—C10116.5 (3)C8—C9—H9119.7
C14—O3—C15104.2 (2)O2—C10—H10A109.5
C16—O4—C15103.5 (3)O2—C10—H10B109.5
C2—N1—C1118.9 (3)H10A—C10—H10B109.5
C2—N1—C11121.3 (3)O2—C10—H10C109.5
C1—N1—C11119.1 (3)H10A—C10—H10C109.5
N1—C1—C4114.1 (3)H10B—C10—H10C109.5
N1—C1—S1105.6 (2)N1—C11—C12113.3 (3)
C4—C1—S1112.2 (2)N1—C11—H11A108.9
N1—C1—H1108.2C12—C11—H11A108.9
C4—C1—H1108.2N1—C11—H11B108.9
S1—C1—H1108.2C12—C11—H11B108.9
O1—C2—N1123.9 (3)H11A—C11—H11B107.7
O1—C2—C3124.3 (3)C18—C12—C13120.5 (3)
N1—C2—C3111.8 (3)C18—C12—C11121.5 (3)
C2—C3—S1108.0 (2)C13—C12—C11117.9 (3)
C2—C3—H3A110.1C14—C13—C12116.4 (3)
S1—C3—H3A110.1C14—C13—H13121.8
C2—C3—H3B110.1C12—C13—H13121.8
S1—C3—H3B110.1C13—C14—C16123.2 (3)
H3A—C3—H3B108.4C13—C14—O3127.3 (3)
C9—C4—C5119.0 (3)C16—C14—O3109.4 (3)
C9—C4—C1123.5 (3)O3—C15—O4106.9 (3)
C5—C4—C1117.5 (3)O3—C15—H15A110.3
O2—C5—C6124.8 (3)O4—C15—H15A110.3
O2—C5—C4114.9 (3)O3—C15—H15B110.3
C6—C5—C4120.3 (3)O4—C15—H15B110.3
C5—C6—C7119.8 (3)H15A—C15—H15B108.6
C5—C6—H6120.1C17—C16—C14121.4 (3)
C7—C6—H6120.1C17—C16—O4128.5 (3)
C8—C7—C6120.4 (3)C14—C16—O4110.1 (3)
C8—C7—H7119.8C16—C17—C18116.8 (3)
C6—C7—H7119.8C16—C17—H17121.6
C7—C8—C9119.8 (3)C18—C17—H17121.6
C7—C8—H8120.1C12—C18—C17121.7 (3)
C9—C8—H8120.1C12—C18—H18119.2
C4—C9—C8120.7 (3)C17—C18—H18119.2
C2—N1—C1—C4115.2 (3)C5—C4—C9—C80.1 (5)
C11—N1—C1—C4−74.1 (4)C1—C4—C9—C8−179.2 (3)
C2—N1—C1—S1−8.5 (4)C7—C8—C9—C4−1.8 (5)
C11—N1—C1—S1162.2 (2)C2—N1—C11—C12101.4 (4)
C3—S1—C1—N114.3 (2)C1—N1—C11—C12−69.0 (4)
C3—S1—C1—C4−110.5 (3)N1—C11—C12—C18−33.1 (4)
C1—N1—C2—O1175.9 (3)N1—C11—C12—C13149.5 (3)
C11—N1—C2—O15.4 (5)C18—C12—C13—C14−2.1 (5)
C1—N1—C2—C3−4.0 (4)C11—C12—C13—C14175.3 (3)
C11—N1—C2—C3−174.5 (3)C12—C13—C14—C161.4 (5)
O1—C2—C3—S1−165.0 (3)C12—C13—C14—O3179.1 (3)
N1—C2—C3—S114.9 (4)C15—O3—C14—C13166.6 (3)
C1—S1—C3—C2−16.7 (3)C15—O3—C14—C16−15.4 (4)
N1—C1—C4—C9−14.6 (4)C14—O3—C15—O423.8 (4)
S1—C1—C4—C9105.4 (3)C16—O4—C15—O3−23.0 (3)
N1—C1—C4—C5166.0 (3)C13—C14—C16—C170.9 (5)
S1—C1—C4—C5−73.9 (3)O3—C14—C16—C17−177.2 (3)
C10—O2—C5—C6−7.3 (4)C13—C14—C16—O4179.2 (3)
C10—O2—C5—C4172.6 (3)O3—C14—C16—O41.1 (4)
C9—C4—C5—O2−178.2 (3)C15—O4—C16—C17−168.2 (3)
C1—C4—C5—O21.2 (4)C15—O4—C16—C1413.7 (4)
C9—C4—C5—C61.7 (4)C14—C16—C17—C18−2.3 (5)
C1—C4—C5—C6−179.0 (3)O4—C16—C17—C18179.8 (3)
O2—C5—C6—C7178.1 (3)C13—C12—C18—C170.8 (5)
C4—C5—C6—C7−1.8 (5)C11—C12—C18—C17−176.6 (3)
C5—C6—C7—C80.0 (5)C16—C17—C18—C121.5 (5)
C6—C7—C8—C91.7 (5)
D—H···AD—HH···AD···AD—H···A
C9—H9···O1i0.952.363.302 (4)170
C13—H13···O1ii0.952.433.352 (4)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O1i0.952.363.302 (4)170
C13—H13⋯O1ii0.952.433.352 (4)163

Symmetry codes: (i) ; (ii) .

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