Literature DB >> 22219981

rac-Dimethyl 2-(tert-butyl-amino)-5-oxo-4,5-dihydro-pyrano[3,2-c]chromene-3,4-dicarboxyl-ate.

S Antony Inglebert, K Sethusankar, Yuvaraj Arun, Paramasivam T Perumal.   

Abstract

The title compound, C(20)H(21)NO(7), is asymmetric with a chiral centre located in the pyran ring and crystallizes as a racemate. The mol-ecular framework is somewhat bent; the coumarin moiety and the pyran ring are inclined by 7.85 (5)°. The mol-ecular structure is characterized by an intra-molecular N-H⋯O hydrogen bond, which generates an S(6) ring motif, and the crystal packing is stabilized by inter-molecular C-H⋯O hydrogen bonds. The 3-carboxyl-ate O atom is involved in both of them, having a bifurcated character.

Entities:  

Year:  2011        PMID: 22219981      PMCID: PMC3247363          DOI: 10.1107/S1600536811041493

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological activity of coumarin and its derivatives, see: Borges et al. (2005 ▶); Gursoy & Karali (2003 ▶); Moffett (1964 ▶). For a related structure, see: Fun et al. (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H21NO7 M = 387.38 Monoclinic, a = 10.0907 (2) Å b = 16.3943 (4) Å c = 11.8266 (2) Å β = 107.941 (1)° V = 1861.34 (7) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.969, T max = 0.979 27295 measured reflections 6688 independent reflections 4069 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.158 S = 1.00 6688 reflections 258 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811041493/ld2028sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811041493/ld2028Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811041493/ld2028Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21NO7F(000) = 816
Mr = 387.38Dx = 1.382 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6688 reflections
a = 10.0907 (2) Åθ = 2.2–32.5°
b = 16.3943 (4) ŵ = 0.11 mm1
c = 11.8266 (2) ÅT = 293 K
β = 107.941 (1)°Block, colourless
V = 1861.34 (7) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer6688 independent reflections
Radiation source: fine-focus sealed tube4069 reflections with I > 2σ(I)
graphiteRint = 0.030
ω and φ scansθmax = 32.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→15
Tmin = 0.969, Tmax = 0.979k = −24→24
27295 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0737P)2 + 0.294P] where P = (Fo2 + 2Fc2)/3
6688 reflections(Δ/σ)max < 0.001
258 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.60272 (14)0.10657 (9)0.40846 (13)0.0459 (3)
C20.68858 (16)0.12542 (11)0.52188 (14)0.0574 (4)
H20.70550.17940.54620.069*
C30.74773 (16)0.06267 (13)0.59709 (15)0.0632 (5)
H30.80490.07450.67350.076*
C40.72413 (16)−0.01784 (12)0.56175 (14)0.0593 (4)
H40.7647−0.05950.61430.071*
C50.64022 (15)−0.03630 (10)0.44824 (13)0.0489 (3)
H50.6253−0.09040.42410.059*
C60.57782 (13)0.02628 (8)0.36981 (12)0.0405 (3)
C70.48651 (12)0.01446 (7)0.25070 (11)0.0371 (3)
C80.42265 (13)0.07696 (7)0.18224 (11)0.0373 (3)
C90.44864 (15)0.15958 (8)0.22674 (13)0.0458 (3)
C100.32265 (12)0.06565 (7)0.06042 (11)0.0364 (2)
H100.34680.10370.00600.044*
C110.33327 (13)−0.02048 (7)0.01863 (11)0.0364 (3)
C120.40362 (13)−0.08012 (7)0.09507 (11)0.0376 (3)
C130.17418 (13)0.08403 (7)0.06189 (12)0.0385 (3)
C14−0.03365 (16)0.15297 (11)−0.03895 (17)0.0615 (4)
H14A−0.08250.1019−0.05300.092*
H14B−0.06950.1878−0.10670.092*
H14C−0.04640.17860.02990.092*
C150.26488 (14)−0.04112 (8)−0.10362 (12)0.0416 (3)
C160.11252 (17)0.00960 (12)−0.28374 (14)0.0625 (4)
H16A0.1604−0.0203−0.32910.094*
H16B0.08110.0608−0.32210.094*
H16C0.0339−0.0214−0.27850.094*
C170.48307 (18)−0.22850 (8)0.13618 (14)0.0519 (4)
C180.4116 (3)−0.24776 (12)0.2283 (2)0.0821 (6)
H18A0.4305−0.20510.28670.123*
H18B0.4460−0.29860.26620.123*
H18C0.3129−0.25170.19040.123*
C190.6380 (2)−0.21543 (11)0.19263 (19)0.0730 (5)
H19A0.6809−0.20640.13160.109*
H19B0.6783−0.26280.23800.109*
H19C0.6532−0.16880.24410.109*
C200.4601 (3)−0.29789 (10)0.04631 (19)0.0820 (6)
H20A0.3621−0.30740.01170.123*
H20B0.5041−0.34650.08570.123*
H20C0.4998−0.2834−0.01500.123*
O10.54122 (11)0.17100 (6)0.33794 (10)0.0537 (3)
O20.39422 (14)0.21939 (6)0.17376 (11)0.0651 (3)
O30.12113 (11)0.05152 (7)0.12744 (10)0.0568 (3)
O40.11235 (10)0.13887 (6)−0.01951 (10)0.0539 (3)
O50.25835 (12)−0.10881 (7)−0.14909 (9)0.0559 (3)
O60.20492 (12)0.02410 (6)−0.16718 (9)0.0545 (3)
O70.47008 (10)−0.06485 (5)0.21316 (8)0.0433 (2)
N10.41676 (14)−0.15701 (7)0.06458 (11)0.0503 (3)
H10.3803−0.1670−0.01000.060*
U11U22U33U12U13U23
C10.0359 (6)0.0521 (8)0.0470 (7)−0.0020 (5)0.0088 (5)−0.0071 (6)
C20.0439 (7)0.0686 (10)0.0542 (9)−0.0058 (7)0.0069 (7)−0.0172 (8)
C30.0413 (7)0.0934 (13)0.0470 (8)0.0027 (8)0.0019 (6)−0.0133 (9)
C40.0445 (8)0.0835 (12)0.0447 (8)0.0112 (8)0.0060 (6)0.0050 (8)
C50.0423 (7)0.0580 (8)0.0429 (7)0.0057 (6)0.0080 (6)0.0036 (6)
C60.0318 (5)0.0473 (7)0.0406 (7)0.0012 (5)0.0087 (5)0.0000 (5)
C70.0345 (6)0.0359 (6)0.0396 (6)−0.0013 (5)0.0094 (5)−0.0007 (5)
C80.0356 (6)0.0333 (6)0.0412 (6)−0.0016 (5)0.0090 (5)−0.0004 (5)
C90.0456 (7)0.0386 (6)0.0497 (8)−0.0015 (5)0.0096 (6)−0.0031 (6)
C100.0377 (6)0.0314 (5)0.0384 (6)−0.0020 (4)0.0092 (5)0.0047 (5)
C110.0375 (6)0.0330 (5)0.0381 (6)−0.0017 (4)0.0108 (5)0.0002 (5)
C120.0398 (6)0.0333 (6)0.0400 (6)−0.0025 (5)0.0127 (5)0.0004 (5)
C130.0383 (6)0.0323 (6)0.0417 (7)−0.0004 (5)0.0074 (5)0.0020 (5)
C140.0401 (7)0.0598 (9)0.0757 (11)0.0082 (7)0.0047 (7)0.0113 (8)
C150.0404 (6)0.0427 (7)0.0416 (7)−0.0055 (5)0.0126 (5)0.0008 (5)
C160.0517 (8)0.0845 (12)0.0422 (8)−0.0023 (8)0.0013 (6)0.0040 (8)
C170.0706 (9)0.0321 (6)0.0569 (9)0.0052 (6)0.0255 (7)0.0088 (6)
C180.1131 (17)0.0600 (10)0.0932 (15)0.0014 (11)0.0612 (14)0.0179 (10)
C190.0713 (11)0.0536 (9)0.0914 (14)0.0189 (8)0.0212 (10)0.0255 (9)
C200.1286 (19)0.0364 (8)0.0855 (14)0.0102 (10)0.0396 (13)−0.0010 (8)
O10.0546 (6)0.0424 (5)0.0553 (6)−0.0035 (4)0.0039 (5)−0.0106 (5)
O20.0781 (8)0.0363 (5)0.0692 (8)0.0051 (5)0.0054 (6)−0.0007 (5)
O30.0503 (6)0.0632 (7)0.0625 (7)0.0087 (5)0.0255 (5)0.0193 (5)
O40.0411 (5)0.0509 (6)0.0659 (7)0.0077 (4)0.0108 (5)0.0225 (5)
O50.0677 (7)0.0489 (6)0.0474 (6)−0.0022 (5)0.0121 (5)−0.0104 (5)
O60.0598 (6)0.0511 (6)0.0417 (5)−0.0015 (5)−0.0002 (5)0.0038 (4)
O70.0514 (5)0.0332 (4)0.0405 (5)0.0023 (4)0.0074 (4)0.0026 (4)
N10.0667 (8)0.0336 (5)0.0473 (7)0.0054 (5)0.0127 (6)−0.0004 (5)
C1—O11.3703 (18)C13—O41.3245 (15)
C1—C21.389 (2)C14—O41.4380 (18)
C1—C61.3905 (19)C14—H14A0.9600
C2—C31.371 (3)C14—H14B0.9600
C2—H20.9300C14—H14C0.9600
C3—C41.383 (3)C15—O51.2261 (16)
C3—H30.9300C15—O61.3395 (17)
C4—C51.382 (2)C16—O61.4262 (18)
C4—H40.9300C16—H16A0.9600
C5—C61.3962 (19)C16—H16B0.9600
C5—H50.9300C16—H16C0.9600
C6—C71.4392 (18)C17—N11.4797 (18)
C7—C81.3415 (17)C17—C181.514 (2)
C7—O71.3674 (15)C17—C191.514 (3)
C8—C91.4474 (18)C17—C201.525 (2)
C8—C101.4942 (17)C18—H18A0.9600
C9—O21.2016 (17)C18—H18B0.9600
C9—O11.3714 (18)C18—H18C0.9600
C10—C111.5107 (17)C19—H19A0.9600
C10—C131.5335 (17)C19—H19B0.9600
C10—H100.9800C19—H19C0.9600
C11—C121.3719 (17)C20—H20A0.9600
C11—C151.4375 (18)C20—H20B0.9600
C12—N11.3288 (16)C20—H20C0.9600
C12—O71.3733 (16)N1—H10.8600
C13—O31.1948 (16)
O1—C1—C2116.55 (14)H14A—C14—H14B109.5
O1—C1—C6121.84 (12)O4—C14—H14C109.5
C2—C1—C6121.59 (14)H14A—C14—H14C109.5
C3—C2—C1118.49 (16)H14B—C14—H14C109.5
C3—C2—H2120.8O5—C15—O6121.50 (13)
C1—C2—H2120.8O5—C15—C11126.77 (13)
C2—C3—C4121.35 (15)O6—C15—C11111.74 (11)
C2—C3—H3119.3O6—C16—H16A109.5
C4—C3—H3119.3O6—C16—H16B109.5
C5—C4—C3119.97 (16)H16A—C16—H16B109.5
C5—C4—H4120.0O6—C16—H16C109.5
C3—C4—H4120.0H16A—C16—H16C109.5
C4—C5—C6120.02 (15)H16B—C16—H16C109.5
C4—C5—H5120.0N1—C17—C18110.21 (14)
C6—C5—H5120.0N1—C17—C19111.32 (12)
C1—C6—C5118.57 (13)C18—C17—C19111.62 (16)
C1—C6—C7116.46 (12)N1—C17—C20104.32 (13)
C5—C6—C7124.96 (13)C18—C17—C20110.02 (15)
C8—C7—O7122.87 (11)C19—C17—C20109.10 (16)
C8—C7—C6122.11 (12)C17—C18—H18A109.5
O7—C7—C6115.02 (11)C17—C18—H18B109.5
C7—C8—C9119.72 (12)H18A—C18—H18B109.5
C7—C8—C10122.91 (11)C17—C18—H18C109.5
C9—C8—C10117.36 (11)H18A—C18—H18C109.5
O2—C9—O1117.10 (12)H18B—C18—H18C109.5
O2—C9—C8124.86 (13)C17—C19—H19A109.5
O1—C9—C8118.04 (12)C17—C19—H19B109.5
C8—C10—C11109.67 (10)H19A—C19—H19B109.5
C8—C10—C13109.67 (10)C17—C19—H19C109.5
C11—C10—C13110.81 (10)H19A—C19—H19C109.5
C8—C10—H10108.9H19B—C19—H19C109.5
C11—C10—H10108.9C17—C20—H20A109.5
C13—C10—H10108.9C17—C20—H20B109.5
C12—C11—C15119.05 (11)H20A—C20—H20B109.5
C12—C11—C10121.68 (11)C17—C20—H20C109.5
C15—C11—C10119.25 (11)H20A—C20—H20C109.5
N1—C12—C11124.89 (12)H20B—C20—H20C109.5
N1—C12—O7112.99 (11)C1—O1—C9121.69 (11)
C11—C12—O7122.12 (11)C13—O4—C14117.09 (12)
O3—C13—O4124.71 (12)C15—O6—C16117.20 (12)
O3—C13—C10123.67 (11)C7—O7—C12118.42 (10)
O4—C13—C10111.61 (11)C12—N1—C17131.41 (13)
O4—C14—H14A109.5C12—N1—H1114.3
O4—C14—H14B109.5C17—N1—H1114.3
O1—C1—C2—C3177.39 (13)C13—C10—C11—C1569.62 (14)
C6—C1—C2—C3−1.0 (2)C15—C11—C12—N11.5 (2)
C1—C2—C3—C40.4 (2)C10—C11—C12—N1179.80 (12)
C2—C3—C4—C50.5 (3)C15—C11—C12—O7−179.35 (11)
C3—C4—C5—C6−0.8 (2)C10—C11—C12—O7−1.03 (18)
O1—C1—C6—C5−177.67 (12)C8—C10—C13—O3−54.74 (16)
C2—C1—C6—C50.6 (2)C11—C10—C13—O366.48 (17)
O1—C1—C6—C71.41 (19)C8—C10—C13—O4126.41 (12)
C2—C1—C6—C7179.72 (13)C11—C10—C13—O4−112.38 (12)
C4—C5—C6—C10.3 (2)C12—C11—C15—O52.2 (2)
C4—C5—C6—C7−178.70 (13)C10—C11—C15—O5−176.18 (13)
C1—C6—C7—C8−3.39 (18)C12—C11—C15—O6−178.03 (11)
C5—C6—C7—C8175.63 (13)C10—C11—C15—O63.61 (16)
C1—C6—C7—O7176.64 (11)C2—C1—O1—C9−176.45 (13)
C5—C6—C7—O7−4.34 (18)C6—C1—O1—C91.9 (2)
O7—C7—C8—C9−178.01 (11)O2—C9—O1—C1176.14 (13)
C6—C7—C8—C92.02 (19)C8—C9—O1—C1−3.3 (2)
O7—C7—C8—C102.75 (19)O3—C13—O4—C14−7.5 (2)
C6—C7—C8—C10−177.22 (11)C10—C13—O4—C14171.38 (12)
C7—C8—C9—O2−178.08 (14)O5—C15—O6—C1611.0 (2)
C10—C8—C9—O21.2 (2)C11—C15—O6—C16−168.79 (12)
C7—C8—C9—O11.36 (19)C8—C7—O7—C1210.56 (18)
C10—C8—C9—O1−179.36 (11)C6—C7—O7—C12−169.47 (10)
C7—C8—C10—C11−13.49 (16)N1—C12—O7—C7167.98 (11)
C9—C8—C10—C11167.26 (11)C11—C12—O7—C7−11.28 (17)
C7—C8—C10—C13108.41 (13)C11—C12—N1—C17−177.04 (14)
C9—C8—C10—C13−70.84 (14)O7—C12—N1—C173.7 (2)
C8—C10—C11—C1212.52 (16)C18—C17—N1—C1261.5 (2)
C13—C10—C11—C12−108.70 (13)C19—C17—N1—C12−62.9 (2)
C8—C10—C11—C15−169.16 (10)C20—C17—N1—C12179.60 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O50.861.972.6602 (16)136
C19—H19B···O5i0.962.493.4469 (19)174.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O50.861.972.6602 (16)136
C19—H19B⋯O5i0.962.493.4469 (19)174

Symmetry code: (i) .

  5 in total

1.  CENTRAL NERVOUS SYSTEM DEPRESSANTS. VII. PYRIDYL COUMARINS.

Authors:  R B MOFFETT
Journal:  J Med Chem       Date:  1964-07       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  Simple coumarins and analogues in medicinal chemistry: occurrence, synthesis and biological activity.

Authors:  F Borges; F Roleira; N Milhazes; L Santana; E Uriarte
Journal:  Curr Med Chem       Date:  2005       Impact factor: 4.530

4.  5-Hy-droxy-8,8-dimethyl-10-(2-methyl-but-3-en-2-yl)-2H,6H-7,8-dihydro-pyrano[3,2-g]chromene-2,6-dione.

Authors:  Hoong-Kun Fun; Tawanun Sripisut; Surat Laphookhieo; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-15

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  2 in total

1.  rac-Diethyl 5-oxo-2-[(2,4,4-trimethyl-pentan-2-yl)amino]-4,5-dihydro-pyrano[3,2-c]chromene-3,4-dicarboxyl-ate.

Authors:  S Antony Inglebert; K Sethusankar; Yuvaraj Arun; Paramasivam T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14

2.  rac-Dimethyl 5-oxo-2-[(2,4,4-trimethyl-pentan-2-yl)amino]-4,5-dihydro-pyrano[3,2-c]chromene-3,4-dicarboxyl-ate.

Authors:  S Antony Inglebert; Yuvaraj Arun; K Sethusankar; Paramasivam T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-23
  2 in total

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