Literature DB >> 21523091

5-Hy-droxy-8,8-dimethyl-10-(2-methyl-but-3-en-2-yl)-2H,6H-7,8-dihydro-pyrano[3,2-g]chromene-2,6-dione.

Hoong-Kun Fun, Tawanun Sripisut, Surat Laphookhieo, Suchada Chantrapromma.   

Abstract

In the title compound, C(19)H(20)O(5), the pyran ring is in an envelope conformation, whereas the benzene and dihydro-pyran ring system is planar with an r.m.s. deviation of 0.0190 (1) Å. The hy-droxy group is coplanar with the attached benzene ring [r.m.s. deviation = 0.0106 (1) Å]. An intra-molecular O-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked into chains along the b axis by weak C-H⋯O inter-actions. These chains are stacked along the a axis. C-H⋯π and weak π-π inter-actions [centroid-centroid distance = 3.7698 (7) Å] are also observed.

Entities:  

Year:  2011        PMID: 21523091      PMCID: PMC3051790          DOI: 10.1107/S1600536811001565

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶) and for ring conformations, see: Cremer & Pople (1975 ▶). For background to Rutaceae plants, coumarins and their biological activity, see: Kongkathip et al. (2005 ▶); Laphookhieo et al. (2009 ▶); Maneerat et al. (2010 ▶); Huang et al. (1997 ▶); Su et al. (2009 ▶); Tangyuenyongwatthana et al. (1992 ▶); Yenjai et al. (2000 ▶).

Experimental

Crystal data

C19H20O5 M = 328.35 Monoclinic, a = 10.2239 (2) Å b = 11.3090 (3) Å c = 13.8764 (3) Å β = 93.108 (1)° V = 1602.06 (6) Å3 Z = 4 Cu Kα radiation μ = 0.81 mm−1 T = 100 K 0.43 × 0.43 × 0.33 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.721, T max = 0.774 48432 measured reflections 3114 independent reflections 3088 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.147 S = 1.29 3114 reflections 234 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.71 e Å−3 Δρmin = −0.84 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811001565/bq2271sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811001565/bq2271Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20O5F(000) = 696
Mr = 328.35Dx = 1.361 Mg m3
Monoclinic, P21/cMelting point = 410–411 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54178 Å
a = 10.2239 (2) ÅCell parameters from 3114 reflections
b = 11.3090 (3) Åθ = 5.8–72.0°
c = 13.8764 (3) ŵ = 0.81 mm1
β = 93.108 (1)°T = 100 K
V = 1602.06 (6) Å3Block, yellow
Z = 40.43 × 0.43 × 0.33 mm
Bruker APEX DUO CCD area-detector diffractometer3114 independent reflections
Radiation source: sealed tube3088 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 72.0°, θmin = 5.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.721, Tmax = 0.774k = −12→13
48432 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.085P)2 + 0.4129P] where P = (Fo2 + 2Fc2)/3
S = 1.29(Δ/σ)max = 0.001
3114 reflectionsΔρmax = 0.71 e Å3
234 parametersΔρmin = −0.84 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.041 (2)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.24205 (9)1.16069 (8)0.99936 (7)0.0182 (3)
O20.25452 (9)0.76187 (8)0.90044 (6)0.0178 (3)
O30.25906 (11)1.34713 (9)1.04469 (8)0.0251 (3)
O40.01977 (10)0.66004 (9)1.11316 (7)0.0228 (3)
O50.01904 (10)0.87092 (9)1.17530 (7)0.0216 (3)
H1O50.010 (2)0.789 (2)1.1695 (16)0.046 (6)*
C10.20676 (12)1.04507 (12)1.01109 (9)0.0155 (3)
C20.21353 (13)1.25150 (12)1.06206 (10)0.0188 (3)
C30.13341 (13)1.22145 (13)1.14119 (10)0.0201 (3)
H3A0.10831.28021.18330.024*
C40.09493 (13)1.10932 (12)1.15431 (10)0.0186 (3)
H4A0.04401.09121.20590.022*
C50.13116 (12)1.01699 (12)1.09000 (9)0.0164 (3)
C60.09425 (12)0.89887 (12)1.10224 (9)0.0165 (3)
C70.13559 (12)0.81207 (12)1.03860 (9)0.0162 (3)
C80.09306 (12)0.69006 (12)1.04907 (10)0.0180 (3)
C90.13851 (13)0.60284 (12)0.97689 (10)0.0194 (3)
H9A0.07240.59560.92440.023*
H9B0.14900.52601.00740.023*
C100.26803 (14)0.63988 (11)0.93635 (10)0.0183 (3)
C110.21402 (12)0.84528 (12)0.96178 (9)0.0154 (3)
C120.25049 (12)0.96284 (12)0.94385 (9)0.0154 (3)
C130.33249 (13)0.98950 (12)0.85555 (9)0.0176 (3)
C140.45881 (13)0.91792 (13)0.86498 (10)0.0211 (3)
H14A0.50020.91340.92620.025*
C150.51505 (15)0.86207 (14)0.79547 (11)0.0258 (4)
H15A0.473 (2)0.8581 (18)0.7301 (16)0.038 (5)*
H15B0.598 (2)0.8228 (18)0.8085 (14)0.034 (5)*
C160.24997 (13)0.95973 (13)0.76241 (9)0.0204 (3)
H16A0.29770.98120.70730.031*
H16B0.16911.00290.76140.031*
H16C0.23180.87650.76050.031*
C170.37739 (16)1.11907 (13)0.84519 (11)0.0273 (4)
H17A0.42881.12630.78960.041*
H17B0.42931.14190.90190.041*
H17C0.30201.16950.83770.041*
C180.29707 (16)0.56754 (13)0.84802 (11)0.0252 (3)
H18A0.37680.59510.82220.038*
H18B0.22630.57590.80010.038*
H18C0.30650.48580.86580.038*
C190.38167 (14)0.63524 (12)1.01187 (10)0.0213 (3)
H19A0.46030.66150.98370.032*
H19B0.39320.55551.03450.032*
H19C0.36310.68571.06500.032*
U11U22U33U12U13U23
O10.0233 (5)0.0130 (5)0.0188 (5)−0.0003 (4)0.0045 (4)−0.0003 (3)
O20.0241 (5)0.0126 (5)0.0169 (5)0.0009 (4)0.0044 (4)−0.0005 (3)
O30.0334 (6)0.0144 (5)0.0278 (6)−0.0006 (4)0.0039 (4)−0.0006 (4)
O40.0219 (5)0.0208 (5)0.0261 (5)−0.0027 (4)0.0059 (4)0.0046 (4)
O50.0235 (5)0.0213 (6)0.0208 (5)−0.0009 (4)0.0088 (4)0.0018 (4)
C10.0153 (6)0.0140 (6)0.0171 (6)0.0002 (5)−0.0007 (5)0.0011 (5)
C20.0205 (7)0.0156 (7)0.0201 (7)0.0024 (5)−0.0015 (5)−0.0020 (5)
C30.0209 (7)0.0203 (7)0.0191 (7)0.0042 (5)0.0011 (5)−0.0048 (5)
C40.0165 (6)0.0225 (7)0.0168 (6)0.0024 (5)0.0018 (5)−0.0015 (5)
C50.0156 (6)0.0183 (7)0.0153 (6)0.0013 (5)0.0010 (5)0.0002 (5)
C60.0139 (6)0.0210 (7)0.0147 (6)0.0006 (5)0.0012 (5)0.0019 (5)
C70.0154 (6)0.0164 (7)0.0166 (6)0.0001 (5)0.0002 (5)0.0019 (5)
C80.0150 (6)0.0183 (7)0.0204 (7)0.0003 (5)−0.0015 (5)0.0033 (5)
C90.0200 (7)0.0138 (6)0.0242 (7)−0.0017 (5)0.0011 (5)0.0014 (5)
C100.0227 (7)0.0120 (6)0.0206 (7)0.0008 (5)0.0028 (5)0.0009 (5)
C110.0152 (6)0.0161 (7)0.0148 (6)0.0014 (5)−0.0004 (5)−0.0009 (5)
C120.0159 (6)0.0157 (7)0.0147 (6)0.0003 (5)0.0013 (5)0.0007 (5)
C130.0203 (7)0.0170 (7)0.0160 (6)0.0000 (5)0.0052 (5)−0.0003 (5)
C140.0180 (7)0.0267 (7)0.0187 (7)−0.0006 (5)0.0011 (5)0.0007 (5)
C150.0217 (7)0.0305 (8)0.0250 (8)0.0060 (6)0.0003 (6)−0.0025 (6)
C160.0217 (7)0.0233 (7)0.0165 (7)0.0032 (5)0.0030 (5)0.0028 (5)
C170.0376 (9)0.0201 (7)0.0257 (7)−0.0052 (6)0.0160 (6)−0.0010 (6)
C180.0338 (8)0.0174 (7)0.0248 (7)0.0017 (6)0.0048 (6)−0.0037 (5)
C190.0204 (7)0.0199 (7)0.0237 (7)0.0020 (5)0.0028 (5)0.0017 (5)
O1—C11.3685 (16)C10—C181.5164 (19)
O1—C21.3872 (16)C10—C191.5227 (19)
O2—C111.3505 (16)C11—C121.4065 (19)
O2—C101.4708 (15)C12—C131.5513 (17)
O3—C21.2069 (18)C13—C141.5238 (19)
O4—C81.2410 (17)C13—C161.5419 (18)
O5—C61.3430 (16)C13—C171.5445 (18)
O5—H1O50.93 (2)C14—C151.311 (2)
C1—C121.4073 (19)C14—H14A0.9300
C1—C51.4103 (18)C15—H15A0.98 (2)
C2—C31.4456 (19)C15—H15B0.97 (2)
C3—C41.343 (2)C16—H16A0.9600
C3—H3A0.9300C16—H16B0.9600
C4—C51.4352 (18)C16—H16C0.9600
C4—H4A0.9300C17—H17A0.9600
C5—C61.4009 (19)C17—H17B0.9600
C6—C71.4009 (19)C17—H17C0.9600
C7—C111.4189 (18)C18—H18A0.9600
C7—C81.4564 (18)C18—H18B0.9600
C8—C91.4975 (19)C18—H18C0.9600
C9—C101.5253 (19)C19—H19A0.9600
C9—H9A0.9700C19—H19B0.9600
C9—H9B0.9700C19—H19C0.9600
C1—O1—C2124.55 (11)C12—C11—C7123.30 (12)
C11—O2—C10117.90 (10)C11—C12—C1114.24 (12)
C6—O5—H1O5103.0 (14)C11—C12—C13118.90 (11)
O1—C1—C12117.21 (12)C1—C12—C13126.86 (12)
O1—C1—C5117.81 (12)C14—C13—C16112.25 (11)
C12—C1—C5124.97 (13)C14—C13—C17104.91 (11)
O3—C2—O1116.21 (12)C16—C13—C17106.32 (11)
O3—C2—C3127.09 (13)C14—C13—C12108.70 (11)
O1—C2—C3116.70 (12)C16—C13—C12108.97 (11)
C4—C3—C2120.48 (12)C17—C13—C12115.72 (11)
C4—C3—H3A119.8C15—C14—C13126.59 (13)
C2—C3—H3A119.8C15—C14—H14A116.7
C3—C4—C5121.02 (13)C13—C14—H14A116.7
C3—C4—H4A119.5C14—C15—H15A120.7 (12)
C5—C4—H4A119.5C14—C15—H15B120.0 (12)
C6—C5—C1118.12 (12)H15A—C15—H15B119.3 (17)
C6—C5—C4122.55 (12)C13—C16—H16A109.5
C1—C5—C4119.32 (12)C13—C16—H16B109.5
O5—C6—C7121.03 (12)H16A—C16—H16B109.5
O5—C6—C5119.01 (12)C13—C16—H16C109.5
C7—C6—C5119.95 (12)H16A—C16—H16C109.5
C6—C7—C11119.36 (12)H16B—C16—H16C109.5
C6—C7—C8119.95 (12)C13—C17—H17A109.5
C11—C7—C8120.64 (12)C13—C17—H17B109.5
O4—C8—C7121.72 (13)H17A—C17—H17B109.5
O4—C8—C9121.36 (12)C13—C17—H17C109.5
C7—C8—C9116.89 (12)H17A—C17—H17C109.5
C8—C9—C10111.89 (11)H17B—C17—H17C109.5
C8—C9—H9A109.2C10—C18—H18A109.5
C10—C9—H9A109.2C10—C18—H18B109.5
C8—C9—H9B109.2H18A—C18—H18B109.5
C10—C9—H9B109.2C10—C18—H18C109.5
H9A—C9—H9B107.9H18A—C18—H18C109.5
O2—C10—C18104.54 (11)H18B—C18—H18C109.5
O2—C10—C19108.64 (11)C10—C19—H19A109.5
C18—C10—C19111.23 (12)C10—C19—H19B109.5
O2—C10—C9108.37 (11)H19A—C19—H19B109.5
C18—C10—C9111.21 (12)C10—C19—H19C109.5
C19—C10—C9112.46 (11)H19A—C19—H19C109.5
O2—C11—C12117.10 (12)H19B—C19—H19C109.5
O2—C11—C7119.58 (12)
C2—O1—C1—C12−176.20 (11)C11—O2—C10—C19−68.22 (14)
C2—O1—C1—C52.95 (18)C11—O2—C10—C954.25 (14)
C1—O1—C2—O3175.33 (12)C8—C9—C10—O2−52.54 (14)
C1—O1—C2—C3−4.33 (18)C8—C9—C10—C18−166.91 (11)
O3—C2—C3—C4−176.61 (14)C8—C9—C10—C1967.58 (14)
O1—C2—C3—C43.01 (19)C10—O2—C11—C12154.89 (11)
C2—C3—C4—C5−0.5 (2)C10—O2—C11—C7−26.57 (16)
O1—C1—C5—C6179.76 (11)C6—C7—C11—O2179.76 (11)
C12—C1—C5—C6−1.2 (2)C8—C7—C11—O2−3.05 (18)
O1—C1—C5—C4−0.19 (18)C6—C7—C11—C12−1.79 (19)
C12—C1—C5—C4178.89 (12)C8—C7—C11—C12175.40 (11)
C3—C4—C5—C6179.13 (12)O2—C11—C12—C1−179.17 (10)
C3—C4—C5—C1−0.9 (2)C7—C11—C12—C12.35 (19)
C1—C5—C6—O5−178.07 (11)O2—C11—C12—C130.61 (17)
C4—C5—C6—O51.87 (19)C7—C11—C12—C13−177.87 (11)
C1—C5—C6—C71.80 (19)O1—C1—C12—C11178.22 (10)
C4—C5—C6—C7−178.26 (11)C5—C1—C12—C11−0.87 (19)
O5—C6—C7—C11179.45 (11)O1—C1—C12—C13−1.54 (19)
C5—C6—C7—C11−0.42 (19)C5—C1—C12—C13179.37 (12)
O5—C6—C7—C82.24 (19)C11—C12—C13—C14−57.89 (15)
C5—C6—C7—C8−177.63 (11)C1—C12—C13—C14121.86 (14)
C6—C7—C8—O40.37 (19)C11—C12—C13—C1664.73 (15)
C11—C7—C8—O4−176.81 (12)C1—C12—C13—C16−115.52 (14)
C6—C7—C8—C9178.52 (11)C11—C12—C13—C17−175.57 (12)
C11—C7—C8—C91.35 (18)C1—C12—C13—C174.2 (2)
O4—C8—C9—C10−154.56 (12)C16—C13—C14—C1518.3 (2)
C7—C8—C9—C1027.28 (16)C17—C13—C14—C15−96.71 (17)
C11—O2—C10—C18172.93 (11)C12—C13—C14—C15138.93 (16)
Cg1 is the centroid of the C1–C5/O1ring.
D—H···AD—HH···AD···AD—H···A
O5—H1O5···O40.93 (2)1.66 (2)2.5361 (14)155 (2)
C9—H9B···O3i0.972.363.2621 (17)155
C16—H16B···O5ii0.962.593.4982 (17)159
C16—H16C···O20.962.342.9441 (16)121
C15—H15B···Cg1iii0.97 (2)2.83 (2)3.5908 (16)136.7 (15)
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C5/O1ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H1O5⋯O40.93 (2)1.66 (2)2.5361 (14)155 (2)
C9—H9B⋯O3i0.972.363.2621 (17)155
C16—H16B⋯O5ii0.962.593.4982 (17)159
C16—H16C⋯O20.962.342.9441 (16)121
C15—H15BCg1iii0.97 (2)2.83 (2)3.5908 (16)136.7 (15)

Symmetry codes: (i) ; (ii) ; (iii) .

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