Literature DB >> 22798846

rac-Dimethyl 5-oxo-2-[(2,4,4-trimethyl-pentan-2-yl)amino]-4,5-dihydro-pyrano[3,2-c]chromene-3,4-dicarboxyl-ate.

S Antony Inglebert, Yuvaraj Arun, K Sethusankar, Paramasivam T Perumal.   

Abstract

The title compound, C(24)H(29)NO(7), is asymmetric with a chiral centre located in the pyran ring and crystallizes as a racemate. The coumarin ring system and the fused pyran ring make a dihedral angle of 10.46 (8)°. A short intra-molecular N-H⋯O hydrogen bond between the amino group and the vicinal carbonyl group generates an S(6) ring. Inter-molecular C-H⋯O inter-actions contribute to the stability of the crystal structure.

Entities:  

Year:  2012        PMID: 22798846      PMCID: PMC3393981          DOI: 10.1107/S1600536812027596

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyran­ocoumarin compounds, see: Kawaii et al. (2001 ▶); Goel et al. (1997 ▶); Xu et al. (2006 ▶). For a similar compound, see: Inglebert et al. (2011 ▶). For bond-angle distortions, see: Chinnakali et al. (1998 ▶); Kumar et al. (1997 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C24H29NO7 M = 443.48 Monoclinic, a = 22.0329 (17) Å b = 11.8675 (8) Å c = 18.4861 (14) Å β = 107.946 (4)° V = 4598.5 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.35 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.972, T max = 0.981 17657 measured reflections 3384 independent reflections 2623 reflections with I > 2σ(I) R int = 0.035 θmax = 23.5°

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.130 S = 1.01 3384 reflections 296 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812027596/fy2059sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812027596/fy2059Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812027596/fy2059Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H29NO7F(000) = 1888
Mr = 443.48Dx = 1.281 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3384 reflections
a = 22.0329 (17) Åθ = 2.1–23.5°
b = 11.8675 (8) ŵ = 0.09 mm1
c = 18.4861 (14) ÅT = 293 K
β = 107.946 (4)°Block, colourless
V = 4598.5 (6) Å30.35 × 0.25 × 0.20 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer3384 independent reflections
Radiation source: fine-focus sealed tube2623 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
ω and φ scanθmax = 23.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −24→24
Tmin = 0.972, Tmax = 0.981k = −13→13
17657 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0745P)2 + 2.5421P] where P = (Fo2 + 2Fc2)/3
3384 reflections(Δ/σ)max < 0.001
296 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.07781 (10)0.65241 (18)0.08539 (12)0.0434 (5)
C20.01923 (11)0.6706 (2)0.09593 (14)0.0580 (6)
H2−0.01630.62910.06900.070*
C30.01469 (13)0.7514 (3)0.14700 (16)0.0707 (8)
H3−0.02450.76490.15450.085*
C40.06739 (12)0.8128 (2)0.18737 (15)0.0666 (7)
H40.06340.86690.22200.080*
C50.12543 (11)0.7948 (2)0.17689 (13)0.0538 (6)
H50.16070.83670.20420.065*
C60.13161 (10)0.71310 (18)0.12499 (12)0.0411 (5)
C70.18985 (9)0.68570 (17)0.10922 (11)0.0362 (5)
C80.19380 (9)0.60197 (16)0.06255 (11)0.0356 (5)
C90.13680 (10)0.54036 (18)0.02177 (12)0.0408 (5)
C100.25577 (9)0.56956 (16)0.05062 (11)0.0359 (5)
H100.24860.5539−0.00340.043*
C110.30259 (9)0.66519 (16)0.07534 (10)0.0347 (5)
C120.29355 (9)0.74938 (16)0.12167 (11)0.0348 (5)
C130.28234 (10)0.46404 (17)0.09713 (13)0.0413 (5)
C140.31163 (16)0.2746 (2)0.09316 (18)0.0842 (9)
H14A0.35330.29050.12760.126*
H14B0.31500.21900.05690.126*
H14C0.28470.24650.12120.126*
C150.36146 (10)0.66180 (18)0.05798 (11)0.0412 (5)
C160.42747 (14)0.5498 (2)0.0079 (2)0.0802 (9)
H16A0.43910.6164−0.01410.120*
H16B0.42440.4873−0.02600.120*
H16C0.45940.53410.05550.120*
C170.33589 (10)0.91740 (17)0.20939 (12)0.0419 (5)
C180.27751 (13)0.99465 (19)0.18546 (14)0.0598 (7)
H18A0.27321.02570.13620.090*
H18B0.28271.05460.22170.090*
H18C0.24000.95210.18350.090*
C190.39446 (13)0.9891 (2)0.21481 (15)0.0643 (7)
H19A0.43140.94150.22500.096*
H19B0.40051.04290.25520.096*
H19C0.38851.02820.16760.096*
C200.33782 (10)0.85921 (18)0.28459 (11)0.0442 (5)
H20A0.33670.91900.31990.053*
H20B0.29790.81860.27460.053*
C210.39048 (12)0.7775 (2)0.32812 (13)0.0598 (7)
C220.4003 (2)0.6793 (3)0.28107 (18)0.1349 (19)
H22A0.36020.64250.25790.202*
H22B0.42960.62680.31320.202*
H22C0.41730.70600.24220.202*
C230.45323 (14)0.8378 (3)0.36641 (19)0.1006 (11)
H23A0.48090.78890.40350.151*
H23B0.44510.90490.39090.151*
H23C0.47330.85770.32890.151*
C240.3680 (2)0.7316 (3)0.39292 (19)0.1155 (13)
H24A0.32930.68940.37210.173*
H24B0.36020.79320.42250.173*
H24C0.40030.68340.42470.173*
N10.33318 (8)0.83453 (14)0.14823 (9)0.0427 (4)
H10.36210.84320.12640.051*
O10.08075 (6)0.56951 (12)0.03460 (8)0.0464 (4)
O20.13476 (7)0.46490 (13)−0.02235 (9)0.0550 (4)
O30.24034 (6)0.75349 (12)0.14530 (8)0.0416 (4)
O40.29947 (10)0.46127 (14)0.16463 (10)0.0717 (6)
O50.28442 (8)0.37646 (12)0.05382 (9)0.0620 (5)
O60.40352 (7)0.73256 (13)0.07379 (9)0.0530 (4)
O70.36707 (8)0.56715 (13)0.02049 (10)0.0614 (5)
U11U22U33U12U13U23
C10.0370 (13)0.0505 (13)0.0409 (12)−0.0018 (10)0.0096 (9)0.0054 (11)
C20.0359 (13)0.0777 (17)0.0587 (15)−0.0055 (12)0.0120 (11)0.0052 (14)
C30.0436 (15)0.099 (2)0.0752 (18)0.0093 (15)0.0270 (13)−0.0021 (17)
C40.0557 (17)0.0817 (18)0.0679 (17)0.0057 (14)0.0272 (14)−0.0140 (14)
C50.0436 (14)0.0648 (15)0.0543 (14)−0.0019 (12)0.0168 (11)−0.0102 (12)
C60.0349 (12)0.0460 (12)0.0417 (12)0.0010 (10)0.0108 (9)0.0014 (10)
C70.0315 (11)0.0392 (11)0.0345 (11)−0.0039 (9)0.0052 (8)0.0002 (9)
C80.0345 (12)0.0339 (11)0.0355 (11)−0.0043 (9)0.0067 (9)0.0021 (9)
C90.0393 (13)0.0406 (12)0.0399 (12)−0.0048 (10)0.0086 (9)0.0051 (10)
C100.0366 (11)0.0358 (11)0.0345 (11)−0.0039 (9)0.0098 (9)−0.0032 (9)
C110.0337 (11)0.0332 (11)0.0358 (10)−0.0038 (9)0.0087 (9)−0.0006 (9)
C120.0318 (11)0.0360 (11)0.0346 (11)−0.0026 (9)0.0075 (9)0.0006 (9)
C130.0381 (12)0.0374 (12)0.0474 (14)−0.0037 (9)0.0117 (10)−0.0030 (10)
C140.096 (2)0.0413 (14)0.102 (2)0.0201 (15)0.0102 (18)−0.0025 (14)
C150.0416 (13)0.0395 (12)0.0424 (12)−0.0045 (11)0.0128 (10)−0.0022 (10)
C160.0652 (18)0.0710 (18)0.123 (3)−0.0001 (15)0.0564 (18)−0.0253 (17)
C170.0446 (13)0.0368 (11)0.0428 (12)−0.0036 (10)0.0111 (10)−0.0089 (9)
C180.0705 (17)0.0421 (13)0.0578 (14)0.0103 (12)0.0064 (12)−0.0015 (11)
C190.0749 (18)0.0552 (15)0.0645 (15)−0.0293 (13)0.0243 (14)−0.0208 (12)
C200.0428 (13)0.0444 (12)0.0423 (12)0.0008 (10)0.0086 (10)−0.0074 (10)
C210.0651 (17)0.0523 (14)0.0490 (14)0.0163 (12)−0.0016 (12)−0.0029 (11)
C220.192 (4)0.088 (2)0.079 (2)0.089 (3)−0.025 (2)−0.0216 (19)
C230.060 (2)0.117 (3)0.101 (2)0.0290 (18)−0.0102 (17)−0.010 (2)
C240.153 (4)0.099 (3)0.079 (2)0.022 (2)0.014 (2)0.038 (2)
N10.0449 (11)0.0427 (10)0.0434 (10)−0.0124 (9)0.0178 (8)−0.0107 (8)
O10.0352 (9)0.0525 (9)0.0489 (9)−0.0083 (7)0.0090 (7)−0.0021 (7)
O20.0519 (10)0.0524 (10)0.0580 (10)−0.0149 (8)0.0129 (8)−0.0181 (8)
O30.0341 (8)0.0466 (8)0.0442 (8)−0.0070 (7)0.0125 (6)−0.0120 (7)
O40.1079 (15)0.0542 (10)0.0471 (11)0.0141 (10)0.0153 (10)0.0083 (8)
O50.0769 (12)0.0363 (9)0.0641 (10)0.0097 (8)0.0087 (9)−0.0089 (8)
O60.0446 (9)0.0528 (9)0.0674 (10)−0.0145 (8)0.0259 (8)−0.0139 (8)
O70.0536 (10)0.0524 (10)0.0898 (12)−0.0100 (8)0.0391 (9)−0.0266 (9)
C1—O11.375 (3)C15—O71.345 (3)
C1—C21.380 (3)C16—O71.434 (3)
C1—C61.388 (3)C16—H16A0.9600
C2—C31.370 (4)C16—H16B0.9600
C2—H20.9300C16—H16C0.9600
C3—C41.379 (4)C17—N11.486 (3)
C3—H30.9300C17—C191.523 (3)
C4—C51.368 (3)C17—C181.530 (3)
C4—H40.9300C17—C201.541 (3)
C5—C61.400 (3)C18—H18A0.9600
C5—H50.9300C18—H18B0.9600
C6—C71.438 (3)C18—H18C0.9600
C7—C81.336 (3)C19—H19A0.9600
C7—O31.368 (2)C19—H19B0.9600
C8—C91.448 (3)C19—H19C0.9600
C8—C101.499 (3)C20—C211.535 (3)
C9—O21.203 (2)C20—H20A0.9700
C9—O11.372 (3)C20—H20B0.9700
C10—C111.507 (3)C21—C221.510 (4)
C10—C131.530 (3)C21—C231.524 (4)
C10—H100.9800C21—C241.531 (4)
C11—C121.370 (3)C22—H22A0.9600
C11—C151.429 (3)C22—H22B0.9600
C12—N11.327 (2)C22—H22C0.9600
C12—O31.372 (2)C23—H23A0.9600
C13—O41.188 (3)C23—H23B0.9600
C13—O51.321 (2)C23—H23C0.9600
C14—O51.443 (3)C24—H24A0.9600
C14—H14A0.9600C24—H24B0.9600
C14—H14B0.9600C24—H24C0.9600
C14—H14C0.9600N1—H10.8600
C15—O61.217 (2)
O1—C1—C2116.82 (19)H16B—C16—H16C109.5
O1—C1—C6121.28 (18)N1—C17—C19104.75 (17)
C2—C1—C6121.9 (2)N1—C17—C18110.10 (17)
C3—C2—C1118.5 (2)C19—C17—C18107.69 (19)
C3—C2—H2120.8N1—C17—C20111.92 (16)
C1—C2—H2120.8C19—C17—C20113.81 (18)
C2—C3—C4121.0 (2)C18—C17—C20108.45 (18)
C2—C3—H3119.5C17—C18—H18A109.5
C4—C3—H3119.5C17—C18—H18B109.5
C5—C4—C3120.6 (2)H18A—C18—H18B109.5
C5—C4—H4119.7C17—C18—H18C109.5
C3—C4—H4119.7H18A—C18—H18C109.5
C4—C5—C6119.9 (2)H18B—C18—H18C109.5
C4—C5—H5120.1C17—C19—H19A109.5
C6—C5—H5120.1C17—C19—H19B109.5
C1—C6—C5118.2 (2)H19A—C19—H19B109.5
C1—C6—C7116.52 (19)C17—C19—H19C109.5
C5—C6—C7125.24 (19)H19A—C19—H19C109.5
C8—C7—O3123.17 (18)H19B—C19—H19C109.5
C8—C7—C6122.59 (18)C21—C20—C17124.20 (19)
O3—C7—C6114.24 (17)C21—C20—H20A106.3
C7—C8—C9119.55 (19)C17—C20—H20A106.3
C7—C8—C10121.96 (17)C21—C20—H20B106.3
C9—C8—C10118.50 (17)C17—C20—H20B106.3
O2—C9—O1117.22 (18)H20A—C20—H20B106.4
O2—C9—C8125.0 (2)C22—C21—C23111.1 (3)
O1—C9—C8117.73 (19)C22—C21—C24108.3 (3)
C8—C10—C11109.38 (16)C23—C21—C24105.7 (3)
C8—C10—C13109.61 (16)C22—C21—C20113.9 (2)
C11—C10—C13109.78 (16)C23—C21—C20112.2 (2)
C8—C10—H10109.4C24—C21—C20105.1 (2)
C11—C10—H10109.4C21—C22—H22A109.5
C13—C10—H10109.4C21—C22—H22B109.5
C12—C11—C15118.54 (17)H22A—C22—H22B109.5
C12—C11—C10121.39 (17)C21—C22—H22C109.5
C15—C11—C10119.64 (17)H22A—C22—H22C109.5
N1—C12—C11125.51 (18)H22B—C22—H22C109.5
N1—C12—O3112.61 (16)C21—C23—H23A109.5
C11—C12—O3121.87 (17)C21—C23—H23B109.5
O4—C13—O5123.8 (2)H23A—C23—H23B109.5
O4—C13—C10123.77 (19)C21—C23—H23C109.5
O5—C13—C10112.47 (18)H23A—C23—H23C109.5
O5—C14—H14A109.5H23B—C23—H23C109.5
O5—C14—H14B109.5C21—C24—H24A109.5
H14A—C14—H14B109.5C21—C24—H24B109.5
O5—C14—H14C109.5H24A—C24—H24B109.5
H14A—C14—H14C109.5C21—C24—H24C109.5
H14B—C14—H14C109.5H24A—C24—H24C109.5
O6—C15—O7121.03 (19)H24B—C24—H24C109.5
O6—C15—C11127.07 (19)C12—N1—C17130.79 (17)
O7—C15—C11111.89 (18)C12—N1—H1114.6
O7—C16—H16A109.5C17—N1—H1114.6
O7—C16—H16B109.5C9—O1—C1122.20 (16)
H16A—C16—H16B109.5C7—O3—C12118.03 (15)
O7—C16—H16C109.5C13—O5—C14116.13 (19)
H16A—C16—H16C109.5C15—O7—C16116.12 (18)
O1—C1—C2—C3179.0 (2)C15—C11—C12—O3−175.20 (17)
C6—C1—C2—C30.1 (3)C10—C11—C12—O3−2.7 (3)
C1—C2—C3—C4−0.4 (4)C8—C10—C13—O4−65.5 (3)
C2—C3—C4—C50.4 (4)C11—C10—C13—O454.7 (3)
C3—C4—C5—C6−0.2 (4)C8—C10—C13—O5114.86 (19)
O1—C1—C6—C5−178.78 (19)C11—C10—C13—O5−124.98 (18)
C2—C1—C6—C50.0 (3)C12—C11—C15—O6−7.8 (3)
O1—C1—C6—C70.8 (3)C10—C11—C15—O6179.6 (2)
C2—C1—C6—C7179.6 (2)C12—C11—C15—O7171.88 (18)
C4—C5—C6—C10.0 (3)C10—C11—C15—O7−0.7 (3)
C4—C5—C6—C7−179.6 (2)N1—C17—C20—C2160.1 (3)
C1—C6—C7—C8−3.9 (3)C19—C17—C20—C21−58.4 (3)
C5—C6—C7—C8175.7 (2)C18—C17—C20—C21−178.2 (2)
C1—C6—C7—O3175.31 (17)C17—C20—C21—C22−55.2 (4)
C5—C6—C7—O3−5.1 (3)C17—C20—C21—C2372.1 (3)
O3—C7—C8—C9−174.87 (17)C17—C20—C21—C24−173.5 (2)
C6—C7—C8—C94.3 (3)C11—C12—N1—C17−166.6 (2)
O3—C7—C8—C104.9 (3)O3—C12—N1—C1713.7 (3)
C6—C7—C8—C10−175.94 (18)C19—C17—N1—C12177.1 (2)
C7—C8—C9—O2178.8 (2)C18—C17—N1—C12−67.3 (3)
C10—C8—C9—O2−0.9 (3)C20—C17—N1—C1253.4 (3)
C7—C8—C9—O1−1.6 (3)O2—C9—O1—C1178.21 (18)
C10—C8—C9—O1178.63 (16)C8—C9—O1—C1−1.4 (3)
C7—C8—C10—C11−19.0 (2)C2—C1—O1—C9−177.13 (18)
C9—C8—C10—C11160.78 (17)C6—C1—O1—C91.7 (3)
C7—C8—C10—C13101.4 (2)C8—C7—O3—C1212.7 (3)
C9—C8—C10—C13−78.8 (2)C6—C7—O3—C12−166.56 (16)
C8—C10—C11—C1217.8 (2)N1—C12—O3—C7166.09 (16)
C13—C10—C11—C12−102.5 (2)C11—C12—O3—C7−13.6 (3)
C8—C10—C11—C15−169.79 (17)O4—C13—O5—C14−2.4 (3)
C13—C10—C11—C1569.9 (2)C10—C13—O5—C14177.3 (2)
C15—C11—C12—N15.2 (3)O6—C15—O7—C166.4 (3)
C10—C11—C12—N1177.64 (18)C11—C15—O7—C16−173.3 (2)
D—H···AD—HH···AD···AD—H···A
C19—H19C···O2i0.962.583.458 (3)153
C23—H23A···O6ii0.962.543.255 (4)131
C23—H23B···O1iii0.962.553.509 (4)174
N1—H1···O60.862.012.660 (2)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C19—H19C⋯O2i 0.962.583.458 (3)153
C23—H23A⋯O6ii 0.962.543.255 (4)131
C23—H23B⋯O1iii 0.962.553.509 (4)174
N1—H1⋯O60.862.012.660 (2)131

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Pyranocoumarin, a novel anti-TB pharmacophore: synthesis and biological evaluation against Mycobacterium tuberculosis.

Authors:  Ze-Qi Xu; Krzysztof Pupek; William J Suling; Livia Enache; Michael T Flavin
Journal:  Bioorg Med Chem       Date:  2006-03-02       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Antiproliferative effect of isopentenylated coumarins on several cancer cell lines.

Authors:  S Kawaii; Y Tomono; K Ogawa; M Sugiura; M Yano; Y Yoshizawa; C Ito; H Furukawa
Journal:  Anticancer Res       Date:  2001 May-Jun       Impact factor: 2.480

4.  Antiulcer activity of naturally occurring pyrano-coumarin and isocoumarins and their effect on prostanoid synthesis using human colonic mucosa.

Authors:  R K Goel; R N Maiti; M Manickam; A B Ray
Journal:  Indian J Exp Biol       Date:  1997-10       Impact factor: 0.818

5.  rac-Dimethyl 2-(tert-butyl-amino)-5-oxo-4,5-dihydro-pyrano[3,2-c]chromene-3,4-dicarboxyl-ate.

Authors:  S Antony Inglebert; K Sethusankar; Yuvaraj Arun; Paramasivam T Perumal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-12

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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