Literature DB >> 22219912

2-Amino-4-phenyl-5,6-dihydro-benzo[h]quinoline-3-carbonitrile-3-amino-1-phenyl-9,10-dihydro-phenanthrene-2,4-dicarbonitrile (5/3).

Abdullah M Asiri, Abdulrahman O Al-Youbi, Hassan M Faidallah, Seik Weng Ng.   

Abstract

The asymmetric unit of the 5:3 title co-crystal of 2-amino-4-phenyl-5,6-dihydro-benzo[h]quinoline-3-carbonitrile and 3-amino-1-phenyl-9,10-dihydro-phenanthrene-2,4-din class="Chemical">carbonitrile, 0.625C(20)H(15)N(3).0.375C(22)H(15)N(3), has the atoms of the fused-ring system and those of the amino, cyano and phenyl substitutents overlapped. The fused-ring system is buckled owing to the ethyl-ene linkage in the central ring, the two flanking aromatic rings being twisted by 20.1 (1)°. This ethyl-ene portion is disordered over two positions in a 1:1 ratio. The phenyl ring is twisted by 69.5 (1)° relative to the amino- and cyano-bearing aromatic ring. In the crystal, two mol-ecules are linked by an N-H⋯N hydrogen bond, generating a a helical chain along [010].

Entities:  

Year:  2011        PMID: 22219912      PMCID: PMC3247607          DOI: 10.1107/S1600536811040505

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Aly et al. (1991 ▶); Paul et al. (1998 ▶). For related structures, see: Asiri et al. (2011a ▶,b ▶).

Experimental

Crystal data

0.625C20H15N3·0.375C22H15N3 M = 306.36 Orthorhombic, a = 6.9611 (2) Å b = 12.6093 (2) Å c = 17.4933 (3) Å V = 1535.47 (6) Å3 Z = 4 Cu Kα radiation μ = 0.62 mm−1 T = 100 K 0.30 × 0.20 × 0.02 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.835, T max = 0.988 6293 measured reflections 1794 independent reflections 1707 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.119 S = 1.05 1794 reflections 240 parameters 24 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811040505/zs2145sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811040505/zs2145Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811040505/zs2145Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
0.625C20H15N3·0.375C22H15N3F(000) = 642
Mr = 306.36Dx = 1.325 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 3717 reflections
a = 6.9611 (2) Åθ = 3.5–74.3°
b = 12.6093 (2) ŵ = 0.62 mm1
c = 17.4933 (3) ÅT = 100 K
V = 1535.47 (6) Å3Plate, brown-orange
Z = 40.30 × 0.20 × 0.02 mm
Agilent SuperNova Dual diffractometer with an Atlas detector1794 independent reflections
Radiation source: SuperNova (Cu) X-ray Source1707 reflections with I > 2σ(I)
MirrorRint = 0.018
Detector resolution: 10.4041 pixels mm-1θmax = 74.5°, θmin = 4.3°
ω scansh = −8→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −13→15
Tmin = 0.835, Tmax = 0.988l = −21→20
6293 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0796P)2 + 0.2871P] where P = (Fo2 + 2Fc2)/3
1794 reflections(Δ/σ)max = 0.001
240 parametersΔρmax = 0.19 e Å3
24 restraintsΔρmin = −0.23 e Å3
xyzUiso*/UeqOcc. (<1)
N10.9898 (3)0.26050 (14)1.05516 (10)0.0294 (4)0.625
C1'0.9898 (3)0.26050 (14)1.05516 (10)0.0294 (4)0.375
N21.0082 (3)0.28041 (13)1.18789 (10)0.0339 (4)
H11.035 (5)0.3483 (10)1.1827 (17)0.052 (8)*
H21.031 (4)0.254 (2)1.2335 (9)0.045 (8)*
N30.9475 (4)0.02407 (14)1.26992 (10)0.0396 (5)
C10.9186 (4)−0.07603 (16)1.08021 (11)0.0369 (5)
C21.0684 (4)−0.13801 (17)1.10772 (12)0.0414 (6)
H2A1.1883−0.10631.12000.050*
C31.0422 (5)−0.24706 (17)1.11721 (12)0.0463 (7)
H31.1450−0.28961.13550.056*
C40.8687 (5)−0.29307 (17)1.10017 (12)0.0500 (8)
H40.8513−0.36711.10750.060*
C50.7187 (5)−0.23191 (18)1.07229 (14)0.0521 (7)
H50.5990−0.26411.06030.063*
C60.7439 (5)−0.12301 (18)1.06183 (13)0.0478 (6)
H60.6418−0.08111.04220.057*
C70.9453 (4)0.04111 (15)1.06991 (11)0.0336 (5)
C80.9536 (4)0.08663 (16)0.99730 (11)0.0391 (6)
C90.9790 (10)0.0170 (5)0.9251 (4)0.0390 (15)0.50
H9A1.0343−0.05250.93960.047*0.50
H9B0.85240.00430.90100.047*0.50
C101.1119 (9)0.0727 (5)0.8684 (3)0.0440 (15)0.50
H10A1.12160.03100.82060.053*0.50
H10B1.24220.08010.89050.053*0.50
C9'0.9024 (9)0.0270 (5)0.9245 (4)0.0390 (15)0.50
H9'C0.9220−0.05000.93220.047*0.50
H9'D0.76560.03900.91170.047*0.50
C10'1.0290 (10)0.0659 (5)0.8592 (3)0.0440 (15)0.50
H10C1.16280.04260.86830.053*0.50
H10D0.98470.03350.81080.053*0.50
C111.0247 (5)0.18419 (19)0.85163 (13)0.0485 (7)
C121.0305 (5)0.2290 (2)0.77912 (15)0.0561 (7)
H121.06080.18590.73620.067*
C130.9929 (5)0.3351 (3)0.76887 (17)0.0606 (8)
H130.99630.36510.71910.073*
C140.9497 (5)0.3981 (3)0.8318 (2)0.0699 (10)
H140.92460.47160.82500.084*
C150.9431 (5)0.3542 (2)0.90409 (18)0.0593 (9)
H150.91340.39760.94690.071*
C160.9798 (4)0.24669 (16)0.91469 (12)0.0355 (5)
C170.9738 (3)0.19760 (15)0.99194 (12)0.0331 (5)
C180.9871 (3)0.21628 (14)1.12653 (11)0.0281 (4)
C190.9622 (3)0.10550 (15)1.13457 (11)0.0291 (4)
C200.9531 (4)0.05995 (15)1.20987 (11)0.0308 (5)
N41.0072 (11)0.4629 (4)1.0526 (3)0.0471 (15)0.375
C210.9965 (10)0.3721 (4)1.0492 (3)0.0337 (12)0.375
U11U22U33U12U13U23
N10.0427 (10)0.0207 (8)0.0249 (8)0.0010 (8)0.0045 (8)0.0015 (7)
C1'0.0427 (10)0.0207 (8)0.0249 (8)0.0010 (8)0.0045 (8)0.0015 (7)
N20.0607 (12)0.0210 (7)0.0200 (7)−0.0002 (9)−0.0011 (8)−0.0010 (6)
N30.0672 (14)0.0253 (8)0.0263 (8)0.0000 (9)−0.0015 (9)0.0044 (7)
C10.0703 (16)0.0214 (9)0.0189 (8)−0.0041 (10)−0.0016 (10)0.0008 (7)
C20.0705 (16)0.0260 (10)0.0277 (9)0.0011 (11)−0.0012 (11)−0.0002 (8)
C30.087 (2)0.0257 (10)0.0259 (10)0.0058 (12)0.0027 (12)0.0009 (8)
C40.106 (2)0.0201 (9)0.0239 (10)−0.0060 (13)0.0035 (12)0.0016 (8)
C50.089 (2)0.0300 (10)0.0370 (12)−0.0174 (13)−0.0096 (13)0.0029 (10)
C60.0785 (18)0.0283 (10)0.0365 (11)−0.0092 (12)−0.0159 (13)0.0053 (9)
C70.0539 (13)0.0211 (9)0.0258 (9)−0.0025 (9)−0.0007 (10)0.0002 (8)
C80.0704 (16)0.0228 (9)0.0241 (9)−0.0043 (11)−0.0002 (11)0.0017 (8)
C90.069 (4)0.0245 (14)0.0237 (10)0.001 (3)−0.002 (3)0.0004 (10)
C100.082 (5)0.0283 (13)0.0211 (15)−0.013 (3)−0.001 (2)−0.0071 (11)
C9'0.069 (4)0.0245 (14)0.0237 (10)0.001 (3)−0.002 (3)0.0004 (10)
C10'0.082 (5)0.0283 (13)0.0211 (15)−0.013 (3)−0.001 (2)−0.0071 (11)
C110.0804 (19)0.0357 (11)0.0293 (11)−0.0080 (14)0.0008 (12)0.0083 (9)
C120.080 (2)0.0562 (15)0.0321 (12)−0.0134 (16)0.0003 (13)0.0126 (11)
C130.0538 (14)0.0720 (19)0.0559 (16)0.0019 (16)0.0020 (14)0.0404 (15)
C140.0675 (19)0.0549 (16)0.087 (2)0.0299 (16)0.0384 (18)0.0452 (16)
C150.0674 (18)0.0408 (13)0.0698 (18)0.0201 (14)0.0372 (16)0.0274 (13)
C160.0429 (11)0.0291 (10)0.0347 (11)0.0004 (10)0.0053 (9)0.0096 (9)
C170.0456 (11)0.0240 (9)0.0297 (10)0.0003 (10)0.0041 (10)0.0026 (8)
C180.0405 (11)0.0215 (8)0.0224 (9)0.0005 (9)0.0001 (8)−0.0002 (7)
C190.0432 (11)0.0224 (9)0.0218 (9)−0.0005 (9)0.0001 (9)0.0028 (7)
C200.0480 (12)0.0195 (8)0.0249 (9)−0.0013 (9)−0.0017 (9)−0.0011 (7)
N40.094 (5)0.021 (2)0.026 (2)−0.002 (3)0.001 (3)−0.0014 (18)
C210.055 (3)0.027 (3)0.018 (2)0.003 (3)0.005 (2)−0.0001 (19)
N1—C171.366 (3)C9—H9B0.9900
N1—C181.367 (2)C10—C111.560 (7)
N2—C181.352 (2)C10—H10A0.9900
N2—H10.88 (1)C10—H10B0.9900
N2—H20.88 (1)C9'—C10'1.523 (7)
N3—C201.144 (3)C9'—H9'C0.9900
C1—C61.391 (4)C9'—H9'D0.9900
C1—C21.389 (4)C10'—C111.498 (7)
C1—C71.499 (3)C10'—H10C0.9900
C2—C31.397 (3)C10'—H10D0.9900
C2—H2A0.9500C11—C121.389 (3)
C3—C41.373 (4)C11—C161.391 (3)
C3—H30.9500C12—C131.375 (4)
C4—C51.387 (4)C12—H120.9500
C4—H40.9500C13—C141.390 (5)
C5—C61.396 (3)C13—H130.9500
C5—H50.9500C14—C151.382 (4)
C6—H60.9500C14—H140.9500
C7—C191.397 (3)C15—C161.392 (3)
C7—C81.395 (3)C15—H150.9500
C8—C171.410 (3)C16—C171.487 (3)
C8—C9'1.521 (7)C18—C191.415 (2)
C8—C91.548 (7)C19—C201.438 (3)
C9—C101.527 (7)N4—C211.149 (7)
C9—H9A0.9900
C17—N1—C18120.11 (16)C10'—C9'—C8109.5 (4)
C18—N2—H1122 (2)C10'—C9'—H9'C109.8
C18—N2—H2120.8 (19)C8—C9'—H9'C109.8
H1—N2—H2115 (3)C10'—C9'—H9'D109.8
C6—C1—C2119.8 (2)C8—C9'—H9'D109.8
C6—C1—C7120.0 (2)H9'C—C9'—H9'D108.2
C2—C1—C7120.2 (2)C11—C10'—C9'112.1 (5)
C1—C2—C3119.8 (3)C11—C10'—H10C109.2
C1—C2—H2A120.1C9'—C10'—H10C109.2
C3—C2—H2A120.1C11—C10'—H10D109.2
C4—C3—C2120.3 (3)C9'—C10'—H10D109.2
C4—C3—H3119.8H10C—C10'—H10D107.9
C2—C3—H3119.8C12—C11—C16120.0 (2)
C3—C4—C5120.2 (2)C12—C11—C10'119.0 (3)
C3—C4—H4119.9C16—C11—C10'119.9 (3)
C5—C4—H4119.9C12—C11—C10121.8 (3)
C4—C5—C6119.9 (3)C16—C11—C10116.7 (3)
C4—C5—H5120.0C13—C12—C11120.6 (3)
C6—C5—H5120.0C13—C12—H12119.7
C1—C6—C5119.9 (3)C11—C12—H12119.7
C1—C6—H6120.1C12—C13—C14119.6 (2)
C5—C6—H6120.1C12—C13—H13120.2
C19—C7—C8119.64 (17)C14—C13—H13120.2
C19—C7—C1119.05 (17)C15—C14—C13120.1 (3)
C8—C7—C1121.31 (17)C15—C14—H14119.9
C7—C8—C17118.24 (18)C13—C14—H14119.9
C7—C8—C9'123.3 (3)C14—C15—C16120.4 (3)
C17—C8—C9'117.3 (3)C14—C15—H15119.8
C7—C8—C9120.9 (3)C16—C15—H15119.8
C17—C8—C9119.8 (3)C15—C16—C11119.2 (2)
C10—C9—C8109.7 (5)C15—C16—C17121.4 (2)
C10—C9—H9A109.7C11—C16—C17119.40 (18)
C8—C9—H9A109.7N1—C17—C8122.06 (18)
C10—C9—H9B109.7N1—C17—C16119.48 (18)
C8—C9—H9B109.7C8—C17—C16118.46 (18)
H9A—C9—H9B108.2N2—C18—N1118.65 (16)
C9—C10—C11107.5 (5)N2—C18—C19121.67 (16)
C9—C10—H10A110.2N1—C18—C19119.68 (17)
C11—C10—H10A110.2C7—C19—C18120.24 (17)
C9—C10—H10B110.2C7—C19—C20120.37 (17)
C11—C10—H10B110.2C18—C19—C20119.39 (17)
H10A—C10—H10B108.5N3—C20—C19179.3 (3)
C6—C1—C2—C3−0.4 (3)C10—C11—C12—C13−165.4 (4)
C7—C1—C2—C3179.9 (2)C11—C12—C13—C140.4 (5)
C1—C2—C3—C4−0.6 (3)C12—C13—C14—C15−0.5 (5)
C2—C3—C4—C51.0 (4)C13—C14—C15—C160.1 (5)
C3—C4—C5—C6−0.3 (4)C14—C15—C16—C110.5 (5)
C2—C1—C6—C51.1 (4)C14—C15—C16—C17179.9 (3)
C7—C1—C6—C5−179.3 (2)C12—C11—C16—C15−0.7 (5)
C4—C5—C6—C1−0.7 (4)C10'—C11—C16—C15−168.7 (4)
C6—C1—C7—C19110.6 (3)C10—C11—C16—C15165.6 (3)
C2—C1—C7—C19−69.8 (3)C12—C11—C16—C17179.9 (3)
C6—C1—C7—C8−69.5 (3)C10'—C11—C16—C1711.8 (5)
C2—C1—C7—C8110.1 (3)C10—C11—C16—C17−13.8 (4)
C19—C7—C8—C17−1.7 (4)C18—N1—C17—C80.2 (4)
C1—C7—C8—C17178.4 (2)C18—N1—C17—C16−179.2 (2)
C19—C7—C8—C9'−169.0 (4)C7—C8—C17—N11.5 (4)
C1—C7—C8—C9'11.0 (5)C9'—C8—C17—N1169.6 (3)
C19—C7—C8—C9166.8 (4)C9—C8—C17—N1−167.1 (4)
C1—C7—C8—C9−13.1 (5)C7—C8—C17—C16−179.1 (2)
C7—C8—C9—C10−141.5 (4)C9'—C8—C17—C16−11.0 (4)
C17—C8—C9—C1026.9 (6)C9—C8—C17—C1612.3 (5)
C9'—C8—C9—C10115.4 (13)C15—C16—C17—N1−19.7 (4)
C8—C9—C10—C11−55.9 (6)C11—C16—C17—N1159.7 (2)
C7—C8—C9'—C10'−146.4 (4)C15—C16—C17—C8160.9 (3)
C17—C8—C9'—C10'46.2 (6)C11—C16—C17—C8−19.7 (4)
C9—C8—C9'—C10'−56.5 (11)C17—N1—C18—N2178.3 (2)
C8—C9'—C10'—C11−52.0 (6)C17—N1—C18—C19−1.8 (3)
C9'—C10'—C11—C12−143.3 (4)C8—C7—C19—C180.2 (4)
C9'—C10'—C11—C1624.9 (6)C1—C7—C19—C18−179.9 (2)
C9'—C10'—C11—C10113.0 (11)C8—C7—C19—C20179.7 (2)
C9—C10—C11—C12−142.0 (4)C1—C7—C19—C20−0.4 (3)
C9—C10—C11—C1651.9 (5)N2—C18—C19—C7−178.5 (2)
C9—C10—C11—C10'−52.2 (9)N1—C18—C19—C71.6 (3)
C16—C11—C12—C130.2 (5)N2—C18—C19—C202.0 (4)
C10'—C11—C12—C13168.4 (4)N1—C18—C19—C20−177.9 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1···N3i0.88 (1)2.37 (2)3.175 (2)152 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯N3i0.88 (1)2.37 (2)3.175 (2)152 (3)

Symmetry code: (i) .

  3 in total

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  3 in total
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1.  2-Amino-4-(4-chloro-phen-yl)-5,6-dihydro-benzo[h]quinoline-3-carbonitrile-3-amino-1-(4-chloro-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile (1/4).

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

2.  2-Amino-4-(3,4-dimeth-oxy-phen-yl)-5,6-dihydro-benzo[h]quinoline-3-carbo-nitrile-3-amino-1-(3,4-dimeth-oxy-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile (1/19).

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

3.  An efficient approach to the synthesis of highly congested 9,10-dihydrophenanthrene-2,4-dicarbonitriles and their biological evaluation as antimicrobial agents.

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Journal:  Molecules       Date:  2013-12-16       Impact factor: 4.411

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