Literature DB >> 22059011

3-Amino-1-(2H-1,3-benzodioxol-5-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Abdullah M Asiri, Abdulrahman O Al-Youbi, Hassan M Faidallah, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(23)H(15)N(3)O(2), significant deviations from planarity are evidenced in the values of the dihedral angles formed between the amino-benzene ring and the benzene rings of the 1,3-benzodioxole [65.38 (12)°] and 1,2-dihydro-naphthalene [26.27 (14)°] residues; the dioxole ring has an envelope conformation with the methyl-ene-C being the flap atom. The amino-H atoms form hydrogen bonds to one of the dioxole-O atoms and to one of the cyano-N atoms to generate a two-dimensional array with a zigzag topology that stacks along the ([Formula: see text] 0 2) plane.

Entities:  

Year:  2011        PMID: 22059011      PMCID: PMC3200934          DOI: 10.1107/S1600536811033563

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of related compounds, see: Aly et al. (1991 ▶); Al-Saadi et al. (2005 ▶); Rostom et al. (2011 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C23H15N3O2 M = 365.38 Monoclinic, a = 8.9280 (6) Å b = 22.4518 (13) Å c = 8.9473 (6) Å β = 109.058 (7)° V = 1695.18 (19) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.25 × 0.25 × 0.05 mm

Data collection

Agilent Technologies SuperNova Dual diffractometer with Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.776, T max = 1.000 9604 measured reflections 3775 independent reflections 2570 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.167 S = 1.02 3775 reflections 261 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.65 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811033563/om2463sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033563/om2463Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033563/om2463Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H15N3O2F(000) = 760
Mr = 365.38Dx = 1.432 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2779 reflections
a = 8.9280 (6) Åθ = 2.4–29.3°
b = 22.4518 (13) ŵ = 0.09 mm1
c = 8.9473 (6) ÅT = 100 K
β = 109.058 (7)°Plate, orange
V = 1695.18 (19) Å30.25 × 0.25 × 0.05 mm
Z = 4
Agilent Technologies SuperNova Dual diffractometer with Atlas detector3775 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2570 reflections with I > 2σ(I)
mirrorRint = 0.042
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.6°
ω scanh = −9→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −29→24
Tmin = 0.776, Tmax = 1.000l = −11→11
9604 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.167H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0527P)2 + 2.2435P] where P = (Fo2 + 2Fc2)/3
3775 reflections(Δ/σ)max < 0.001
261 parametersΔρmax = 0.65 e Å3
2 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4763 (2)0.18869 (9)0.8357 (2)0.0314 (5)
O20.4316 (2)0.28084 (9)0.9262 (2)0.0331 (5)
N11.3481 (3)0.53871 (11)0.9128 (3)0.0338 (6)
N21.3145 (3)0.40625 (12)1.0585 (3)0.0336 (6)
H11.344 (4)0.3728 (9)1.112 (4)0.052 (11)*
H21.389 (3)0.4315 (12)1.058 (4)0.046 (10)*
N31.1365 (3)0.27041 (11)1.0990 (3)0.0334 (6)
C10.8958 (3)0.37338 (12)0.8347 (3)0.0258 (6)
C20.8496 (3)0.42563 (13)0.7482 (3)0.0272 (6)
C30.6849 (3)0.43271 (14)0.6300 (4)0.0342 (7)
H3A0.62050.45870.67460.041*
H3B0.63230.39340.60650.041*
C40.6975 (3)0.46015 (13)0.4790 (3)0.0306 (7)
H4A0.75610.43290.43100.037*
H4B0.59020.46630.40210.037*
C50.7827 (3)0.51885 (12)0.5167 (3)0.0270 (6)
C60.7385 (3)0.56661 (13)0.4116 (4)0.0297 (6)
H60.65410.56180.31480.036*
C70.8153 (3)0.62062 (13)0.4460 (4)0.0343 (7)
H70.78740.65230.37170.041*
C80.9328 (4)0.62819 (13)0.5890 (4)0.0360 (7)
H80.98380.66570.61450.043*
C90.9777 (3)0.58157 (13)0.6968 (4)0.0312 (7)
H91.05710.58790.79620.037*
C100.9068 (3)0.52541 (12)0.6600 (3)0.0263 (6)
C110.9590 (3)0.47229 (12)0.7635 (3)0.0261 (6)
C121.1138 (3)0.46557 (12)0.8686 (3)0.0240 (6)
C131.1643 (3)0.41274 (12)0.9576 (3)0.0259 (6)
C141.0515 (3)0.36702 (12)0.9370 (3)0.0243 (6)
C151.2379 (3)0.50862 (12)0.8885 (3)0.0268 (6)
C161.0980 (3)0.31309 (13)1.0264 (3)0.0271 (6)
C170.7828 (3)0.32335 (13)0.8240 (3)0.0260 (6)
C180.8070 (3)0.26822 (13)0.7666 (3)0.0304 (6)
H180.89250.26350.72650.037*
C190.7098 (3)0.21922 (14)0.7657 (3)0.0315 (7)
H190.72700.18140.72640.038*
C200.5905 (3)0.22874 (13)0.8238 (3)0.0274 (6)
C210.5615 (3)0.28346 (13)0.8782 (3)0.0273 (6)
C220.6548 (3)0.33250 (13)0.8791 (3)0.0278 (6)
H220.63350.37030.91510.033*
C230.3996 (4)0.21835 (13)0.9305 (4)0.0326 (7)
H23A0.44030.20351.04050.039*
H23B0.28400.21100.88890.039*
U11U22U33U12U13U23
O10.0306 (11)0.0281 (11)0.0333 (11)−0.0128 (9)0.0074 (8)−0.0032 (9)
O20.0300 (11)0.0322 (12)0.0402 (12)−0.0058 (9)0.0157 (9)−0.0018 (9)
N10.0301 (13)0.0236 (13)0.0451 (15)−0.0017 (11)0.0086 (11)0.0032 (11)
N20.0231 (12)0.0274 (15)0.0453 (15)−0.0042 (11)0.0046 (11)0.0105 (12)
N30.0318 (13)0.0273 (14)0.0369 (14)−0.0058 (11)0.0051 (11)0.0039 (12)
C10.0254 (14)0.0258 (15)0.0292 (14)−0.0026 (11)0.0131 (11)0.0030 (12)
C20.0226 (13)0.0283 (16)0.0325 (15)−0.0007 (11)0.0115 (11)0.0044 (12)
C30.0238 (14)0.0345 (18)0.0443 (18)−0.0021 (13)0.0112 (13)0.0090 (14)
C40.0269 (14)0.0267 (16)0.0378 (16)−0.0010 (12)0.0100 (12)0.0064 (13)
C50.0237 (14)0.0248 (15)0.0378 (16)0.0040 (11)0.0171 (12)0.0048 (12)
C60.0289 (15)0.0259 (16)0.0384 (16)0.0069 (12)0.0166 (12)0.0063 (13)
C70.0349 (16)0.0234 (16)0.0483 (19)0.0092 (13)0.0187 (14)0.0068 (14)
C80.0350 (16)0.0185 (15)0.057 (2)0.0030 (12)0.0178 (15)0.0002 (14)
C90.0273 (14)0.0246 (16)0.0434 (17)0.0053 (12)0.0141 (13)0.0003 (13)
C100.0219 (13)0.0221 (15)0.0397 (16)0.0035 (11)0.0165 (12)0.0021 (12)
C110.0257 (14)0.0245 (15)0.0313 (15)0.0018 (11)0.0134 (11)0.0017 (12)
C120.0232 (13)0.0193 (14)0.0339 (15)−0.0005 (11)0.0151 (11)−0.0012 (12)
C130.0256 (14)0.0218 (15)0.0317 (15)−0.0014 (11)0.0112 (11)0.0008 (12)
C140.0252 (14)0.0209 (14)0.0288 (14)−0.0014 (11)0.0114 (11)0.0024 (11)
C150.0271 (14)0.0217 (15)0.0317 (15)0.0023 (12)0.0096 (11)0.0023 (12)
C160.0211 (13)0.0292 (16)0.0306 (15)−0.0066 (12)0.0081 (11)−0.0009 (13)
C170.0257 (14)0.0275 (15)0.0240 (14)−0.0042 (12)0.0071 (11)0.0043 (12)
C180.0275 (14)0.0352 (17)0.0271 (15)−0.0003 (13)0.0070 (11)0.0019 (13)
C190.0290 (15)0.0331 (17)0.0272 (15)0.0010 (13)0.0022 (12)−0.0021 (13)
C200.0294 (14)0.0259 (15)0.0210 (13)−0.0054 (12)0.0002 (11)0.0015 (11)
C210.0251 (14)0.0363 (17)0.0213 (13)−0.0030 (12)0.0088 (11)0.0035 (12)
C220.0315 (15)0.0250 (15)0.0279 (14)−0.0057 (12)0.0109 (11)−0.0025 (12)
C230.0349 (16)0.0278 (17)0.0344 (16)−0.0083 (13)0.0104 (13)0.0011 (13)
O1—C201.389 (3)C7—C81.374 (4)
O1—C231.418 (3)C7—H70.9500
O2—C211.364 (3)C8—C91.391 (4)
O2—C231.435 (3)C8—H80.9500
N1—C151.154 (4)C9—C101.401 (4)
N2—C131.358 (4)C9—H90.9500
N2—H10.883 (10)C10—C111.488 (4)
N2—H20.877 (10)C11—C121.403 (4)
N3—C161.145 (4)C12—C131.418 (4)
C1—C21.392 (4)C12—C151.437 (4)
C1—C141.400 (4)C13—C141.407 (4)
C1—C171.492 (4)C14—C161.436 (4)
C2—C111.409 (4)C17—C181.384 (4)
C2—C31.513 (4)C17—C221.399 (4)
C3—C41.522 (4)C18—C191.400 (4)
C3—H3A0.9900C18—H180.9500
C3—H3B0.9900C19—C201.346 (4)
C4—C51.504 (4)C19—H190.9500
C4—H4A0.9900C20—C211.376 (4)
C4—H4B0.9900C21—C221.379 (4)
C5—C61.396 (4)C22—H220.9500
C5—C101.402 (4)C23—H23A0.9900
C6—C71.378 (4)C23—H23B0.9900
C6—H60.9500
C20—O1—C23104.5 (2)C5—C10—C11118.6 (2)
C21—O2—C23104.3 (2)C12—C11—C2119.0 (2)
C13—N2—H1120 (2)C12—C11—C10122.9 (2)
C13—N2—H2121 (2)C2—C11—C10118.0 (2)
H1—N2—H2117 (3)C11—C12—C13122.0 (2)
C2—C1—C14120.1 (2)C11—C12—C15124.2 (2)
C2—C1—C17121.8 (2)C13—C12—C15113.7 (2)
C14—C1—C17118.1 (2)N2—C13—C14121.2 (3)
C1—C2—C11120.2 (3)N2—C13—C12121.8 (2)
C1—C2—C3121.4 (2)C14—C13—C12117.0 (2)
C11—C2—C3118.3 (2)C1—C14—C13121.8 (3)
C2—C3—C4109.1 (2)C1—C14—C16119.7 (2)
C2—C3—H3A109.9C13—C14—C16118.5 (2)
C4—C3—H3A109.9N1—C15—C12173.0 (3)
C2—C3—H3B109.9N3—C16—C14179.2 (3)
C4—C3—H3B109.9C18—C17—C22120.4 (3)
H3A—C3—H3B108.3C18—C17—C1120.9 (2)
C5—C4—C3109.5 (2)C22—C17—C1118.7 (3)
C5—C4—H4A109.8C17—C18—C19122.3 (3)
C3—C4—H4A109.8C17—C18—H18118.9
C5—C4—H4B109.8C19—C18—H18118.9
C3—C4—H4B109.8C20—C19—C18116.1 (3)
H4A—C4—H4B108.2C20—C19—H19121.9
C6—C5—C10120.1 (3)C18—C19—H19121.9
C6—C5—C4120.7 (3)C19—C20—C21122.8 (3)
C10—C5—C4119.2 (2)C19—C20—O1128.3 (3)
C7—C6—C5121.0 (3)C21—C20—O1108.9 (2)
C7—C6—H6119.5O2—C21—C20110.5 (2)
C5—C6—H6119.5O2—C21—C22127.4 (3)
C8—C7—C6119.3 (3)C20—C21—C22122.1 (2)
C8—C7—H7120.3C21—C22—C17116.2 (3)
C6—C7—H7120.3C21—C22—H22121.9
C7—C8—C9120.8 (3)C17—C22—H22121.9
C7—C8—H8119.6O1—C23—O2107.7 (2)
C9—C8—H8119.6O1—C23—H23A110.2
C8—C9—C10120.6 (3)O2—C23—H23A110.2
C8—C9—H9119.7O1—C23—H23B110.2
C10—C9—H9119.7O2—C23—H23B110.2
C9—C10—C5118.1 (3)H23A—C23—H23B108.5
C9—C10—C11123.3 (3)
C14—C1—C2—C11−0.1 (4)C11—C12—C13—C14−0.5 (4)
C17—C1—C2—C11178.9 (2)C15—C12—C13—C14−176.4 (2)
C14—C1—C2—C3176.7 (3)C2—C1—C14—C130.9 (4)
C17—C1—C2—C3−4.3 (4)C17—C1—C14—C13−178.1 (2)
C1—C2—C3—C4−135.0 (3)C2—C1—C14—C16179.7 (3)
C11—C2—C3—C441.8 (4)C17—C1—C14—C160.7 (4)
C2—C3—C4—C5−57.5 (3)N2—C13—C14—C1179.3 (3)
C3—C4—C5—C6−143.6 (3)C12—C13—C14—C1−0.6 (4)
C3—C4—C5—C1035.8 (3)N2—C13—C14—C160.5 (4)
C10—C5—C6—C70.1 (4)C12—C13—C14—C16−179.4 (2)
C4—C5—C6—C7179.5 (2)C2—C1—C17—C18117.0 (3)
C5—C6—C7—C8−2.8 (4)C14—C1—C17—C18−64.0 (4)
C6—C7—C8—C91.9 (4)C2—C1—C17—C22−65.5 (4)
C7—C8—C9—C101.7 (4)C14—C1—C17—C22113.5 (3)
C8—C9—C10—C5−4.2 (4)C22—C17—C18—C19−2.1 (4)
C8—C9—C10—C11174.4 (3)C1—C17—C18—C19175.3 (3)
C6—C5—C10—C93.4 (4)C17—C18—C19—C200.1 (4)
C4—C5—C10—C9−176.1 (2)C18—C19—C20—C211.5 (4)
C6—C5—C10—C11−175.3 (2)C18—C19—C20—O1179.3 (2)
C4—C5—C10—C115.2 (4)C23—O1—C20—C19169.6 (3)
C1—C2—C11—C12−1.0 (4)C23—O1—C20—C21−12.3 (3)
C3—C2—C11—C12−177.8 (3)C23—O2—C21—C2011.9 (3)
C1—C2—C11—C10175.7 (2)C23—O2—C21—C22−168.8 (3)
C3—C2—C11—C10−1.1 (4)C19—C20—C21—O2178.4 (2)
C9—C10—C11—C12−26.2 (4)O1—C20—C21—O20.2 (3)
C5—C10—C11—C12152.4 (3)C19—C20—C21—C22−1.0 (4)
C9—C10—C11—C2157.2 (3)O1—C20—C21—C22−179.2 (2)
C5—C10—C11—C2−24.2 (4)O2—C21—C22—C17179.7 (3)
C2—C11—C12—C131.3 (4)C20—C21—C22—C17−1.0 (4)
C10—C11—C12—C13−175.2 (2)C18—C17—C22—C212.5 (4)
C2—C11—C12—C15176.7 (3)C1—C17—C22—C21−174.9 (2)
C10—C11—C12—C150.2 (4)C20—O1—C23—O219.6 (3)
C11—C12—C13—N2179.6 (3)C21—O2—C23—O1−19.5 (3)
C15—C12—C13—N23.7 (4)
D—H···AD—HH···AD···AD—H···A
N2—H1···O1i0.88 (1)2.40 (2)3.231 (3)157 (3)
N2—H2···N1ii0.88 (1)2.37 (2)3.188 (3)156 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯O1i0.88 (1)2.40 (2)3.231 (3)157 (3)
N2—H2⋯N1ii0.88 (1)2.37 (2)3.188 (3)156 (3)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  5 in total

1.  3-Amino-1-(4-meth-oxy-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

2.  3-Amino-1-(4-bromo-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Authors:  Abdullah M Asiri; Hassan M Faidallah; Abdulrahman O Al-Youbi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

3.  2-Amino-4-phenyl-5,6-dihydro-benzo[h]quinoline-3-carbonitrile-3-amino-1-phenyl-9,10-dihydro-phenanthrene-2,4-dicarbonitrile (5/3).

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

4.  An efficient approach to the synthesis of highly congested 9,10-dihydrophenanthrene-2,4-dicarbonitriles and their biological evaluation as antimicrobial agents.

Authors:  Hassan M Faidallah; Khalid M A Al-Shaikh; Tariq R Sobahi; Khalid A Khan; Abdullah M Asiri
Journal:  Molecules       Date:  2013-12-16       Impact factor: 4.411

5.  3-Amino-1-(thio-phen-2-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Authors:  Abdulrahman O Al-Youbi; Abdullah M Asiri; Hassan M Faidallah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
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