Literature DB >> 22219895

Methyl (9aR*,10S*,11R*,13aS*,13bS*)-9-oxo-6,7,9,9a,10,11-hexa-hydro-5H,13bH-11,13a-ep-oxy-pyrrolo-[2',1':3,4][1,4]diazepino[2,1-a]isoindole-10-carboxyl-ate.

Flavien A A Toze, Inga K Airiyan, Eugeniya V Nikitina, Elena A Sorokina, Victor N Khrustalev.   

Abstract

The title compound, C(17)H(18)N(2)O(4), is the methyl ester of the adduct of intra-molecular Diels-Alder reaction between maleic anhydride and 1-(2-fur-yl)-2,3,4,5-tetra-hydro-1H-pyrrolo-[1,2-a][1,4]diazepine. The mol-ecule comprises a fused penta-cyclic system containing four five-membered rings (viz. pyrrole, 2-pyrrolidinone, tetra-hydro-furan and dihydro-furan) and one seven-membered ring (1,4-diazepane). The pyrrole ring is approximately planar (r.m.s. deviation = 0.003 Å) while the 2-pyrrolidinone, tetra-hydro-furan and dihydro-furan five-membered rings have the usual envelope conformations. The central seven-membered diazepane ring adopts a boat conformation. In the crystal, mol-ecules are bound by weak inter-molecular C-H⋯O hydrogen-bonding inter-actions into zigzag chains propagating in [010]. In the crystal packing, the chains are stacked along the a axis.

Entities:  

Year:  2011        PMID: 22219895      PMCID: PMC3247590          DOI: 10.1107/S1600536811040360

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For reviews on the synthesis of isoindoles, see: Jones & Chapman (1996 ▶); Donohoe (2000 ▶). For reviews on intra­molecular cyclo­addition reactions of α,β-unsaturated acid anhydrides to furfuryl­amines (IMDAF reactions), see: Vogel et al. (1999 ▶); Zubkov et al. (2005 ▶). For related compounds, see: Zubkov et al. (2009 ▶, 2010 ▶, 2011 ▶).

Experimental

Crystal data

C17H18N2O4 M = 314.33 Monoclinic, a = 11.5817 (12) Å b = 9.0152 (10) Å c = 14.8607 (16) Å β = 112.749 (2)° V = 1430.9 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.969, T max = 0.979 17904 measured reflections 4167 independent reflections 3685 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.099 S = 1.00 4167 reflections 209 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811040360/aa2027sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811040360/aa2027Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18N2O4F(000) = 664
Mr = 314.33Dx = 1.459 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7472 reflections
a = 11.5817 (12) Åθ = 2.7–32.6°
b = 9.0152 (10) ŵ = 0.11 mm1
c = 14.8607 (16) ÅT = 100 K
β = 112.749 (2)°Prism, colourless
V = 1430.9 (3) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker APEXII CCD diffractometer4167 independent reflections
Radiation source: fine-focus sealed tube3685 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 30.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −16→16
Tmin = 0.969, Tmax = 0.979k = −12→12
17904 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0545P)2 + 0.545P] where P = (Fo2 + 2Fc2)/3
4167 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. IR (KBr), ν (cm-1): 3406, 1737, 1690; 1H NMR (CDCl3, 600 MHz, 300 K): δ = 1.83 (m, 1H, H6A), 2.16 (m, 1H, H6B), 2.78 (d, 1H, H9A, J9A,10 = 8.9), 2.84 (ddd, 1H, H6, J7B,6B = 6.9, J7B,6A = 10.6, J7,7 = 17.9), 2.91 (d, 1H, H10, J9A,10 = 8.9), 3.79 (s, 3H, CO2Me), 3.81 (ddd, 1H, H5B, J5B,6A = 5.8, J5B,6B = 8.3, J5,5 = 14.2), 4.02 (br. dd, 1H, H5A, J5A,6 = 8.3, J5,5 = 14.2), 4.55 (ddd, 1H, H7A, J7A,6A = 5.1, J7A,6B = 12.7, J7,7 = 17.9), 5.12 (d, 1H, H11, J11,12 = 1.7), 5.47 (s, 1H, H13B), 6.06 (dd, 1H, H2, J2,3 = 2.2, J1,2 = 3.4), 6.17 (dd, 1H, H1, J1,3 = 1.7, J1,2 = 3.4), 6.40 (dd, 1H, H12, J11,12 = 1.7, J12,13 = 5.8), 6.55 (dd, 1H, H3, J1,3 = 1.7, J2,3 = 2.2), 6.59 (d, 1H, H13, J12,13 = 5.8). EI—MS (70 eV) m/z (rel. intensity): 300 [M]+ (84), 282 (5), 271 (15), 254 (73), 237 (20), 225 (66), 211 (12), 202 (100), 187 (26), 172 (19), 158 (6), 144 (6), 135 (31), 106 (33), 98 (30), 91 (23), 79 (65), 54 (60), 43 (55). Anal. Calcd for C17H18N2O4: C, 64.96; H, 5.77; N, 8.91. Found: C, 64.88; H, 5.53; N, 8.66.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.21252 (7)0.13743 (9)0.19684 (5)0.01893 (16)
O20.12840 (7)0.15880 (8)−0.04077 (6)0.01879 (15)
O30.00054 (7)0.29911 (8)0.00561 (6)0.01676 (15)
C10.72407 (9)0.21971 (11)0.19832 (7)0.01507 (18)
H10.76580.30840.22800.018*
C20.77184 (9)0.10722 (12)0.15513 (7)0.01717 (19)
H20.85100.10730.14980.021*
C30.68230 (9)−0.00134 (11)0.12259 (7)0.01630 (19)
H30.6892−0.09060.09110.020*
N40.58103 (8)0.04029 (9)0.14314 (6)0.01360 (16)
C50.46763 (9)−0.04890 (11)0.12104 (7)0.01633 (18)
H5A0.4717−0.13600.08180.020*
H5B0.39400.01100.08110.020*
C60.44989 (9)−0.10258 (11)0.21236 (7)0.01676 (19)
H6A0.5128−0.18020.24460.020*
H6B0.3658−0.14790.19300.020*
C70.46293 (9)0.02321 (11)0.28511 (7)0.01455 (18)
H7A0.4117−0.00040.32330.017*
H7B0.55140.03020.33120.017*
N80.42359 (7)0.16558 (9)0.23701 (6)0.01275 (15)
C90.30159 (9)0.20771 (10)0.19421 (7)0.01331 (17)
C9A0.29876 (8)0.35968 (10)0.14869 (7)0.01202 (17)
H9A0.29560.44040.19390.014*
C100.20435 (8)0.39060 (10)0.04251 (7)0.01249 (17)
H100.16060.48720.03930.015*
C110.29855 (8)0.40367 (10)−0.00989 (7)0.01305 (17)
H110.26020.3913−0.08240.016*
C120.37240 (9)0.54653 (11)0.02527 (7)0.01537 (18)
H120.36260.6368−0.00990.018*
C130.45390 (9)0.51866 (10)0.11585 (7)0.01456 (18)
H130.51580.58350.15820.017*
C13A0.42597 (8)0.36124 (10)0.13604 (6)0.01148 (17)
C13B0.51312 (8)0.26159 (10)0.21615 (6)0.01180 (17)
H13B0.55930.32340.27500.014*
C13C0.60588 (8)0.17628 (10)0.18918 (6)0.01212 (17)
O140.38943 (6)0.29270 (7)0.04125 (5)0.01203 (14)
C140.11017 (8)0.26807 (10)−0.00121 (7)0.01313 (17)
C15−0.09493 (10)0.18619 (12)−0.03298 (9)0.0222 (2)
H15A−0.17450.2235−0.03320.033*
H15B−0.07000.09720.00790.033*
H15C−0.10490.1615−0.09980.033*
U11U22U33U12U13U23
O10.0149 (3)0.0210 (4)0.0219 (3)−0.0005 (3)0.0083 (3)0.0055 (3)
O20.0196 (3)0.0164 (3)0.0230 (4)−0.0020 (3)0.0111 (3)−0.0050 (3)
O30.0122 (3)0.0144 (3)0.0241 (3)0.0005 (2)0.0075 (3)0.0001 (3)
C10.0129 (4)0.0176 (4)0.0145 (4)0.0001 (3)0.0051 (3)−0.0006 (3)
C20.0154 (4)0.0220 (5)0.0155 (4)0.0049 (4)0.0074 (3)0.0020 (4)
C30.0209 (5)0.0159 (4)0.0138 (4)0.0062 (4)0.0086 (3)0.0015 (3)
N40.0158 (4)0.0116 (4)0.0135 (3)0.0007 (3)0.0058 (3)−0.0009 (3)
C50.0183 (4)0.0132 (4)0.0156 (4)−0.0027 (3)0.0045 (3)−0.0025 (3)
C60.0168 (4)0.0127 (4)0.0199 (4)−0.0014 (3)0.0060 (4)0.0012 (3)
C70.0144 (4)0.0142 (4)0.0139 (4)0.0012 (3)0.0043 (3)0.0036 (3)
N80.0122 (3)0.0126 (3)0.0141 (3)0.0007 (3)0.0058 (3)0.0022 (3)
C90.0144 (4)0.0145 (4)0.0117 (4)0.0013 (3)0.0058 (3)0.0003 (3)
C9A0.0122 (4)0.0120 (4)0.0124 (4)0.0016 (3)0.0054 (3)0.0001 (3)
C100.0123 (4)0.0113 (4)0.0138 (4)0.0015 (3)0.0049 (3)0.0002 (3)
C110.0133 (4)0.0125 (4)0.0136 (4)0.0016 (3)0.0054 (3)0.0013 (3)
C120.0169 (4)0.0118 (4)0.0192 (4)0.0003 (3)0.0090 (3)0.0021 (3)
C130.0160 (4)0.0107 (4)0.0187 (4)−0.0010 (3)0.0085 (3)−0.0008 (3)
C13A0.0125 (4)0.0106 (4)0.0119 (4)0.0001 (3)0.0053 (3)−0.0015 (3)
C13B0.0113 (4)0.0119 (4)0.0120 (4)−0.0003 (3)0.0044 (3)−0.0010 (3)
C13C0.0127 (4)0.0119 (4)0.0114 (4)0.0009 (3)0.0042 (3)−0.0004 (3)
O140.0134 (3)0.0115 (3)0.0109 (3)0.0019 (2)0.0044 (2)−0.0006 (2)
C140.0126 (4)0.0140 (4)0.0125 (4)0.0017 (3)0.0047 (3)0.0024 (3)
C150.0159 (4)0.0197 (5)0.0320 (5)−0.0038 (4)0.0105 (4)−0.0008 (4)
O1—C91.2241 (12)N8—C13B1.4728 (12)
O2—C141.2069 (12)C9—C9A1.5227 (13)
O3—C141.3417 (11)C9A—C13A1.5557 (13)
O3—C151.4482 (12)C9A—C101.5584 (13)
C1—C13C1.3790 (13)C9A—H9A1.0000
C1—C21.4217 (13)C10—C141.5113 (13)
C1—H10.9500C10—C111.5709 (13)
C2—C31.3709 (15)C10—H101.0000
C2—H20.9500C11—O141.4379 (11)
C3—N41.3735 (12)C11—C121.5224 (13)
C3—H30.9500C11—H111.0000
N4—C13C1.3790 (12)C12—C131.3355 (13)
N4—C51.4648 (12)C12—H120.9500
C5—C61.5276 (14)C13—C13A1.5112 (13)
C5—H5A0.9900C13—H130.9500
C5—H5B0.9900C13A—O141.4437 (11)
C6—C71.5335 (14)C13A—C13B1.5211 (12)
C6—H6A0.9900C13B—C13C1.4964 (12)
C6—H6B0.9900C13B—H13B1.0000
C7—N81.4540 (12)C15—H15A0.9800
C7—H7A0.9900C15—H15B0.9800
C7—H7B0.9900C15—H15C0.9800
N8—C91.3602 (12)
C14—O3—C15115.05 (8)C14—C10—C9A114.31 (7)
C13C—C1—C2107.32 (9)C14—C10—C11111.46 (7)
C13C—C1—H1126.3C9A—C10—C1199.53 (7)
C2—C1—H1126.3C14—C10—H10110.4
C3—C2—C1107.17 (9)C9A—C10—H10110.4
C3—C2—H2126.4C11—C10—H10110.4
C1—C2—H2126.4O14—C11—C12102.00 (7)
C2—C3—N4108.73 (8)O14—C11—C10101.10 (7)
C2—C3—H3125.6C12—C11—C10107.40 (7)
N4—C3—H3125.6O14—C11—H11114.9
C3—N4—C13C108.72 (8)C12—C11—H11114.9
C3—N4—C5124.67 (8)C10—C11—H11114.9
C13C—N4—C5126.59 (8)C13—C12—C11105.73 (8)
N4—C5—C6113.07 (8)C13—C12—H12127.1
N4—C5—H5A109.0C11—C12—H12127.1
C6—C5—H5A109.0C12—C13—C13A104.76 (8)
N4—C5—H5B109.0C12—C13—H13127.6
C6—C5—H5B109.0C13A—C13—H13127.6
H5A—C5—H5B107.8O14—C13A—C13102.28 (7)
C5—C6—C7112.43 (8)O14—C13A—C13B111.49 (7)
C5—C6—H6A109.1C13—C13A—C13B125.58 (8)
C7—C6—H6A109.1O14—C13A—C9A100.37 (7)
C5—C6—H6B109.1C13—C13A—C9A108.53 (7)
C7—C6—H6B109.1C13B—C13A—C9A105.84 (7)
H6A—C6—H6B107.8N8—C13B—C13C113.03 (8)
N8—C7—C6112.31 (8)N8—C13B—C13A101.75 (7)
N8—C7—H7A109.1C13C—C13B—C13A114.94 (7)
C6—C7—H7A109.1N8—C13B—H13B108.9
N8—C7—H7B109.1C13C—C13B—H13B108.9
C6—C7—H7B109.1C13A—C13B—H13B108.9
H7A—C7—H7B107.9N4—C13C—C1108.06 (8)
C9—N8—C7123.21 (8)N4—C13C—C13B123.79 (8)
C9—N8—C13B115.22 (8)C1—C13C—C13B128.00 (9)
C7—N8—C13B120.66 (7)C11—O14—C13A95.53 (6)
O1—C9—N8125.20 (9)O2—C14—O3123.77 (9)
O1—C9—C9A127.32 (9)O2—C14—C10124.95 (9)
N8—C9—C9A107.40 (8)O3—C14—C10111.22 (8)
C9—C9A—C13A101.72 (7)O3—C15—H15A109.5
C9—C9A—C10119.79 (8)O3—C15—H15B109.5
C13A—C9A—C10101.68 (7)H15A—C15—H15B109.5
C9—C9A—H9A110.9O3—C15—H15C109.5
C13A—C9A—H9A110.9H15A—C15—H15C109.5
C10—C9A—H9A110.9H15B—C15—H15C109.5
C13C—C1—C2—C3−0.86 (11)C10—C9A—C13A—C1370.29 (8)
C1—C2—C3—N40.56 (11)C9—C9A—C13A—C13B−28.44 (9)
C2—C3—N4—C13C−0.05 (10)C10—C9A—C13A—C13B−152.58 (7)
C2—C3—N4—C5−178.73 (8)C9—N8—C13B—C13C−133.68 (8)
C3—N4—C5—C6114.00 (10)C7—N8—C13B—C13C35.75 (11)
C13C—N4—C5—C6−64.44 (12)C9—N8—C13B—C13A−9.87 (10)
N4—C5—C6—C749.81 (11)C7—N8—C13B—C13A159.56 (8)
C5—C6—C7—N830.48 (11)O14—C13A—C13B—N8−84.63 (8)
C6—C7—N8—C980.15 (11)C13—C13A—C13B—N8151.13 (8)
C6—C7—N8—C13B−88.42 (10)C9A—C13A—C13B—N823.60 (9)
C7—N8—C9—O15.44 (15)O14—C13A—C13B—C13C37.88 (10)
C13B—N8—C9—O1174.58 (9)C13—C13A—C13B—C13C−86.36 (11)
C7—N8—C9—C9A−177.68 (8)C9A—C13A—C13B—C13C146.11 (8)
C13B—N8—C9—C9A−8.54 (10)C3—N4—C13C—C1−0.50 (10)
O1—C9—C9A—C13A−160.63 (9)C5—N4—C13C—C1178.15 (9)
N8—C9—C9A—C13A22.59 (9)C3—N4—C13C—C13B175.47 (8)
O1—C9—C9A—C10−49.71 (13)C5—N4—C13C—C13B−5.89 (14)
N8—C9—C9A—C10133.51 (8)C2—C1—C13C—N40.83 (10)
C9—C9A—C10—C147.94 (11)C2—C1—C13C—C13B−174.91 (9)
C13A—C9A—C10—C14118.89 (8)N8—C13B—C13C—N429.70 (12)
C9—C9A—C10—C11−110.93 (9)C13A—C13B—C13C—N4−86.51 (11)
C13A—C9A—C10—C110.01 (8)N8—C13B—C13C—C1−155.17 (9)
C14—C10—C11—O14−84.18 (8)C13A—C13B—C13C—C188.61 (11)
C9A—C10—C11—O1436.79 (8)C12—C11—O14—C13A49.61 (8)
C14—C10—C11—C12169.35 (7)C10—C11—O14—C13A−61.07 (7)
C9A—C10—C11—C12−69.68 (8)C13—C13A—O14—C11−51.18 (8)
O14—C11—C12—C13−30.93 (9)C13B—C13A—O14—C11172.30 (7)
C10—C11—C12—C1374.90 (9)C9A—C13A—O14—C1160.57 (7)
C11—C12—C13—C13A−1.82 (10)C15—O3—C14—O23.79 (14)
C12—C13—C13A—O1433.99 (9)C15—O3—C14—C10−178.93 (8)
C12—C13—C13A—C13B162.06 (9)C9A—C10—C14—O2−84.24 (11)
C12—C13—C13A—C9A−71.52 (9)C11—C10—C14—O227.65 (13)
C9—C9A—C13A—O1487.60 (7)C9A—C10—C14—O398.52 (9)
C10—C9A—C13A—O14−36.53 (8)C11—C10—C14—O3−149.60 (8)
C9—C9A—C13A—C13−165.57 (7)
D—H···AD—HH···AD···AD—H···A
C9A—H9A···O1i1.002.433.4334 (13)180
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9A—H9A⋯O1i1.002.433.4334 (13)180

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  3 in total

1.  Diethyl 1,8-diphenyl-11-oxatricyclo-[6.2.1.0(2,7)]undeca-2,4,6-triene-9,10-dicarboxyl-ate.

Authors:  B Balakrishnan; Meganathan Nandakumar; P R Seshadri; Arasambattu K Mohanakrishnan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-02

2.  Crystal strucutre of rac-methyl (11aR*,12S*,13R*,15aS*,15bS*)-11-oxo-11,11a,12,13-tetra-hydro-9H,15bH-13,15a-ep-oxy-isoindolo[1,2-c]pyrrolo[1,2-a][1,4]benzodiazepine-12-carboxyl-ate.

Authors:  Vladimir P Zaytsev; Daria N Orlova; Atash V Gurbanov; Fedor I Zubkov; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-05

3.  Crystal structure of methyl (3RS,4SR,4aRS,11aRS,11bSR)-5-oxo-3,4,4a,5,7,8,9,10,11,11a-deca-hydro-3,11b-ep-oxy-azepino[2,1-a]iso-indole-4-carboxyl-ate.

Authors:  Flavien A A Toze; Dmitry S Poplevin; Fedor I Zubkov; Eugeniya V Nikitina; Ciara Porras; Victor N Khrustalev
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-12
  3 in total

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