Literature DB >> 26594446

Crystal structure of methyl (3RS,4SR,4aRS,11aRS,11bSR)-5-oxo-3,4,4a,5,7,8,9,10,11,11a-deca-hydro-3,11b-ep-oxy-azepino[2,1-a]iso-indole-4-carboxyl-ate.

Flavien A A Toze1, Dmitry S Poplevin2, Fedor I Zubkov2, Eugeniya V Nikitina2, Ciara Porras3, Victor N Khrustalev4.   

Abstract

The title compound, C15H19NO4, is the a product of the esterification of the corresponding carbonic acid with methanol. The mol-ecule comprises a fused tetra-cyclic system containing three five-membered rings (2-pyrrolidinone, tetra-hydro-furan and di-hydro-furan) and one seven-membered ring (azepane). The five-membered rings have the usual envelope conformations, with the quaternary C atom being the flap atom for the 2-pyrrolidinone ring, and the ether O atom being the common flap atom for the remaining rings. The seven-membered azepane ring adopts a chair conformation with the methine and middle methyl-ene C atoms lying above and below the mean plane defined by the remaining five atoms. The carboxyl-ate substituent is rotated by 77.56 (5)° with respect to the base plane of the tetra-hydro-furan ring. In the crystal, the mol-ecules are bound by weak C-H⋯O hydrogen-bonding inter-actions into puckered layers parallel to (001).

Entities:  

Keywords:  3,6a-ep­oxy­iso­indoles; C—H⋯O hydrogen bonds; azepane; crystal structure; intra­molecular cyclo­addition

Year:  2015        PMID: 26594446      PMCID: PMC4647423          DOI: 10.1107/S2056989015016679

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of 2-(furan-2-yl)azepane, see: Asher et al. (1981 ▸); Shono et al. (1981 ▸); Nikolic & Beak (1997 ▸). For intra­molecular cyclo­addition reactions of α,β-unsaturated acid anhydrides to α-furyl­amines (IMDAF reactions), see: Vogel et al. (1999 ▸); Zubkov et al. (2005 ▸). For related compounds, see: Zylber et al. (1995 ▸); Evans et al. (1999 ▸); Kachkovskyi & Kolodiazhnyi (2007 ▸); Kharitonov et al. (2009 ▸); Aabid et al. (2010 ▸); Zubkov et al. (2010 ▸, 2011 ▸, 2014 ▸); Toze et al. (2011 ▸); Wang & Li (2012 ▸); Zaytsev, Mikhailova et al. (2012 ▸); Zaytsev, Zubkov et al. 2012 ▸); Zaytsev et al. (2013 ▸); Chen et al. (2013 ▸); Hizartzidis et al. (2014 ▸).

Experimental

Crystal data

C15H19NO4 M = 277.31 Triclinic, a = 7.5460 (8) Å b = 9.6984 (10) Å c = 10.2894 (10) Å α = 103.857 (2)° β = 94.745 (2)° γ = 106.620 (2)° V = 691.24 (12) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 290 K 0.30 × 0.25 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2003 ▸) T min = 0.959, T max = 0.969 9699 measured reflections 3268 independent reflections 2613 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.141 S = 1.03 3268 reflections 182 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2005 ▸); cell refinement: SAINT (Bruker, 2001 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015016679/tk5384sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016679/tk5384Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016679/tk5384Isup3.cml Click here for additional data file. a b a . DOI: 10.1107/S2056989015016679/tk5384fig1.tif Esterification of 5-oxo-3,4,4a,5,7,8,9,10,11,11a-deca­hydro-3,11b-ep­oxy­azepino[2,1-a]iso­indole-4-carb­oxy­lic acid with methanol. Click here for additional data file. . DOI: 10.1107/S2056989015016679/tk5384fig2.tif Mol­ecular structure of (I). Displacement ellipsoids are shown at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. Click here for additional data file. a . DOI: 10.1107/S2056989015016679/tk5384fig3.tif Crystal packing of (I) along the a axis demonstrating the H-bonded puckered layers parallel to (001). Dashed lines indicate the weak inter­molecular C—H⋯O hydrogen-bonding inter­actions. CCDC reference: 1422681 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H19NO4Z = 2
Mr = 277.31F(000) = 296
Triclinic, P1Dx = 1.332 Mg m3
a = 7.5460 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.6984 (10) ÅCell parameters from 4971 reflections
c = 10.2894 (10) Åθ = 2.3–29.5°
α = 103.857 (2)°µ = 0.10 mm1
β = 94.745 (2)°T = 290 K
γ = 106.620 (2)°Prism, colourless
V = 691.24 (12) Å30.30 × 0.25 × 0.25 mm
Bruker APEXII CCD diffractometer2613 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
φ and ω scansθmax = 28.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −9→9
Tmin = 0.959, Tmax = 0.969k = −12→12
9699 measured reflectionsl = −13→13
3268 independent reflections
Refinement on F2Primary atom site location: difference Fourier map
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0765P)2 + 0.153P] where P = (Fo2 + 2Fc2)/3
3268 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.55178 (19)0.17386 (17)0.75675 (18)0.0471 (4)
H10.45150.20090.72440.056*
C20.5710 (2)0.12672 (19)0.86511 (18)0.0491 (4)
H20.48660.11360.92550.059*
C30.7587 (2)0.09790 (16)0.87191 (15)0.0403 (3)
H30.77230.02810.92400.048*
C40.91211 (19)0.25575 (15)0.91807 (14)0.0356 (3)
H40.87350.32210.98990.043*
C4A0.89714 (17)0.30474 (14)0.78642 (13)0.0320 (3)
H4A0.87200.40060.80280.038*
C51.04722 (18)0.29945 (15)0.69682 (14)0.0352 (3)
O51.21692 (14)0.35060 (14)0.73347 (12)0.0513 (3)
N60.96070 (17)0.23177 (15)0.56738 (12)0.0414 (3)
C71.0663 (3)0.2066 (3)0.45696 (19)0.0663 (5)
H7A1.09310.11340.45060.080*
H7B1.18520.28640.47880.080*
C80.9697 (5)0.1996 (3)0.3221 (2)0.0920 (8)
H8A0.87760.10110.28610.110*
H8B1.06160.20890.26150.110*
C90.8730 (4)0.3136 (3)0.3181 (2)0.0914 (8)
H9A0.95260.40880.37780.110*
H9B0.86370.32460.22680.110*
C100.6832 (4)0.2847 (3)0.3564 (2)0.0873 (8)
H10A0.60300.19130.29410.105*
H10B0.63530.36320.34110.105*
C110.6606 (3)0.2749 (2)0.4981 (2)0.0620 (5)
H11A0.52770.23890.50170.074*
H11B0.71030.37510.55920.074*
C11A0.7550 (2)0.17431 (17)0.55118 (15)0.0423 (3)
H11C0.70810.07190.49140.051*
C11B0.72833 (18)0.17475 (15)0.69564 (14)0.0353 (3)
O120.76978 (13)0.05080 (10)0.73010 (10)0.0362 (2)
C131.1022 (2)0.24951 (16)0.96810 (14)0.0369 (3)
O131.15577 (16)0.14282 (13)0.93999 (12)0.0503 (3)
O141.20359 (16)0.38062 (13)1.05547 (12)0.0547 (3)
C141.3882 (3)0.3891 (3)1.1134 (2)0.0785 (7)
H14A1.44320.48231.18230.118*
H14B1.46490.38311.04370.118*
H14C1.37930.30761.15280.118*
U11U22U33U12U13U23
C10.0251 (7)0.0436 (8)0.0698 (11)0.0131 (6)0.0051 (7)0.0090 (7)
C20.0352 (8)0.0505 (9)0.0634 (10)0.0136 (6)0.0208 (7)0.0147 (7)
C30.0389 (7)0.0414 (8)0.0462 (8)0.0148 (6)0.0143 (6)0.0171 (6)
C40.0346 (7)0.0389 (7)0.0350 (7)0.0170 (6)0.0074 (5)0.0063 (5)
C4A0.0276 (6)0.0300 (6)0.0393 (7)0.0131 (5)0.0028 (5)0.0074 (5)
C50.0299 (6)0.0378 (7)0.0428 (7)0.0134 (5)0.0052 (5)0.0169 (6)
O50.0271 (5)0.0681 (8)0.0603 (7)0.0106 (5)0.0047 (5)0.0266 (6)
N60.0388 (7)0.0508 (7)0.0387 (6)0.0172 (6)0.0076 (5)0.0158 (5)
C70.0728 (13)0.0911 (15)0.0516 (10)0.0372 (11)0.0287 (9)0.0299 (10)
C80.153 (3)0.0921 (17)0.0439 (11)0.0550 (17)0.0284 (13)0.0186 (11)
C90.135 (3)0.0910 (17)0.0566 (12)0.0335 (16)0.0119 (14)0.0391 (12)
C100.105 (2)0.0797 (15)0.0733 (14)0.0216 (14)−0.0235 (14)0.0358 (12)
C110.0454 (9)0.0690 (12)0.0734 (12)0.0160 (8)−0.0107 (8)0.0323 (10)
C11A0.0372 (7)0.0424 (8)0.0424 (8)0.0088 (6)−0.0039 (6)0.0109 (6)
C11B0.0273 (6)0.0330 (7)0.0450 (7)0.0113 (5)0.0011 (5)0.0093 (5)
O120.0351 (5)0.0309 (5)0.0438 (5)0.0132 (4)0.0073 (4)0.0085 (4)
C130.0395 (7)0.0419 (7)0.0327 (7)0.0179 (6)0.0056 (5)0.0105 (5)
O130.0452 (6)0.0456 (6)0.0635 (7)0.0234 (5)0.0030 (5)0.0123 (5)
O140.0458 (6)0.0534 (7)0.0541 (7)0.0215 (5)−0.0103 (5)−0.0062 (5)
C140.0509 (11)0.0831 (15)0.0813 (14)0.0250 (10)−0.0251 (10)−0.0073 (11)
C1—C21.315 (3)C8—C91.495 (4)
C1—C11B1.5182 (19)C8—H8A0.9700
C1—H10.9300C8—H8B0.9700
C2—C31.519 (2)C9—C101.484 (4)
C2—H20.9300C9—H9A0.9700
C3—O121.4380 (18)C9—H9B0.9700
C3—C41.567 (2)C10—C111.504 (3)
C3—H30.9800C10—H10A0.9700
C4—C131.5062 (19)C10—H10B0.9700
C4—C4A1.5450 (19)C11—C11A1.531 (2)
C4—H40.9800C11—H11A0.9700
C4A—C51.5226 (18)C11—H11B0.9700
C4A—C11B1.5508 (18)C11A—C11B1.515 (2)
C4A—H4A0.9800C11A—H11C0.9800
C5—O51.2228 (17)C11B—O121.4386 (16)
C5—N61.3502 (19)C13—O131.1972 (17)
N6—C71.454 (2)C13—O141.3389 (18)
N6—C11A1.4718 (19)O14—C141.440 (2)
C7—C81.490 (3)C14—H14A0.9600
C7—H7A0.9700C14—H14B0.9600
C7—H7B0.9700C14—H14C0.9600
C2—C1—C11B105.23 (13)C10—C9—C8117.5 (2)
C2—C1—H1127.4C10—C9—H9A107.9
C11B—C1—H1127.4C8—C9—H9A107.9
C1—C2—C3106.25 (13)C10—C9—H9B107.9
C1—C2—H2126.9C8—C9—H9B107.9
C3—C2—H2126.9H9A—C9—H9B107.2
O12—C3—C2100.98 (12)C9—C10—C11118.87 (19)
O12—C3—C4101.71 (10)C9—C10—H10A107.6
C2—C3—C4106.12 (12)C11—C10—H10A107.6
O12—C3—H3115.4C9—C10—H10B107.6
C2—C3—H3115.4C11—C10—H10B107.6
C4—C3—H3115.4H10A—C10—H10B107.0
C13—C4—C4A115.38 (11)C10—C11—C11A116.12 (18)
C13—C4—C3112.85 (12)C10—C11—H11A108.3
C4A—C4—C3100.04 (11)C11A—C11—H11A108.3
C13—C4—H4109.4C10—C11—H11B108.3
C4A—C4—H4109.4C11A—C11—H11B108.3
C3—C4—H4109.4H11A—C11—H11B107.4
C5—C4A—C4119.20 (10)N6—C11A—C11B100.81 (11)
C5—C4A—C11B100.41 (11)N6—C11A—C11112.40 (13)
C4—C4A—C11B101.76 (10)C11B—C11A—C11112.17 (14)
C5—C4A—H4A111.4N6—C11A—H11C110.4
C4—C4A—H4A111.4C11B—C11A—H11C110.4
C11B—C4A—H4A111.4C11—C11A—H11C110.4
O5—C5—N6125.20 (13)O12—C11B—C11A111.09 (11)
O5—C5—C4A126.66 (13)O12—C11B—C1101.52 (11)
N6—C5—C4A108.11 (11)C11A—C11B—C1126.86 (12)
C5—N6—C7121.55 (14)O12—C11B—C4A99.30 (10)
C5—N6—C11A114.43 (12)C11A—C11B—C4A105.24 (11)
C7—N6—C11A123.77 (14)C1—C11B—C4A109.56 (11)
N6—C7—C8114.54 (19)C3—O12—C11B96.06 (10)
N6—C7—H7A108.6O13—C13—O14123.64 (13)
C8—C7—H7A108.6O13—C13—C4126.23 (13)
N6—C7—H7B108.6O14—C13—C4110.07 (11)
C8—C7—H7B108.6C13—O14—C14115.86 (13)
H7A—C7—H7B107.6O14—C14—H14A109.5
C7—C8—C9117.0 (2)O14—C14—H14B109.5
C7—C8—H8A108.0H14A—C14—H14B109.5
C9—C8—H8A108.0O14—C14—H14C109.5
C7—C8—H8B108.0H14A—C14—H14C109.5
C9—C8—H8B108.0H14B—C14—H14C109.5
H8A—C8—H8B107.3
C11B—C1—C2—C3−0.09 (17)C10—C11—C11A—N665.8 (2)
C1—C2—C3—O12−32.37 (16)C10—C11—C11A—C11B178.61 (16)
C1—C2—C3—C473.37 (16)N6—C11A—C11B—O12−76.52 (13)
O12—C3—C4—C13−91.15 (13)C11—C11A—C11B—O12163.70 (12)
C2—C3—C4—C13163.64 (12)N6—C11A—C11B—C1159.66 (13)
O12—C3—C4—C4A32.02 (12)C11—C11A—C11B—C139.9 (2)
C2—C3—C4—C4A−73.20 (13)N6—C11A—C11B—C4A30.01 (13)
C13—C4—C4A—C517.25 (17)C11—C11A—C11B—C4A−89.77 (14)
C3—C4—C4A—C5−104.12 (13)C2—C1—C11B—O1232.57 (15)
C13—C4—C4A—C11B126.38 (12)C2—C1—C11B—C11A160.29 (14)
C3—C4—C4A—C11B5.01 (12)C2—C1—C11B—C4A−71.75 (15)
C4—C4A—C5—O5−49.29 (19)C5—C4A—C11B—O1282.53 (11)
C11B—C4A—C5—O5−159.17 (14)C4—C4A—C11B—O12−40.49 (11)
C4—C4A—C5—N6132.54 (12)C5—C4A—C11B—C11A−32.47 (12)
C11B—C4A—C5—N622.66 (13)C4—C4A—C11B—C11A−155.48 (11)
O5—C5—N6—C73.1 (2)C5—C4A—C11B—C1−171.63 (11)
C4A—C5—N6—C7−178.69 (14)C4—C4A—C11B—C165.35 (13)
O5—C5—N6—C11A177.51 (13)C2—C3—O12—C11B50.39 (12)
C4A—C5—N6—C11A−4.29 (16)C4—C3—O12—C11B−58.82 (11)
C5—N6—C7—C8−152.76 (19)C11A—C11B—O12—C3171.91 (11)
C11A—N6—C7—C833.4 (3)C1—C11B—O12—C3−50.81 (12)
N6—C7—C8—C943.2 (3)C4A—C11B—O12—C361.51 (11)
C7—C8—C9—C10−81.4 (3)C4A—C4—C13—O13−91.08 (18)
C8—C9—C10—C1162.4 (3)C3—C4—C13—O1323.1 (2)
C9—C10—C11—C11A−48.4 (3)C4A—C4—C13—O1491.77 (14)
C5—N6—C11A—C11B−16.60 (16)C3—C4—C13—O14−154.06 (12)
C7—N6—C11A—C11B157.66 (15)O13—C13—O14—C141.6 (2)
C5—N6—C11A—C11103.02 (16)C4—C13—O14—C14178.86 (16)
C7—N6—C11A—C11−82.7 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1···O5i0.932.593.4576 (19)156
C3—H3···O13ii0.982.553.5259 (19)174
C4A—H4A···O14iii0.982.513.4190 (17)154
C14—H14A···O5iv0.962.563.279 (2)132
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1O5i 0.932.593.4576(19)156
C3H3O13ii 0.982.553.5259(19)174
C4AH4AO14iii 0.982.513.4190(17)154
C14H14AO5iv 0.962.563.279(2)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diastereoselective synthesis of bridged polycyclic alkaloids via tandem acylation/intramolecular Diels-Alder reaction.

Authors:  Chih-Hau Chen; Gorakh S Yellol; Cheng-Hsun Tsai; Prashant B Dalvi; Chung-Ming Sun
Journal:  J Org Chem       Date:  2013-09-05       Impact factor: 4.354

3.  A convergent and stereocontrolled cycloaddition strategy toward eudesmane sesquiterpenoid: total synthesis of (±)-6β,14-epoxyeudesm-4(15)-en-1β-ol.

Authors:  Cui-Cui Wang; Wei-Dong Z Li
Journal:  J Org Chem       Date:  2012-04-18       Impact factor: 4.354

4.  Methyl (9aR*,10S*,11R*,13aS*,13bS*)-9-oxo-6,7,9,9a,10,11-hexa-hydro-5H,13bH-11,13a-ep-oxy-pyrrolo-[2',1':3,4][1,4]diazepino[2,1-a]isoindole-10-carboxyl-ate.

Authors:  Flavien A A Toze; Inga K Airiyan; Eugeniya V Nikitina; Elena A Sorokina; Victor N Khrustalev
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-05

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.