Literature DB >> 22219860

trans-Diaqua-bis-(4-fluoro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Hacali Necefoğlu, Vijdan Oztürk, Füreya Elif Ozbek, Vedat Adıgüzel, Tuncer Hökelek.   

Abstract

In the mononuclear Ni(II) title complex, [Ni(C(7)H(4)FO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Ni(II) atom, located on an inversion center, is coordinated by two nicotinamide and two 4-fluoro-benzoate ligands and two water mol-ecules in a distorted N(2)O(4) octa-hedral geometry. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 8.95 (8)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 75.01 (7)°. The water mol-ecule links the adjacent carboxyl-ate O atom via an intra-molecular O-H⋯O hydrogen bond. In the crystal, O-H⋯O, N-H⋯O, C-H⋯O and C-H⋯F hydrogen bonds link the mol-ecules into a three-dimensional network. π-π stacking between parallel pyridine rings [centroid-centroid distance = 3.7287 (11) Å] is also observed.

Entities:  

Year:  2011        PMID: 22219860      PMCID: PMC3247555          DOI: 10.1107/S1600536811044771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶); Hökelek & Necefoğlu (1998 ▶, 2007) ▶; Necefoğlu et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Ni(C7H4FO2)2(C6H6N2O)2(H2O)2] M = 617.18 Monoclinic, a = 12.2001 (5) Å b = 8.8473 (4) Å c = 17.1341 (5) Å β = 136.080 (2)° V = 1282.86 (10) Å3 Z = 2 Mo Kα radiation μ = 0.83 mm−1 T = 100 K 0.29 × 0.22 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.803, T max = 0.861 11926 measured reflections 3220 independent reflections 2874 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.077 S = 1.04 3220 reflections 203 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.57 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811044771/xu5359sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044771/xu5359Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C7H4FO2)2(C6H6N2O)2(H2O)2]F(000) = 636
Mr = 617.18Dx = 1.598 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6642 reflections
a = 12.2001 (5) Åθ = 2.4–28.5°
b = 8.8473 (4) ŵ = 0.83 mm1
c = 17.1341 (5) ÅT = 100 K
β = 136.080 (2)°Block, blue
V = 1282.86 (10) Å30.29 × 0.22 × 0.18 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3220 independent reflections
Radiation source: fine-focus sealed tube2874 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 28.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −16→16
Tmin = 0.803, Tmax = 0.861k = −11→11
11926 measured reflectionsl = −22→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.038P)2 + 0.689P] where P = (Fo2 + 2Fc2)/3
3220 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.57 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.50000.50000.00935 (8)
O10.18950 (11)0.45525 (13)0.66805 (8)0.0129 (2)
O20.35932 (12)0.35155 (14)0.66999 (8)0.0182 (2)
O30.04376 (12)1.15787 (12)0.34180 (8)0.0152 (2)
O40.11757 (12)0.41708 (13)0.46215 (8)0.0127 (2)
H410.088 (2)0.333 (2)0.4293 (16)0.020 (5)*
H420.209 (3)0.398 (3)0.532 (2)0.049 (7)*
N10.08897 (13)0.71649 (14)0.52032 (9)0.0114 (2)
N2−0.00057 (17)0.93579 (17)0.26006 (11)0.0180 (3)
H210.003 (2)0.841 (3)0.2615 (17)0.030 (6)*
H22−0.033 (3)0.984 (3)0.203 (2)0.037 (6)*
F10.65268 (11)0.13200 (13)1.13785 (7)0.0274 (2)
C10.31188 (15)0.37925 (17)0.71362 (11)0.0124 (3)
C20.40420 (15)0.31422 (18)0.82813 (11)0.0132 (3)
C30.36738 (18)0.3548 (2)0.88572 (12)0.0192 (3)
H30.28660.42360.85380.023*
C40.45092 (19)0.2929 (2)0.99065 (12)0.0229 (4)
H40.42700.31901.02960.027*
C50.56940 (17)0.1923 (2)1.03506 (11)0.0185 (3)
C60.60852 (17)0.14784 (19)0.98051 (12)0.0176 (3)
H60.68850.07791.01270.021*
C70.52424 (16)0.21111 (18)0.87575 (11)0.0152 (3)
H70.54870.18400.83720.018*
C80.18734 (16)0.78640 (18)0.62049 (11)0.0130 (3)
H80.21780.73580.68130.016*
C90.24541 (16)0.93048 (18)0.63733 (11)0.0141 (3)
H90.31440.97500.70820.017*
C100.19927 (17)1.00725 (17)0.54715 (12)0.0130 (3)
H100.23531.10480.55600.016*
C110.09784 (15)0.93567 (17)0.44284 (11)0.0107 (3)
C120.04647 (15)0.79094 (17)0.43349 (11)0.0112 (3)
H12−0.02050.74300.36390.013*
C130.04432 (16)1.01818 (17)0.34384 (11)0.0121 (3)
U11U22U33U12U13U23
Ni10.01259 (13)0.00808 (15)0.00725 (12)−0.00057 (10)0.00710 (10)0.00028 (9)
O10.0143 (4)0.0119 (5)0.0089 (4)0.0004 (4)0.0072 (4)0.0005 (4)
O20.0158 (5)0.0271 (7)0.0124 (4)0.0011 (5)0.0104 (4)0.0016 (5)
O30.0245 (5)0.0088 (5)0.0148 (4)−0.0002 (4)0.0149 (4)0.0003 (4)
O40.0166 (5)0.0115 (6)0.0104 (4)−0.0011 (4)0.0098 (4)−0.0014 (4)
N10.0136 (5)0.0107 (6)0.0113 (5)−0.0001 (5)0.0094 (4)0.0003 (5)
N20.0330 (7)0.0096 (7)0.0146 (6)−0.0006 (6)0.0183 (6)0.0000 (5)
F10.0278 (5)0.0348 (6)0.0115 (4)0.0072 (5)0.0114 (4)0.0094 (4)
C10.0127 (6)0.0111 (7)0.0097 (5)−0.0039 (6)0.0068 (5)−0.0015 (5)
C20.0127 (6)0.0146 (8)0.0098 (5)−0.0017 (6)0.0073 (5)−0.0007 (5)
C30.0187 (7)0.0240 (9)0.0143 (6)0.0063 (7)0.0117 (6)0.0035 (6)
C40.0254 (7)0.0318 (10)0.0152 (6)0.0062 (8)0.0159 (6)0.0027 (7)
C50.0176 (6)0.0214 (9)0.0092 (6)0.0001 (7)0.0072 (5)0.0030 (6)
C60.0143 (6)0.0181 (8)0.0147 (6)0.0036 (6)0.0086 (5)0.0032 (6)
C70.0146 (6)0.0169 (8)0.0135 (6)−0.0008 (6)0.0100 (5)−0.0004 (6)
C80.0154 (6)0.0130 (8)0.0103 (5)0.0009 (6)0.0091 (5)0.0007 (5)
C90.0164 (6)0.0140 (8)0.0103 (5)−0.0015 (6)0.0091 (5)−0.0018 (6)
C100.0163 (6)0.0097 (7)0.0139 (6)−0.0016 (6)0.0112 (6)−0.0011 (5)
C110.0130 (6)0.0110 (7)0.0105 (5)0.0021 (6)0.0092 (5)0.0023 (5)
C120.0132 (6)0.0112 (7)0.0097 (5)0.0001 (6)0.0085 (5)−0.0004 (5)
C130.0146 (6)0.0122 (7)0.0114 (6)0.0001 (6)0.0100 (5)0.0005 (5)
Ni1—O12.0500 (9)C2—C71.386 (2)
Ni1—O1i2.0500 (9)C3—C41.390 (2)
Ni1—O42.0872 (10)C3—H30.9300
Ni1—O4i2.0872 (10)C4—H40.9300
Ni1—N12.1033 (13)C5—C41.369 (2)
Ni1—N1i2.1033 (13)C6—C51.378 (2)
O1—C11.2695 (18)C6—C71.3906 (19)
O2—C11.2560 (16)C6—H60.9300
O3—C131.2363 (18)C7—H70.9300
O4—H410.84 (2)C8—C91.384 (2)
O4—H420.88 (3)C8—H80.9300
N1—C81.3421 (17)C9—C101.3830 (19)
N1—C121.3435 (17)C9—H90.9300
N2—C131.3264 (19)C10—C111.3930 (19)
N2—H210.84 (2)C10—H100.9300
N2—H220.86 (2)C12—C111.383 (2)
F1—C51.3570 (16)C12—H120.9300
C1—C21.5051 (18)C13—C111.4970 (18)
C2—C31.3939 (19)
O1i—Ni1—O1180.0C4—C3—C2120.28 (14)
O1—Ni1—O492.09 (4)C4—C3—H3119.9
O1i—Ni1—O487.91 (4)C3—C4—H4120.9
O1—Ni1—O4i87.91 (4)C5—C4—C3118.16 (13)
O1i—Ni1—O4i92.09 (4)C5—C4—H4120.9
O1—Ni1—N191.03 (4)F1—C5—C4118.72 (13)
O1i—Ni1—N188.97 (4)F1—C5—C6117.82 (14)
O1—Ni1—N1i88.97 (4)C4—C5—C6123.46 (13)
O1i—Ni1—N1i91.03 (4)C5—C6—C7117.73 (14)
O4—Ni1—O4i180.00 (5)C5—C6—H6121.1
O4—Ni1—N189.05 (4)C7—C6—H6121.1
O4i—Ni1—N190.95 (4)C2—C7—C6120.67 (13)
O4—Ni1—N1i90.95 (4)C2—C7—H7119.7
O4i—Ni1—N1i89.05 (4)C6—C7—H7119.7
N1i—Ni1—N1180.00 (8)N1—C8—C9122.88 (13)
C1—O1—Ni1127.09 (9)N1—C8—H8118.6
Ni1—O4—H41117.0 (13)C9—C8—H8118.6
Ni1—O4—H4297.2 (15)C8—C9—H9120.5
H41—O4—H42105 (2)C10—C9—C8118.96 (13)
C8—N1—Ni1120.72 (9)C10—C9—H9120.5
C8—N1—C12117.81 (13)C9—C10—C11118.73 (14)
C12—N1—Ni1121.44 (9)C9—C10—H10120.6
C13—N2—H21123.2 (14)C11—C10—H10120.6
C13—N2—H22116.9 (15)C10—C11—C13119.43 (13)
H21—N2—H22120 (2)C12—C11—C10118.63 (12)
O1—C1—C2116.65 (12)C12—C11—C13121.92 (12)
O2—C1—O1125.40 (12)N1—C12—C11122.98 (12)
O2—C1—C2117.93 (13)N1—C12—H12118.5
C3—C2—C1120.28 (13)C11—C12—H12118.5
C7—C2—C1120.01 (12)O3—C13—N2121.96 (13)
C7—C2—C3119.70 (13)O3—C13—C11120.56 (12)
C2—C3—H3119.9N2—C13—C11117.48 (14)
O4—Ni1—O1—C1−10.42 (12)O2—C1—C2—C7−8.4 (2)
O4i—Ni1—O1—C1169.58 (12)C1—C2—C3—C4178.94 (15)
N1—Ni1—O1—C1−99.50 (12)C7—C2—C3—C40.3 (2)
N1i—Ni1—O1—C180.50 (12)C1—C2—C7—C6−178.74 (14)
O1—Ni1—N1—C8−24.63 (11)C3—C2—C7—C6−0.1 (2)
O1i—Ni1—N1—C8155.37 (11)C2—C3—C4—C50.2 (3)
O1—Ni1—N1—C12157.13 (10)F1—C5—C4—C3179.47 (15)
O1i—Ni1—N1—C12−22.87 (10)C6—C5—C4—C3−1.0 (3)
O4—Ni1—N1—C8−116.70 (11)C7—C6—C5—F1−179.28 (14)
O4i—Ni1—N1—C863.30 (11)C7—C6—C5—C41.2 (3)
O4—Ni1—N1—C1265.06 (10)C5—C6—C7—C2−0.6 (2)
O4i—Ni1—N1—C12−114.94 (10)N1—C8—C9—C100.7 (2)
Ni1—O1—C1—O220.1 (2)C8—C9—C10—C11−1.0 (2)
Ni1—O1—C1—C2−158.24 (10)C9—C10—C11—C120.4 (2)
Ni1—N1—C8—C9−178.10 (10)C9—C10—C11—C13178.87 (13)
C12—N1—C8—C90.2 (2)N1—C12—C11—C100.5 (2)
Ni1—N1—C12—C11177.43 (10)N1—C12—C11—C13−177.86 (12)
C8—N1—C12—C11−0.86 (19)O3—C13—C11—C10−23.7 (2)
O1—C1—C2—C3−8.6 (2)O3—C13—C11—C12154.64 (13)
O1—C1—C2—C7170.00 (14)N2—C13—C11—C10155.73 (14)
O2—C1—C2—C3172.92 (14)N2—C13—C11—C12−25.9 (2)
D—H···AD—HH···AD···AD—H···A
N2—H21···O3ii0.84 (3)2.15 (3)2.8363 (19)139 (2)
N2—H22···O4iii0.86 (3)2.28 (3)2.955 (2)135 (2)
O4—H41···O3iv0.841 (18)1.94 (2)2.7654 (16)166 (3)
O4—H42···O20.88 (3)1.70 (2)2.5663 (14)168 (4)
C6—H6···O4v0.932.523.402 (3)159
C8—H8···F1vi0.932.533.1358 (18)123
C9—H9···F1vi0.932.553.129 (2)121
C10—H10···O2vii0.932.573.4060 (19)150
Table 1

Selected bond lengths (Å)

Ni1—O12.0500 (9)
Ni1—O42.0872 (10)
Ni1—N12.1033 (13)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O3i0.84 (3)2.15 (3)2.8363 (19)139 (2)
N2—H22⋯O4ii0.86 (3)2.28 (3)2.955 (2)135 (2)
O4—H41⋯O3iii0.841 (18)1.94 (2)2.7654 (16)166 (3)
O4—H42⋯O20.88 (3)1.70 (2)2.5663 (14)168 (4)
C6—H6⋯O4iv0.932.523.402 (3)159
C8—H8⋯F1v0.932.533.1358 (18)123
C9—H9⋯F1v0.932.553.129 (2)121
C10—H10⋯O2vi0.932.573.4060 (19)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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