Literature DB >> 22219791

The one-dimensional coordination polymer poly[tetra-kis-[(4-chloro-phen-yl)methanaminium] [cadmate-μ-cyclo-hexa-phospho-rato]].

Sonia Abid, S Salem Al-Deyab, Mohamed Rzaigui.   

Abstract

Cyclo-hexa-phospho-ric acid (P(6)O(18)H(6)) reacts with cadmium carbonate and 4-chloro-benzyl-amine (CBA) to give the mononuclear title complex, (C(7)H(9)ClN)(4)[Cd(P(6)O(18))](n), in which the Cd(II) atom, lying on an inversion centre, has an octa-hedral coordination built of six O atoms of two centrosymmetric P(6)O(18) rings. Each P(6)O(18) ligand acts as a bridge, linking two Cd(II) atoms and forming an anionic coordination polymer [Cd(P(6)O(18))(4-)](n) extending along [010]. Adjacent polymeric chains are connected through N-H⋯O and C-H⋯O hydrogen bonds, generating a three-dimensional supra-molecular network.

Entities:  

Year:  2011        PMID: 22219791      PMCID: PMC3246971          DOI: 10.1107/S160053681104133X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal chemistry of condensed phosphates, see: Averbuch-Pouchot & Durif (1996 ▶); Durif (2005 ▶). For general background to supra­molecular complexes, see: Kolotuchin et al. (1995 ▶); Tong et al. (1999 ▶). For Cl⋯Cl inter­actions, see: Hathwar et al. (2010 ▶) and for π–π inter­actions, see: Janiak et al. (2000 ▶). For the synthesis, see: Schülke & Kayser (1985 ▶). For related structures, see: Du et al. (2010 ▶); Hu et al. (2008 ▶); Kontturi et al. (2005 ▶); Man et al. (2006 ▶).

Experimental

Crystal data

(C7H9ClN)4[Cd(P6O18)] M = 1156.63 Triclinic, a = 8.021 (4) Å b = 8.1696 (16) Å c = 17.919 (3) Å α = 87.31 (5)° β = 88.914 (19)° γ = 70.100 (3)° V = 1102.9 (6) Å3 Z = 1 Mo Kα radiation μ = 1.03 mm−1 T = 293 K 0.22 × 0.20 × 0.18 mm

Data collection

Enraf–Nonius TurboCAD-4 diffractometer 3873 measured reflections 3770 independent reflections 3506 reflections with I > 2σ(I) R int = 0.009 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.074 S = 1.14 3770 reflections 277 parameters H-atom parameters constrained Δρmax = 0.76 e Å−3 Δρmin = −0.57 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681104133X/ff2028sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681104133X/ff2028Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C7H9ClN)4[Cd(P6O18)]Z = 1
Mr = 1156.63F(000) = 582
Triclinic, P1Dx = 1.741 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.021 (4) ÅCell parameters from 25 reflections
b = 8.1696 (16) Åθ = 9.1–10.8°
c = 17.919 (3) ŵ = 1.03 mm1
α = 87.31 (5)°T = 293 K
β = 88.914 (19)°Prism, colourless
γ = 70.100 (3)°0.22 × 0.20 × 0.18 mm
V = 1102.9 (6) Å3
Enraf–Nonius TurboCAD-4 diffractometerRint = 0.009
Radiation source: Enraf Nonius FR590θmax = 28.0°, θmin = 2.3°
graphiteh = −9→10
non–profiled ω scansk = 0→10
3873 measured reflectionsl = −5→23
3770 independent reflections2 standard reflections every 120 min
3506 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0373P)2 + 0.863P] where P = (Fo2 + 2Fc2)/3
3770 reflections(Δ/σ)max = 0.022
277 parametersΔρmax = 0.76 e Å3
0 restraintsΔρmin = −0.57 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.67291 (7)0.07788 (7)0.58321 (4)0.02160 (17)
P20.31753 (7)0.30435 (7)0.62408 (4)0.02213 (17)
P30.21259 (7)0.28764 (8)0.46566 (4)0.02360 (18)
O10.8257 (2)0.0489 (2)0.63383 (12)0.0306 (5)
O20.6552 (2)0.1994 (2)0.51710 (12)0.0278 (5)
O30.4957 (2)0.1402 (2)0.63318 (13)0.0332 (5)
O40.6588 (2)−0.1001 (2)0.55819 (13)0.0321 (6)
O50.3676 (2)0.4624 (2)0.60678 (11)0.0265 (5)
O60.2085 (2)0.3003 (2)0.69060 (12)0.0316 (5)
O70.2237 (3)0.2579 (3)0.55466 (12)0.0354 (6)
O80.0311 (2)0.3219 (2)0.44049 (13)0.0390 (6)
O90.3052 (2)0.4116 (2)0.43979 (12)0.0295 (5)
Cd0.50000.50000.50000.02314 (9)
N10.8521 (3)0.3592 (3)0.68090 (16)0.0336 (6)
H1A0.86050.25650.66330.050*
H1B0.96030.36170.68920.050*
H1C0.79690.44380.64760.050*
C10.7286 (4)0.5549 (4)0.7877 (2)0.0373 (9)
C20.7656 (4)0.6922 (4)0.7522 (2)0.0452 (10)
H20.81300.68030.70420.054*
C30.7325 (5)0.8486 (5)0.7875 (2)0.0500 (10)
H30.75410.94240.76310.060*
C40.6673 (5)0.8608 (5)0.8592 (2)0.0564 (12)
C50.6306 (6)0.7272 (6)0.8958 (3)0.0661 (13)
H50.58520.73910.94420.079*
C60.6619 (5)0.5735 (5)0.8598 (2)0.0522 (11)
H60.63770.48130.88440.063*
C70.7503 (5)0.3849 (4)0.7516 (2)0.0502 (11)
H7A0.80920.28930.78670.060*
H7B0.63360.37990.74200.060*
Cl10.6261 (2)1.05722 (18)0.90321 (8)0.1103 (6)
N20.8179 (3)0.1736 (3)0.37553 (14)0.0286 (6)
H2A0.77560.15340.42000.043*
H2B0.82550.28000.37340.043*
H2C0.92510.09520.36890.043*
C80.7590 (4)0.1923 (4)0.24011 (19)0.0358 (8)
C90.8004 (5)0.0633 (5)0.1879 (2)0.0564 (12)
H90.7943−0.04560.20190.068*
C100.8495 (7)0.0933 (6)0.1169 (3)0.0694 (15)
H100.87500.00590.08260.083*
C110.8614 (6)0.2538 (6)0.0958 (2)0.0589 (12)
C120.8237 (5)0.3838 (5)0.1459 (2)0.0558 (11)
H120.83250.49150.13170.067*
C130.7730 (4)0.3532 (4)0.2169 (2)0.0453 (10)
H130.74720.44160.25070.054*
C140.6978 (4)0.1610 (4)0.3163 (2)0.0401 (9)
H14A0.58080.24540.32440.048*
H14B0.68770.04600.31980.048*
Cl20.9233 (3)0.2940 (2)0.00535 (8)0.1069 (6)
U11U22U33U12U13U23
P10.0171 (2)0.0128 (2)0.0337 (4)−0.0031 (2)0.0003 (3)−0.0040 (3)
P20.0190 (2)0.0152 (3)0.0315 (4)−0.0047 (2)0.0032 (3)−0.0051 (3)
P30.0204 (2)0.0144 (3)0.0364 (4)−0.0057 (2)−0.0049 (3)−0.0045 (4)
O10.0246 (8)0.0235 (8)0.0421 (13)−0.0050 (7)−0.0056 (8)−0.0079 (10)
O20.0262 (8)0.0182 (8)0.0356 (13)−0.0035 (6)0.0047 (8)−0.0001 (10)
O30.0249 (8)0.0201 (8)0.0471 (15)0.0005 (7)0.0114 (9)0.0041 (11)
O40.0235 (7)0.0152 (7)0.0566 (16)−0.0043 (6)−0.0065 (9)−0.0078 (11)
O50.0288 (8)0.0161 (7)0.0355 (12)−0.0084 (6)0.0038 (8)−0.0060 (10)
O60.0268 (8)0.0288 (9)0.0387 (13)−0.0085 (7)0.0084 (8)−0.0065 (11)
O70.0427 (10)0.0386 (11)0.0354 (14)−0.0273 (9)−0.0031 (9)−0.0022 (12)
O80.0230 (8)0.0293 (9)0.0635 (17)−0.0050 (7)−0.0104 (9)−0.0154 (12)
O90.0334 (8)0.0195 (8)0.0392 (13)−0.0133 (7)−0.0079 (9)−0.0007 (10)
Cd0.02384 (11)0.01532 (11)0.03217 (18)−0.00887 (9)−0.00109 (10)−0.00258 (13)
N10.0303 (10)0.0249 (10)0.0464 (17)−0.0101 (9)−0.0057 (11)−0.0041 (13)
C10.0316 (12)0.0382 (15)0.043 (2)−0.0126 (12)−0.0013 (13)−0.0018 (19)
C20.0535 (17)0.0464 (18)0.042 (2)−0.0242 (15)0.0066 (16)−0.012 (2)
C30.068 (2)0.0419 (17)0.047 (3)−0.0273 (17)0.0068 (18)−0.006 (2)
C40.074 (2)0.050 (2)0.049 (3)−0.0237 (19)0.009 (2)−0.015 (2)
C50.091 (3)0.070 (3)0.042 (3)−0.032 (2)0.017 (2)−0.012 (3)
C60.066 (2)0.049 (2)0.044 (3)−0.0245 (18)0.006 (2)0.008 (2)
C70.0545 (18)0.0404 (17)0.062 (3)−0.0249 (15)0.0130 (18)−0.008 (2)
Cl10.1789 (15)0.0753 (8)0.0887 (11)−0.0554 (9)0.0468 (10)−0.0485 (9)
N20.0239 (9)0.0246 (10)0.0353 (15)−0.0048 (8)0.0001 (9)−0.0065 (12)
C80.0382 (13)0.0338 (14)0.0370 (19)−0.0138 (12)−0.0073 (13)−0.0016 (17)
C90.081 (2)0.0355 (17)0.053 (3)−0.0185 (17)−0.008 (2)−0.010 (2)
C100.112 (3)0.048 (2)0.045 (3)−0.022 (2)0.002 (2)−0.015 (3)
C110.082 (3)0.064 (2)0.030 (2)−0.025 (2)0.0006 (19)0.003 (3)
C120.072 (2)0.0465 (19)0.054 (3)−0.0269 (18)−0.006 (2)0.000 (2)
C130.0578 (18)0.0387 (17)0.045 (2)−0.0227 (15)0.0010 (16)−0.009 (2)
C140.0350 (13)0.0433 (16)0.048 (2)−0.0211 (12)−0.0060 (14)−0.0035 (19)
Cl20.1687 (16)0.1080 (12)0.0444 (8)−0.0486 (12)0.0145 (9)−0.0017 (10)
P1—O11.4846 (19)C3—C41.372 (6)
P1—O21.486 (2)C3—H30.9300
P1—O41.5822 (16)C4—C51.362 (6)
P1—O31.607 (2)C4—Cl11.748 (3)
P2—O61.471 (2)C5—C61.383 (5)
P2—O51.4947 (18)C5—H50.9300
P2—O71.5909 (19)C6—H60.9300
P2—O31.5975 (18)C7—H7A0.9700
P3—O81.4614 (18)C7—H7B0.9700
P3—O91.499 (2)N2—C141.478 (3)
P3—O4i1.6009 (16)N2—H2A0.8900
P3—O71.601 (2)N2—H2B0.8900
O2—Cd2.3534 (18)N2—H2C0.8900
O4—P3i1.6009 (16)C8—C91.392 (4)
O5—Cd2.230 (2)C8—C131.401 (5)
O9—Cd2.2432 (17)C8—C141.482 (5)
Cd—O5ii2.230 (2)C9—C101.361 (6)
Cd—O9ii2.2432 (17)C9—H90.9300
Cd—O2ii2.3534 (18)C10—C111.382 (7)
N1—C71.478 (4)C10—H100.9300
N1—H1A0.8900C11—C121.374 (5)
N1—H1B0.8900C11—Cl21.735 (5)
N1—H1C0.8900C12—C131.365 (5)
C1—C21.380 (5)C12—H120.9300
C1—C61.383 (5)C13—H130.9300
C1—C71.515 (4)C14—H14A0.9700
C2—C31.393 (4)C14—H14B0.9700
C2—H20.9300
O1—P1—O2117.93 (12)C3—C2—H2119.7
O1—P1—O4111.66 (10)C4—C3—C2118.4 (4)
O2—P1—O4109.88 (11)C4—C3—H3120.8
O1—P1—O3107.43 (12)C2—C3—H3120.8
O2—P1—O3109.96 (11)C5—C4—C3122.2 (3)
O4—P1—O398.11 (10)C5—C4—Cl1119.5 (3)
O6—P2—O5118.97 (11)C3—C4—Cl1118.2 (3)
O6—P2—O7107.58 (11)C4—C5—C6118.8 (4)
O5—P2—O7111.28 (13)C4—C5—H5120.6
O6—P2—O3106.68 (13)C6—C5—H5120.6
O5—P2—O3108.08 (11)C5—C6—C1121.0 (4)
O7—P2—O3102.99 (12)C5—C6—H6119.5
O8—P3—O9118.36 (13)C1—C6—H6119.5
O8—P3—O4i111.32 (9)N1—C7—C1114.6 (3)
O9—P3—O4i104.99 (10)N1—C7—H7A108.6
O8—P3—O7110.18 (13)C1—C7—H7A108.6
O9—P3—O7110.64 (11)N1—C7—H7B108.6
O4i—P3—O799.62 (12)C1—C7—H7B108.6
P1—O2—Cd131.47 (10)H7A—C7—H7B107.6
P2—O3—P1131.59 (16)C14—N2—H2A109.5
P1—O4—P3i138.76 (11)C14—N2—H2B109.5
P2—O5—Cd122.36 (10)H2A—N2—H2B109.5
P2—O7—P3139.86 (14)C14—N2—H2C109.5
P3—O9—Cd129.75 (13)H2A—N2—H2C109.5
O5—Cd—O5ii180.0H2B—N2—H2C109.5
O5—Cd—O988.19 (7)C9—C8—C13117.2 (4)
O5ii—Cd—O991.81 (7)C9—C8—C14121.0 (3)
O5—Cd—O9ii91.81 (7)C13—C8—C14121.8 (3)
O5ii—Cd—O9ii88.19 (7)C10—C9—C8121.4 (4)
O9—Cd—O9ii180.00 (10)C10—C9—H9119.3
O5—Cd—O283.53 (8)C8—C9—H9119.3
O5ii—Cd—O296.47 (8)C9—C10—C11119.8 (3)
O9—Cd—O283.70 (7)C9—C10—H10120.1
O9ii—Cd—O296.30 (7)C11—C10—H10120.1
O5—Cd—O2ii96.47 (8)C12—C11—C10120.5 (4)
O5ii—Cd—O2ii83.53 (8)C12—C11—Cl2119.2 (4)
O9—Cd—O2ii96.30 (7)C10—C11—Cl2120.3 (3)
O9ii—Cd—O2ii83.70 (7)C13—C12—C11119.3 (4)
O2—Cd—O2ii180.000 (1)C13—C12—H12120.3
C7—N1—H1A109.5C11—C12—H12120.3
C7—N1—H1B109.5C12—C13—C8121.7 (3)
H1A—N1—H1B109.5C12—C13—H13119.2
C7—N1—H1C109.5C8—C13—H13119.2
H1A—N1—H1C109.5N2—C14—C8113.1 (2)
H1B—N1—H1C109.5N2—C14—H14A109.0
C2—C1—C6118.9 (3)C8—C14—H14A109.0
C2—C1—C7123.9 (3)N2—C14—H14B109.0
C6—C1—C7117.2 (3)C8—C14—H14B109.0
C1—C2—C3120.7 (3)H14A—C14—H14B107.8
C1—C2—H2119.7
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.891.912.785 (3)167
N1—H1B···O6iii0.891.882.740 (3)162
N1—H1C···O9ii0.891.932.809 (4)168
N2—H2A···O20.891.962.814 (4)160
N2—H2B···O5ii0.892.192.866 (3)133
N2—H2C···O1iv0.891.952.824 (3)169
C3—H3···O1v0.932.563.339 (5)142
C13—H13···O6ii0.932.533.394 (4)154
C14—H14B···O3i0.972.563.410 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O10.891.912.785 (3)167
N1—H1B⋯O6i0.891.882.740 (3)162
N1—H1C⋯O9ii0.891.932.809 (4)168
N2—H2A⋯O20.891.962.814 (4)160
N2—H2B⋯O5ii0.892.192.866 (3)133
N2—H2C⋯O1iii0.891.952.824 (3)169
C3—H3⋯O1iv0.932.563.339 (5)142
C13—H13⋯O6ii0.932.533.394 (4)154
C14—H14B⋯O3v0.972.563.410 (4)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structures of bisphosphonate metal complexes: zinc and cadmium complexes of clodronate and its partial ester derivatives.

Authors:  Mervi Kontturi; Elina Laurila; Riikka Mattsson; Sirpa Peräniemi; Jouko J Vepsäläinen; Markku Ahlgrén
Journal:  Inorg Chem       Date:  2005-04-04       Impact factor: 5.165

  2 in total
  3 in total

1.  Poly[bis-(piperazine-1,4-diium) [(μ4-cyclo-hexa-phosphato)dilithium] tetra-hydrate].

Authors:  Iness Ameur; Sonia Abid; Salem S Al-Deyab; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-11

2.  Dilithium disodium nickel(II) cyclo-hexa-phosphate dodeca-hydrate, Li(2)Na(2)NiP(6)O(18)·12H(2)O.

Authors:  Sonia Abid; Salem S Al-Deyab; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07

3.  Bis[1-(2,3-di-methyl-phen-yl)piperazine-1,4-diium] bis-(oxonium) cyclo-hexa-phosphate dihydrate.

Authors:  Iness Ameur; Sonia Abid; Salem S Al-Deyab; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-22
  3 in total

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