Literature DB >> 24046694

Bis[1-(2,3-di-methyl-phen-yl)piperazine-1,4-diium] bis-(oxonium) cyclo-hexa-phosphate dihydrate.

Iness Ameur1, Sonia Abid, Salem S Al-Deyab, Mohamed Rzaigui.   

Abstract

In the title compound, 2C12H20N2 (2+)·2H3O(+)·P6O18 (6-)·2H2O, a protonated water mol-ecule bridges the centrosymmetrical anionic P6O18 ring via O-H⋯O hydrogen bonds. The centrosymmetric hydrogen-bonded rings formed by four oxonium cations and four phosphate anions can be described by an R 4 (8)(36) graph-set motif. The ring motifs are connected by hydrogen bonds into inorganic layers perpendicular to [100]. The 1-(2,3-di-methyl-phen-yl)piperazine-1,4-diium cations are located between the layers, compensating their negative charge and establishing N-H⋯O hydrogen bonds with the O atoms of the anionic framework.

Entities:  

Year:  2013        PMID: 24046694      PMCID: PMC3770409          DOI: 10.1107/S1600536813016759

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the chemistry of cyclo­hexa­phosphate, see: Durif (1995 ▶); Amri et al. (2008 ▶); Marouani et al. (2010 ▶). For applications of piperazine derivatives, see: Kaur et al. (2010 ▶); Eswaran et al. (2010 ▶); Chou et al. (2010 ▶); Chen et al. (2004 ▶); Shingalapur et al. (2009 ▶). For related structures with cyclo­hexa­phosphate rings, see: Abid et al. (2011 ▶); Ameur et al. (2013 ▶); Amri et al. (2009 ▶). For related structures with 1-phenyl­piperazine-1,4-diium salts, see: Marouani et al. (2010 ▶); Ben Gharbia et al. (2005 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For graph-set descriptions of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For the synthesis of the precursor, see: Schülke & Kayser (1985 ▶).

Experimental

Crystal data

2C12H20N2 2+·2H3O+·P6O18 6−·2H2O M = 932.50 Monoclinic, a = 8.630 (6) Å b = 14.495 (4) Å c = 17.072 (3) Å β = 114.93 (4)° V = 1936.6 (15) Å3 Z = 2 Ag Kα radiation λ = 0.56085 Å μ = 0.20 mm−1 T = 293 K 0.60 × 0.40 × 0.10 mm

Data collection

Nonius MACH-3 diffractometer Absorption correction: refined from ΔF (Walker & Stuart, 1983 ▶) T min = 0.892, T max = 0.981 12060 measured reflections 9442 independent reflections 5475 reflections with I > 2σ(I) R int = 0.031 2 standard reflections every 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.152 S = 0.99 9442 reflections 253 parameters H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −0.67 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016759/jj2168sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016759/jj2168Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C12H20N22+·2H3O+·P6O186·2H2OF(000) = 976
Mr = 932.50Dx = 1.599 Mg m3
Monoclinic, P21/cAg Kα radiation, λ = 0.56085 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 8.630 (6) Åθ = 9.3–10.5°
b = 14.495 (4) ŵ = 0.20 mm1
c = 17.072 (3) ÅT = 293 K
β = 114.93 (4)°Prism, colourless
V = 1936.6 (15) Å30.60 × 0.40 × 0.10 mm
Z = 2
Nonius MACH-3 diffractometer5475 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 28.0°, θmin = 2.1°
non–profiled ω scansh = −14→14
Absorption correction: part of the refinement model (ΔF) (Walker & Stuart, 1983)k = −24→2
Tmin = 0.892, Tmax = 0.981l = −28→16
12060 measured reflections2 standard reflections every 120 min
9442 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0763P)2] where P = (Fo2 + 2Fc2)/3
9442 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −0.67 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.31249 (5)0.34945 (3)−0.07303 (3)0.02004 (9)
P20.37416 (6)0.39535 (3)0.10432 (3)0.02228 (10)
P30.69777 (6)0.49655 (3)0.18679 (3)0.02396 (10)
O10.42651 (16)0.30040 (10)−0.10364 (9)0.0287 (3)
O20.14736 (17)0.30794 (10)−0.08650 (11)0.0345 (3)
O30.2778 (2)0.45146 (10)−0.11034 (11)0.0385 (4)
O40.42266 (17)0.36921 (13)0.02683 (9)0.0403 (4)
O50.19648 (16)0.42960 (10)0.07175 (10)0.0321 (3)
O60.4264 (2)0.31760 (10)0.16614 (10)0.0351 (3)
O70.49427 (17)0.48166 (9)0.14480 (10)0.0325 (3)
O80.7354 (2)0.55904 (12)0.26036 (10)0.0448 (4)
O90.7852 (2)0.40717 (10)0.19877 (12)0.0419 (4)
OW11.0380 (3)0.2895 (2)0.25912 (15)0.0936 (10)
H1W10.97120.33080.24740.140*
H2W11.07900.27340.31230.140*
OW20.79099 (19)0.72073 (11)0.31371 (10)0.0372 (3)
H1W20.75810.67060.29120.056*
H2W20.81820.73600.27640.056*
H3W20.71840.75470.32090.056*
C10.8112 (2)0.37054 (13)0.00581 (13)0.0295 (4)
H1A0.69350.3897−0.01210.035*
H1B0.88240.40740.05540.035*
C20.8290 (3)0.26990 (14)0.03063 (13)0.0302 (4)
H2C0.94840.25230.05320.036*
H2D0.79070.26050.07590.036*
C30.7820 (3)0.22745 (13)−0.11665 (13)0.0282 (4)
H3A0.71340.1904−0.16670.034*
H3B0.90050.2093−0.09760.034*
C40.7625 (3)0.32817 (13)−0.14143 (14)0.0299 (4)
H4A0.80120.3384−0.18650.036*
H4B0.64290.3454−0.16400.036*
C50.7366 (2)0.10980 (12)−0.02396 (12)0.0258 (3)
C60.6060 (2)0.05226 (13)−0.07716 (12)0.0265 (3)
C70.6213 (3)−0.04254 (14)−0.05737 (14)0.0335 (4)
C80.7617 (3)−0.07472 (15)0.01414 (17)0.0421 (5)
H80.7708−0.13740.02700.051*
C90.8877 (3)−0.01554 (16)0.06639 (17)0.0433 (5)
H90.9801−0.03830.11440.052*
C100.8771 (3)0.07749 (16)0.04755 (15)0.0364 (5)
H100.96230.11780.08210.044*
C110.4528 (3)0.08562 (15)−0.15409 (13)0.0354 (4)
H130.44470.1515−0.15130.053*
H110.35170.0578−0.15440.053*
H140.46390.0690−0.20590.053*
C120.4877 (4)−0.10878 (16)−0.11266 (19)0.0477 (6)
H1220.3770−0.0866−0.12100.072*
H1210.5077−0.1680−0.08500.072*
H1230.4924−0.1144−0.16760.072*
N10.72640 (18)0.20991 (10)−0.04534 (10)0.0227 (3)
H10.61500.2273−0.06490.027*
N20.8629 (2)0.38610 (11)−0.06582 (12)0.0298 (3)
H2A0.84760.4459−0.08130.036*
H2B0.97460.3729−0.04750.036*
U11U22U33U12U13U23
P10.01473 (16)0.02149 (19)0.0252 (2)−0.00054 (15)0.00971 (15)−0.00045 (17)
P20.02042 (19)0.02102 (19)0.0271 (2)−0.00034 (15)0.01164 (17)−0.00057 (17)
P30.02164 (19)0.02002 (19)0.0283 (2)0.00048 (16)0.00867 (17)0.00217 (17)
O10.0217 (6)0.0296 (7)0.0363 (7)0.0055 (5)0.0137 (5)−0.0021 (6)
O20.0221 (6)0.0335 (7)0.0522 (9)−0.0093 (5)0.0197 (6)−0.0100 (7)
O30.0558 (10)0.0228 (6)0.0560 (10)0.0102 (6)0.0420 (8)0.0084 (7)
O40.0196 (6)0.0758 (12)0.0257 (7)0.0018 (7)0.0099 (5)−0.0072 (8)
O50.0205 (6)0.0297 (7)0.0475 (8)0.0007 (5)0.0157 (6)−0.0001 (6)
O60.0388 (8)0.0270 (7)0.0420 (8)0.0021 (6)0.0195 (7)0.0086 (6)
O70.0224 (6)0.0209 (6)0.0518 (9)−0.0013 (5)0.0132 (6)−0.0039 (6)
O80.0574 (10)0.0368 (9)0.0331 (8)−0.0078 (8)0.0122 (7)−0.0075 (7)
O90.0328 (8)0.0290 (7)0.0603 (10)0.0119 (6)0.0160 (7)0.0105 (7)
OW10.0987 (18)0.134 (2)0.0705 (14)0.0923 (17)0.0579 (14)0.0573 (15)
OW20.0349 (7)0.0385 (8)0.0389 (8)−0.0028 (6)0.0162 (7)−0.0106 (7)
C10.0236 (8)0.0264 (8)0.0393 (10)−0.0026 (7)0.0139 (8)−0.0055 (8)
C20.0283 (9)0.0289 (9)0.0304 (9)−0.0021 (7)0.0093 (7)−0.0018 (8)
C30.0316 (9)0.0249 (8)0.0363 (10)0.0015 (7)0.0223 (8)0.0021 (7)
C40.0297 (9)0.0280 (9)0.0369 (10)0.0011 (7)0.0188 (8)0.0048 (8)
C50.0272 (8)0.0216 (8)0.0324 (9)0.0038 (6)0.0164 (7)0.0035 (7)
C60.0323 (9)0.0245 (8)0.0299 (9)0.0023 (7)0.0200 (7)0.0014 (7)
C70.0459 (11)0.0222 (8)0.0442 (11)0.0000 (8)0.0305 (10)−0.0008 (8)
C80.0526 (14)0.0252 (9)0.0598 (15)0.0097 (9)0.0346 (12)0.0128 (10)
C90.0426 (12)0.0339 (11)0.0497 (13)0.0126 (9)0.0158 (10)0.0146 (10)
C100.0310 (10)0.0325 (10)0.0413 (11)0.0075 (8)0.0110 (9)0.0076 (9)
C110.0364 (10)0.0329 (10)0.0335 (10)−0.0052 (8)0.0115 (8)−0.0028 (8)
C120.0568 (15)0.0290 (10)0.0662 (17)−0.0098 (10)0.0346 (13)−0.0116 (11)
N10.0199 (6)0.0212 (6)0.0289 (7)0.0015 (5)0.0120 (6)0.0014 (6)
N20.0210 (6)0.0226 (7)0.0483 (10)0.0014 (6)0.0170 (7)0.0031 (7)
P1—O21.4729 (16)C3—H3A0.9700
P1—O11.4766 (15)C3—H3B0.9700
P1—O31.5878 (15)C4—N21.476 (3)
P1—O41.5894 (16)C4—H4A0.9700
P2—O61.4785 (15)C4—H4B0.9700
P2—O51.4792 (17)C5—C61.388 (3)
P2—O71.5855 (15)C5—C101.390 (3)
P2—O41.5924 (15)C5—N11.490 (2)
P3—O81.4696 (17)C6—C71.408 (3)
P3—O91.4696 (15)C6—C111.497 (3)
P3—O3i1.5964 (15)C7—C81.389 (3)
P3—O71.6073 (19)C7—C121.491 (3)
O3—P3i1.5964 (15)C8—C91.377 (4)
OW1—H1W10.7950C8—H80.9300
OW1—H2W10.8565C9—C101.380 (3)
OW2—H1W20.8154C9—H90.9300
OW2—H2W20.7977C10—H100.9300
OW2—H3W20.8458C11—H130.9600
C1—N21.485 (3)C11—H110.9600
C1—C21.509 (3)C11—H140.9600
C1—H1A0.9700C12—H1220.9600
C1—H1B0.9700C12—H1210.9600
C2—N11.501 (2)C12—H1230.9600
C2—H2C0.9700N1—H10.9100
C2—H2D0.9700N2—H2A0.9000
C3—N11.506 (2)N2—H2B0.9000
C3—C41.509 (3)
O2—P1—O1119.56 (9)N2—C4—H4B109.6
O2—P1—O3108.13 (9)C3—C4—H4B109.6
O1—P1—O3110.35 (8)H4A—C4—H4B108.1
O2—P1—O4110.06 (9)C6—C5—C10122.63 (18)
O1—P1—O4106.25 (9)C6—C5—N1118.49 (16)
O3—P1—O4100.89 (10)C10—C5—N1118.88 (17)
O6—P2—O5118.69 (9)C5—C6—C7117.46 (18)
O6—P2—O7110.10 (9)C5—C6—C11123.56 (17)
O5—P2—O7106.42 (9)C7—C6—C11118.97 (18)
O6—P2—O4107.69 (10)C8—C7—C6119.8 (2)
O5—P2—O4111.19 (9)C8—C7—C12119.7 (2)
O7—P2—O4101.38 (9)C6—C7—C12120.5 (2)
O8—P3—O9120.58 (11)C9—C8—C7121.2 (2)
O8—P3—O3i110.49 (10)C9—C8—H8119.4
O9—P3—O3i107.03 (9)C7—C8—H8119.4
O8—P3—O7105.68 (10)C8—C9—C10120.0 (2)
O9—P3—O7110.14 (9)C8—C9—H9120.0
O3i—P3—O7101.25 (9)C10—C9—H9120.0
P1—O3—P3i134.42 (10)C9—C10—C5118.8 (2)
P1—O4—P2133.32 (10)C9—C10—H10120.6
P2—O7—P3133.71 (9)C5—C10—H10120.6
H1W1—OW1—H2W1113.9C6—C11—H13109.5
H1W2—OW2—H2W291.8C6—C11—H11109.5
H1W2—OW2—H3W2117.1H13—C11—H11109.5
H2W2—OW2—H3W2116.2C6—C11—H14109.5
N2—C1—C2110.34 (16)H13—C11—H14109.5
N2—C1—H1A109.6H11—C11—H14109.5
C2—C1—H1A109.6C7—C12—H122109.5
N2—C1—H1B109.6C7—C12—H121109.5
C2—C1—H1B109.6H122—C12—H121109.5
H1A—C1—H1B108.1C7—C12—H123109.5
N1—C2—C1111.36 (16)H122—C12—H123109.5
N1—C2—H2C109.4H121—C12—H123109.5
C1—C2—H2C109.4C5—N1—C2113.59 (15)
N1—C2—H2D109.4C5—N1—C3110.88 (14)
C1—C2—H2D109.4C2—N1—C3109.11 (14)
H2C—C2—H2D108.0C5—N1—H1107.7
N1—C3—C4110.72 (15)C2—N1—H1107.7
N1—C3—H3A109.5C3—N1—H1107.7
C4—C3—H3A109.5C4—N2—C1111.35 (15)
N1—C3—H3B109.5C4—N2—H2A109.4
C4—C3—H3B109.5C1—N2—H2A109.4
H3A—C3—H3B108.1C4—N2—H2B109.4
N2—C4—C3110.49 (16)C1—N2—H2B109.4
N2—C4—H4A109.6H2A—N2—H2B108.0
C3—C4—H4A109.6
O2—P1—O3—P3i−116.25 (16)C5—C6—C7—C81.2 (3)
O1—P1—O3—P3i16.22 (19)C11—C6—C7—C8−179.47 (19)
O4—P1—O3—P3i128.25 (16)C5—C6—C7—C12−178.77 (18)
O2—P1—O4—P2−31.2 (2)C11—C6—C7—C120.6 (3)
O1—P1—O4—P2−162.03 (16)C6—C7—C8—C9−0.2 (3)
O3—P1—O4—P282.82 (18)C12—C7—C8—C9179.7 (2)
O6—P2—O4—P1114.23 (17)C7—C8—C9—C10−0.8 (4)
O5—P2—O4—P1−17.4 (2)C8—C9—C10—C50.8 (4)
O7—P2—O4—P1−130.16 (17)C6—C5—C10—C90.2 (3)
O6—P2—O7—P353.82 (17)N1—C5—C10—C9−178.9 (2)
O5—P2—O7—P3−176.32 (13)C6—C5—N1—C2157.24 (16)
O4—P2—O7—P3−59.98 (16)C10—C5—N1—C2−23.6 (2)
O8—P3—O7—P2−140.97 (14)C6—C5—N1—C3−79.5 (2)
O9—P3—O7—P2−9.23 (18)C10—C5—N1—C399.7 (2)
O3i—P3—O7—P2103.78 (15)C1—C2—N1—C5−178.79 (15)
N2—C1—C2—N1−56.9 (2)C1—C2—N1—C357.0 (2)
N1—C3—C4—N258.0 (2)C4—C3—N1—C5176.94 (15)
C10—C5—C6—C7−1.2 (3)C4—C3—N1—C2−57.2 (2)
N1—C5—C6—C7177.91 (16)C3—C4—N2—C1−57.5 (2)
C10—C5—C6—C11179.48 (19)C2—C1—N2—C456.8 (2)
N1—C5—C6—C11−1.4 (3)
D—H···AD—HH···AD···AD—H···A
OW1—H1W1···O90.791.842.614 (3)166
OW1—H2W1···O2ii0.861.972.781 (3)159
OW2—H1W2···O80.821.692.487 (2)167
OW2—H2W2···OW1iii0.801.772.503 (3)152
OW2—H3W2···O6iv0.851.642.481 (2)178
N1—H1···O10.911.822.690 (2)160
N2—H2A···O5i0.901.872.714 (2)156
N2—H2B···O2v0.902.102.858 (3)142
N2—H2B···O5v0.902.282.916 (3)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW1—H1W1⋯O90.791.842.614 (3)166
OW1—H2W1⋯O2i 0.861.972.781 (3)159
OW2—H1W2⋯O80.821.692.487 (2)167
OW2—H2W2⋯OW1ii 0.801.772.503 (3)152
OW2—H3W2⋯O6iii 0.851.642.481 (2)178
N1—H1⋯O10.911.822.690 (2)160
N2—H2A⋯O5iv 0.901.872.714 (2)156
N2—H2B⋯O2v 0.902.102.858 (3)142
N2—H2B⋯O5v 0.902.282.916 (3)127

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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7.  Synthesis and evaluation of in vitro anti-microbial and anti-tubercular activity of 2-styryl benzimidazoles.

Authors:  Ramya V Shingalapur; Kallappa M Hosamani; Rangappa S Keri
Journal:  Eur J Med Chem       Date:  2009-05-28       Impact factor: 6.514

8.  Poly[bis-(piperazine-1,4-diium) [(μ4-cyclo-hexa-phosphato)dilithium] tetra-hydrate].

Authors:  Iness Ameur; Sonia Abid; Salem S Al-Deyab; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-11

9.  1-Phenyl-piperazine-1,4-diium bis-(hydrogen sulfate).

Authors:  Houda Marouani; Mohamed Rzaigui; Salem S Al-Deyab
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

10.  The one-dimensional coordination polymer poly[tetra-kis-[(4-chloro-phen-yl)methanaminium] [cadmate-μ-cyclo-hexa-phospho-rato]].

Authors:  Sonia Abid; S Salem Al-Deyab; Mohamed Rzaigui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  10 in total

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