Literature DB >> 22215733

Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway.

Kosuke Takeda1, Danying Shao, Micha Adler, Pascale G Charest, William F Loomis, Herbert Levine, Alex Groisman, Wouter-Jan Rappel, Richard A Firtel.   

Abstract

Adaptation in signaling systems, during which the output returns to a fixed baseline after a change in the input, often involves negative feedback loops and plays a crucial role in eukaryotic chemotaxis. We determined the dynamical response to a uniform change in chemoattractant concentration of a eukaryotic chemotaxis pathway immediately downstream from G protein-coupled receptors. The response of an activated Ras showed near-perfect adaptation, leading us to attempt to fit the results using mathematical models for the two possible simple network topologies that can provide perfect adaptation. Only the incoherent feedforward network accurately described the experimental results. This analysis revealed that adaptation in this Ras pathway is achieved through the proportional activation of upstream components and not through negative feedback loops. Furthermore, these results are consistent with a local excitation, global inhibition mechanism for gradient sensing, possibly with a Ras guanosine triphosphatase-activating protein acting as a global inhibitor.

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Year:  2012        PMID: 22215733      PMCID: PMC3928814          DOI: 10.1126/scisignal.2002413

Source DB:  PubMed          Journal:  Sci Signal        ISSN: 1945-0877            Impact factor:   8.192


  39 in total

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Journal:  Science       Date:  1999-04-30       Impact factor: 47.728

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Authors:  C A Parent; B J Blacklock; W M Froehlich; D B Murphy; P N Devreotes
Journal:  Cell       Date:  1998-10-02       Impact factor: 41.582

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Authors:  N Barkai; S Leibler
Journal:  Nature       Date:  1997-06-26       Impact factor: 49.962

4.  Chemoattractant-mediated transient activation and membrane localization of Akt/PKB is required for efficient chemotaxis to cAMP in Dictyostelium.

Authors:  R Meili; C Ellsworth; S Lee; T B Reddy; H Ma; R A Firtel
Journal:  EMBO J       Date:  1999-04-15       Impact factor: 11.598

5.  Calcium homeostasis and parturient hypocalcemia: an integral feedback perspective.

Authors:  H El-Samad; J P Goff; M Khammash
Journal:  J Theor Biol       Date:  2002-01-07       Impact factor: 2.691

6.  Quantitative imaging of single live cells reveals spatiotemporal dynamics of multistep signaling events of chemoattractant gradient sensing in Dictyostelium.

Authors:  Xuehua Xu; Martin Meier-Schellersheim; Xuanmao Jiao; Lauren E Nelson; Tian Jin
Journal:  Mol Biol Cell       Date:  2004-11-24       Impact factor: 4.138

7.  Demonstration of receptor heterogeneity and affinity modulation by nonequilibrium binding experiments. The cell surface cAMP receptor of Dictyostelium discoideum.

Authors:  P J Van Haastert; R J De Wit
Journal:  J Biol Chem       Date:  1984-11-10       Impact factor: 5.157

8.  Localized Ras signaling at the leading edge regulates PI3K, cell polarity, and directional cell movement.

Authors:  Atsuo T Sasaki; Cheryl Chun; Kosuke Takeda; Richard A Firtel
Journal:  J Cell Biol       Date:  2004-11-08       Impact factor: 10.539

9.  Sensory adaptation of leukocytes to chemotactic peptides.

Authors:  S H Zigmond; S J Sullivan
Journal:  J Cell Biol       Date:  1979-08       Impact factor: 10.539

10.  Excitation, adaptation, and deadaptation of the cAMP-mediated cGMP response in Dictyostelium discoideum.

Authors:  P J Van Haastert; P R Van der Heijden
Journal:  J Cell Biol       Date:  1983-02       Impact factor: 10.539

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  82 in total

1.  Adaptation in a eukaryotic pathway: combining experiments with modeling.

Authors:  Wouter-Jan Rappel; Richard A Firtel
Journal:  Cell Cycle       Date:  2012-03-15       Impact factor: 4.534

2.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

3.  Cell-cell communication during collective migration.

Authors:  Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-22       Impact factor: 11.205

Review 4.  Genetic control of morphogenesis in Dictyostelium.

Authors:  William F Loomis
Journal:  Dev Biol       Date:  2015-04-11       Impact factor: 3.582

5.  Linear conversion of pressure into concentration, rapid switching of concentration, and generation of linear ramps of concentration in a microfluidic device.

Authors:  Micha Adler; Alex Groisman
Journal:  Biomicrofluidics       Date:  2012-04-13       Impact factor: 2.800

6.  The cost of sensitive response and accurate adaptation in networks with an incoherent type-1 feed-forward loop.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

7.  Actin dynamics rapidly reset chemoattractant receptor sensitivity following adaptation in neutrophils.

Authors:  Sheel N Dandekar; Jason S Park; Grace E Peng; James J Onuffer; Wendell A Lim; Orion D Weiner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

Review 8.  Adaptive molecular networks controlling chemotactic migration: dynamic inputs and selection of the network architecture.

Authors:  Hao Chang; Andre Levchenko
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-09-23       Impact factor: 6.237

9.  Decisions on the fly in cellular sensory systems.

Authors:  Eric D Siggia; Massimo Vergassola
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

10.  Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation.

Authors:  Lingxia Qiao; Wei Zhao; Chao Tang; Qing Nie; Lei Zhang
Journal:  Cell Syst       Date:  2019-09-18       Impact factor: 10.304

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