Literature DB >> 22207741

Complete genome sequence of the rice pathogen Pantoea ananatis strain PA13.

Okhee Choi1, Jae Yun Lim, Young-Su Seo, Ingyu Hwang, Jinwoo Kim.   

Abstract

Pantoea ananatis is the causative agent of sheath and grain rot in rice. Here, we present the complete genome sequence of P. ananatis strain PA13, originally isolated from a diseased rice grain.

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Mesh:

Year:  2012        PMID: 22207741      PMCID: PMC3256675          DOI: 10.1128/JB.06450-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  8 in total

1.  Artemis: sequence visualization and annotation.

Authors:  K Rutherford; J Parkhill; J Crook; T Horsnell; P Rice; M A Rajandream; B Barrell
Journal:  Bioinformatics       Date:  2000-10       Impact factor: 6.937

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Phenotypic and genetic diversity of rice seed-associated bacteria and their role in pathogenicity and biological control.

Authors:  B Cottyn; J Debode; E Regalado; T W Mew; J Swings
Journal:  J Appl Microbiol       Date:  2009-03-26       Impact factor: 3.772

4.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  GeneMark.hmm: new solutions for gene finding.

Authors:  A V Lukashin; M Borodovsky
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

7.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

8.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

  8 in total
  15 in total

Review 1.  Detection of AI-2 receptors in genomes of Enterobacteriaceae suggests a role of type-2 quorum sensing in closed ecosystems.

Authors:  Fabio Rezzonico; Theo H M Smits; Brion Duffy
Journal:  Sensors (Basel)       Date:  2012-05-21       Impact factor: 3.576

2.  Negatively Regulated Aerobactin and Desferrioxamine E by Fur in Pantoea ananatis Are Required for Full Siderophore Production and Antibacterial Activity, but Not for Virulence.

Authors:  Okhee Choi; Jaeyeong Cho; Byeongsam Kang; Yeyeong Lee; Jinwoo Kim
Journal:  Appl Environ Microbiol       Date:  2022-02-02       Impact factor: 5.005

3.  Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis.

Authors:  Pieter De Maayer; Wai-Yin Chan; Douglas A J Martin; Jochen Blom; Stephanus N Venter; Brion Duffy; Don A Cowan; Theo H M Smits; Teresa A Coutinho
Journal:  Front Microbiol       Date:  2015-06-08       Impact factor: 5.640

4.  Whole-genome comparative analysis of virulence genes unveils similarities and differences between endophytes and other symbiotic bacteria.

Authors:  Sebastiàn Lòpez-Fernàndez; Paolo Sonego; Marco Moretto; Michael Pancher; Kristof Engelen; Ilaria Pertot; Andrea Campisano
Journal:  Front Microbiol       Date:  2015-05-26       Impact factor: 5.640

5.  The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements.

Authors:  Raheleh Sheibani-Tezerji; Muhammad Naveed; Marc-André Jehl; Angela Sessitsch; Thomas Rattei; Birgit Mitter
Journal:  Front Microbiol       Date:  2015-05-12       Impact factor: 5.640

6.  Draft Genome Sequence of the Antibiotic-Producing Epiphytic Isolate Pantoea ananatis BRT175.

Authors:  Derek D N Smith; Morgan W B Kirzinger; John Stavrinides
Journal:  Genome Announc       Date:  2013-11-07

7.  Characterization of leaf blade- and leaf sheath-associated bacterial communities and assessment of their responses to environmental changes in CO₂, temperature, and nitrogen levels under field conditions.

Authors:  Seishi Ikeda; Takeshi Tokida; Hirofumi Nakamura; Hidemitsu Sakai; Yasuhiro Usui; Takashi Okubo; Kanako Tago; Kentaro Hayashi; Yasuyo Sekiyama; Hiroshi Ono; Satoru Tomita; Masahito Hayatsu; Toshihiro Hasegawa; Kiwamu Minamisawa
Journal:  Microbes Environ       Date:  2015-02-04       Impact factor: 2.912

8.  The large universal Pantoea plasmid LPP-1 plays a major role in biological and ecological diversification.

Authors:  Pieter De Maayer; Wai-Yin Chan; Jochen Blom; Stephanus N Venter; Brion Duffy; Theo H M Smits; Teresa A Coutinho
Journal:  BMC Genomics       Date:  2012-11-15       Impact factor: 3.969

9.  Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts.

Authors:  Pieter De Maayer; Wai Yin Chan; Enrico Rubagotti; Stephanus N Venter; Ian K Toth; Paul R J Birch; Teresa A Coutinho
Journal:  BMC Genomics       Date:  2014-05-27       Impact factor: 3.969

10.  Draft Genome Sequence of Pantoea ananatis GB1, a Plant-Growth-Promoting Hydrocarbonoclastic Root Endophyte, Isolated at a Diesel Fuel Phytoremediation Site Planted with Populus.

Authors:  Panagiotis Gkorezis; Jonathan D Van Hamme; Eric M Bottos; Sofie Thijs; Maria Balseiro-Romero; Carmela Monterroso; Petra Suzan Kidd; Francois Rineau; Nele Weyens; Jaco Vangronsveld
Journal:  Genome Announc       Date:  2016-02-25
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