Literature DB >> 22259498

Methyl 2-{[2-(4,4,5,5-tetra-methyl-1,3-dioxyl-4,5-dihydro-imidazol-2-yl)phen-yl]-oxy}acetate.

Hai-Bo Wang, Lin-Lin Jing, Xiao-Li Sun.   

Abstract

In the title compound, C(16)H(21)N(2)O(5), the benzene ring is nearly perpendicular to the imidazole ring, making a torsion angle of 88.6 (8)°·The crystal structure is stabilized by non-classical C-H⋯O and C-H⋯π inter-actions, which build up a three-dimensional network.

Entities:  

Year:  2011        PMID: 22259498      PMCID: PMC3254550          DOI: 10.1107/S1600536811054018

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemical and physical properties of nitronyl nitroxides, see: Osiecki & Ullman (1968 ▶). For their biological activity, see: Soule et al. (2007 ▶). For related structures, see: Wang et al. (2009 ▶); Jing et al. (2011 ▶).

Experimental

Crystal data

C16H21N2O5 M = 321.35 Monoclinic, a = 11.421 (6) Å b = 7.381 (4) Å c = 19.700 (11) Å β = 91.832 (6)° V = 1659.8 (16) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.23 × 0.21 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.978, T max = 0.987 11481 measured reflections 3082 independent reflections 1717 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.219 S = 0.95 3082 reflections 213 parameters 30 restraints H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811054018/hg5154sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811054018/hg5154Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H21N2O5F(000) = 684
Mr = 321.35Dx = 1.286 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1441 reflections
a = 11.421 (6) Åθ = 2.7–20.5°
b = 7.381 (4) ŵ = 0.10 mm1
c = 19.700 (11) ÅT = 296 K
β = 91.832 (6)°Block, red
V = 1659.8 (16) Å30.23 × 0.21 × 0.14 mm
Z = 4
Bruker APEXII CCD diffractometer3082 independent reflections
Radiation source: fine-focus sealed tube1717 reflections with I > 2σ(I)
graphiteRint = 0.049
φ and ω scansθmax = 25.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −13→13
Tmin = 0.978, Tmax = 0.987k = −8→8
11481 measured reflectionsl = −23→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.219H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.140P)2] where P = (Fo2 + 2Fc2)/3
3082 reflections(Δ/σ)max < 0.001
213 parametersΔρmax = 0.42 e Å3
30 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2619 (4)1.4589 (6)−0.1296 (2)0.0838 (13)
H1A0.22191.3511−0.14470.126*
H1B0.29991.5138−0.16730.126*
H1C0.20651.5424−0.11170.126*
C20.3169 (3)1.2963 (5)−0.03053 (17)0.0527 (9)
C30.4199 (3)1.2593 (4)0.01652 (17)0.0524 (9)
H3A0.48691.2222−0.00920.063*
H3B0.44091.36780.04190.063*
C40.4695 (3)1.0655 (4)0.10896 (18)0.0509 (9)
C50.5846 (3)1.1206 (5)0.1134 (2)0.0616 (10)
H50.61301.20360.08250.074*
C60.6575 (3)1.0515 (5)0.1642 (2)0.0705 (11)
H60.73531.08870.16700.085*
C70.6184 (3)0.9304 (5)0.2103 (2)0.0749 (12)
H70.66840.88650.24460.090*
C80.5027 (3)0.8732 (5)0.2053 (2)0.0667 (11)
H80.47530.78930.23620.080*
C90.4280 (3)0.9395 (4)0.15493 (18)0.0505 (9)
C100.3067 (3)0.8761 (4)0.14568 (16)0.0461 (8)
C110.1010 (3)0.8621 (4)0.14948 (16)0.0476 (8)
C120.1454 (3)0.7110 (4)0.10154 (17)0.0505 (9)
C130.0269 (4)1.0061 (6)0.1154 (2)0.0898 (14)
H13A0.00681.09630.14820.135*
H13B−0.04340.95230.09650.135*
H13C0.06991.06160.07980.135*
C140.0445 (5)0.7921 (6)0.2134 (2)0.1018 (17)
H14A0.09160.69660.23300.153*
H14B−0.03240.74650.20200.153*
H14C0.03850.88910.24560.153*
C150.1063 (6)0.7353 (9)0.0277 (2)0.124 (2)
H15A0.12670.85470.01290.186*
H15B0.02300.71950.02330.186*
H15C0.14450.64700.00030.186*
C160.1231 (4)0.5185 (5)0.1239 (3)0.0999 (17)
H16A0.16440.43630.09540.150*
H16B0.04070.49340.12030.150*
H16C0.15010.50350.17020.150*
N10.2724 (2)0.7420 (4)0.10481 (18)0.0709 (10)
N20.2136 (2)0.9510 (4)0.17210 (14)0.0554 (8)
O10.3482 (2)1.4130 (3)−0.07761 (13)0.0671 (8)
O20.2212 (2)1.2324 (4)−0.02691 (14)0.0769 (9)
O30.38813 (19)1.1206 (3)0.06102 (13)0.0623 (7)
O40.3397 (3)0.6491 (5)0.0681 (2)0.1186 (12)
O50.2140 (2)1.0877 (5)0.21176 (16)0.1025 (12)
U11U22U33U12U13U23
C10.102 (3)0.079 (3)0.069 (3)−0.011 (2)−0.021 (2)0.010 (2)
C20.053 (2)0.052 (2)0.053 (2)−0.0063 (16)0.0076 (16)−0.0013 (17)
C30.0467 (18)0.049 (2)0.061 (2)−0.0090 (15)0.0073 (16)0.0017 (17)
C40.0395 (17)0.053 (2)0.060 (2)−0.0063 (15)0.0010 (16)0.0017 (17)
C50.046 (2)0.058 (2)0.080 (3)−0.0111 (16)0.0016 (18)0.002 (2)
C60.046 (2)0.063 (3)0.101 (3)−0.0059 (18)−0.011 (2)−0.003 (2)
C70.062 (2)0.062 (2)0.100 (3)0.0017 (19)−0.022 (2)0.007 (2)
C80.067 (2)0.058 (2)0.075 (3)−0.0052 (18)−0.008 (2)0.013 (2)
C90.0442 (17)0.049 (2)0.058 (2)−0.0058 (15)0.0019 (16)−0.0013 (17)
C100.0486 (18)0.0436 (19)0.0463 (19)−0.0044 (15)0.0057 (15)0.0049 (16)
C110.0458 (17)0.0477 (19)0.0496 (19)−0.0064 (14)0.0043 (14)0.0001 (16)
C120.0446 (17)0.054 (2)0.053 (2)−0.0072 (15)0.0036 (15)−0.0041 (17)
C130.084 (3)0.071 (3)0.112 (3)0.021 (2)−0.037 (3)−0.017 (3)
C140.135 (4)0.087 (3)0.087 (3)−0.029 (3)0.064 (3)−0.011 (3)
C150.146 (5)0.161 (5)0.065 (3)0.050 (4)−0.009 (3)−0.027 (3)
C160.094 (3)0.054 (3)0.155 (5)−0.019 (2)0.056 (3)−0.017 (3)
N10.0510 (16)0.0576 (18)0.106 (2)−0.0131 (14)0.0310 (16)−0.0363 (17)
N20.0490 (16)0.0664 (19)0.0506 (17)−0.0029 (14)0.0012 (13)−0.0165 (15)
O10.0691 (16)0.0705 (17)0.0612 (16)−0.0152 (13)−0.0052 (13)0.0127 (13)
O20.0480 (15)0.094 (2)0.089 (2)−0.0201 (14)−0.0036 (13)0.0184 (16)
O30.0472 (13)0.0689 (17)0.0704 (16)−0.0189 (11)−0.0041 (11)0.0219 (13)
O40.0707 (18)0.099 (2)0.189 (3)−0.0214 (15)0.0467 (19)−0.074 (2)
O50.076 (2)0.124 (3)0.107 (2)−0.0052 (17)−0.0016 (17)−0.075 (2)
C1—O11.439 (5)C10—N11.328 (4)
C1—H1A0.9600C11—N21.498 (4)
C1—H1B0.9600C11—C131.503 (5)
C1—H1C0.9600C11—C141.524 (5)
C2—O21.194 (4)C11—C121.557 (4)
C2—O11.324 (4)C12—N11.468 (4)
C2—C31.500 (5)C12—C161.512 (5)
C3—O31.403 (4)C12—C151.518 (6)
C3—H3A0.9700C13—H13A0.9600
C3—H3B0.9700C13—H13B0.9600
C4—O31.365 (4)C13—H13C0.9600
C4—C51.376 (4)C14—H14A0.9600
C4—C91.392 (5)C14—H14B0.9600
C5—C61.378 (5)C14—H14C0.9600
C5—H50.9300C15—H15A0.9600
C6—C71.360 (5)C15—H15B0.9600
C6—H60.9300C15—H15C0.9600
C7—C81.388 (5)C16—H16A0.9600
C7—H70.9300C16—H16B0.9600
C8—C91.377 (5)C16—H16C0.9600
C8—H80.9300N1—O41.272 (4)
C9—C101.468 (4)N2—O51.276 (4)
C10—N21.320 (4)
O1—C1—H1A109.5C13—C11—C12115.2 (3)
O1—C1—H1B109.5C14—C11—C12114.4 (3)
H1A—C1—H1B109.5N1—C12—C16108.0 (3)
O1—C1—H1C109.5N1—C12—C15106.5 (3)
H1A—C1—H1C109.5C16—C12—C15110.1 (4)
H1B—C1—H1C109.5N1—C12—C11101.7 (2)
O2—C2—O1124.6 (3)C16—C12—C11115.8 (3)
O2—C2—C3126.3 (3)C15—C12—C11113.9 (3)
O1—C2—C3109.1 (3)C11—C13—H13A109.5
O3—C3—C2107.8 (3)C11—C13—H13B109.5
O3—C3—H3A110.2H13A—C13—H13B109.5
C2—C3—H3A110.2C11—C13—H13C109.5
O3—C3—H3B110.2H13A—C13—H13C109.5
C2—C3—H3B110.2H13B—C13—H13C109.5
H3A—C3—H3B108.5C11—C14—H14A109.5
O3—C4—C5125.7 (3)C11—C14—H14B109.5
O3—C4—C9114.3 (3)H14A—C14—H14B109.5
C5—C4—C9120.0 (3)C11—C14—H14C109.5
C4—C5—C6119.4 (4)H14A—C14—H14C109.5
C4—C5—H5120.3H14B—C14—H14C109.5
C6—C5—H5120.3C12—C15—H15A109.5
C7—C6—C5121.6 (3)C12—C15—H15B109.5
C7—C6—H6119.2H15A—C15—H15B109.5
C5—C6—H6119.2C12—C15—H15C109.5
C6—C7—C8119.0 (4)H15A—C15—H15C109.5
C6—C7—H7120.5H15B—C15—H15C109.5
C8—C7—H7120.5C12—C16—H16A109.5
C9—C8—C7120.6 (4)C12—C16—H16B109.5
C9—C8—H8119.7H16A—C16—H16B109.5
C7—C8—H8119.7C12—C16—H16C109.5
C8—C9—C4119.4 (3)H16A—C16—H16C109.5
C8—C9—C10122.4 (3)H16B—C16—H16C109.5
C4—C9—C10118.1 (3)O4—N1—C10125.1 (3)
N2—C10—N1109.0 (3)O4—N1—C12120.3 (3)
N2—C10—C9125.9 (3)C10—N1—C12114.5 (3)
N1—C10—C9124.9 (3)O5—N2—C10125.8 (3)
N2—C11—C13106.8 (3)O5—N2—C11121.0 (3)
N2—C11—C14106.5 (3)C10—N2—C11113.2 (3)
C13—C11—C14111.2 (3)C2—O1—C1117.2 (3)
N2—C11—C12101.6 (2)C4—O3—C3117.7 (2)
O2—C2—C3—O36.6 (5)N2—C10—N1—O4175.5 (4)
O1—C2—C3—O3−173.5 (3)C9—C10—N1—O40.3 (6)
O3—C4—C5—C6−179.1 (3)N2—C10—N1—C12−1.5 (4)
C9—C4—C5—C6−0.8 (5)C9—C10—N1—C12−176.7 (3)
C4—C5—C6—C7−0.2 (6)C16—C12—N1—O461.9 (5)
C5—C6—C7—C81.0 (6)C15—C12—N1—O4−56.3 (5)
C6—C7—C8—C9−0.7 (6)C11—C12—N1—O4−175.8 (4)
C7—C8—C9—C4−0.3 (6)C16—C12—N1—C10−121.0 (4)
C7—C8—C9—C10176.9 (3)C15—C12—N1—C10120.8 (4)
O3—C4—C9—C8179.5 (3)C11—C12—N1—C101.4 (4)
C5—C4—C9—C81.1 (5)N1—C10—N2—O5−177.4 (3)
O3—C4—C9—C102.2 (5)C9—C10—N2—O5−2.3 (6)
C5—C4—C9—C10−176.2 (3)N1—C10—N2—C111.0 (4)
C8—C9—C10—N293.2 (5)C9—C10—N2—C11176.1 (3)
C4—C9—C10—N2−89.6 (4)C13—C11—N2—O557.3 (4)
C8—C9—C10—N1−92.4 (5)C14—C11—N2—O5−61.6 (4)
C4—C9—C10—N184.8 (4)C12—C11—N2—O5178.3 (3)
N2—C11—C12—N1−0.7 (3)C13—C11—N2—C10−121.2 (3)
C13—C11—C12—N1114.3 (3)C14—C11—N2—C10119.9 (3)
C14—C11—C12—N1−115.0 (4)C12—C11—N2—C10−0.1 (3)
N2—C11—C12—C16116.1 (3)O2—C2—O1—C1−3.0 (5)
C13—C11—C12—C16−128.9 (4)C3—C2—O1—C1177.1 (3)
C14—C11—C12—C161.7 (5)C5—C4—O3—C3−7.2 (5)
N2—C11—C12—C15−114.8 (4)C9—C4—O3—C3174.5 (3)
C13—C11—C12—C150.2 (5)C2—C3—O3—C4−179.6 (3)
C14—C11—C12—C15130.9 (4)
Cg2 is the centroid of the phenyl ring.
D—H···AD—HH···AD···AD—H···A
C3—H3A···O4i0.972.513.327 (5)141
C3—H3B···O4ii0.972.443.195 (5)134
C8—H8···Cg2iii0.932.993.896 (5)164
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O4i0.972.513.327 (5)141
C3—H3B⋯O4ii0.972.443.195 (5)134
C8—H8⋯Cg2iii0.932.993.896 (5)164

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4,4,5,5-Tetra-methyl-2-(3,4,5-trimethoxy-phen-yl)imidazolidine-1-oxyl 3-oxide.

Authors:  Hai-Bo Wang; Lin-Lin Jing; Peng Gao; Xiao-Li Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

Review 3.  The chemistry and biology of nitroxide compounds.

Authors:  Benjamin P Soule; Fuminori Hyodo; Ken-Ichiro Matsumoto; Nicole L Simone; John A Cook; Murali C Krishna; James B Mitchell
Journal:  Free Radic Biol Med       Date:  2007-03-12       Impact factor: 7.376

4.  2-[2-(2-Hy-droxy-eth-oxy)phen-yl]-4,4,5,5-tetra-methyl-2-imidazoline-1-oxyl 3-oxide.

Authors:  Lin-Lin Jing; Hui-Ping Ma; Lei He; Peng-Cheng Fan; Zheng-Ping Jia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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