Literature DB >> 22199955

2-Bromo-4-tert-butyl-6-[(pyridin-2-yl-imino)-meth-yl]phenol.

V Balasubramani, T Vinuchakkaravarthy, Sreeraj Gopi, S Narasimhan, D Velmurugan.   

Abstract

In the title compound, C(16)H(17)BrN(2)O, the pyridine and benzene rings are almost coplanar [dihedral angle = 1.3 (2)°]. An intra-molecular O-H⋯Br inter-action forms an S(5) ring motif.

Entities:  

Year:  2011        PMID: 22199955      PMCID: PMC3239107          DOI: 10.1107/S1600536811050148

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-bacterial and anti-tumor activity of substituted salicyl­aldehyde derivatives, see: Jesmin et al. (2010 ▶); Pelttari et al. (2007 ▶) and for the biological activity of 2-amino­pryidine derivatives, see: Hagmann et al. (2000 ▶). For related structures, see: Puthilibai et al. (2008 ▶); Phurat et al. (2010 ▶); Wang et al.(2010 ▶). For the synthesis, see: Pannerselvam et al. (2005 ▶).

Experimental

Crystal data

C16H17BrN2O M = 333.23 Monoclinic, a = 10.0241 (11) Å b = 16.1355 (16) Å c = 9.4308 (13) Å β = 92.050 (6)° V = 1524.4 (3) Å3 Z = 4 Mo Kα radiation μ = 2.69 mm−1 T = 293 K 0.2 × 0.2 × 0.2 mm

Data collection

Bruker SMART APEXII area-detector diffractometer 6913 measured reflections 3051 independent reflections 2564 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.081 S = 0.98 3051 reflections 184 parameters 2 restraints H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.37 e Å−3 Absolute structure: Flack (1983 ▶), 1147 Friedel pairs Flack parameter: 0.009 (9) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811050148/im2341sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811050148/im2341Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811050148/im2341Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17BrN2OF(000) = 680
Mr = 333.23Dx = 1.452 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 3053 reflections
a = 10.0241 (11) Åθ = 2.4–28.3°
b = 16.1355 (16) ŵ = 2.69 mm1
c = 9.4308 (13) ÅT = 293 K
β = 92.050 (6)°Block, red
V = 1524.4 (3) Å30.2 × 0.2 × 0.2 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer2564 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.035
graphiteθmax = 28.3°, θmin = 2.4°
ω and φ scansh = −13→13
6913 measured reflectionsk = −21→21
3051 independent reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.081w = 1/[σ2(Fo2) + (0.0327P)2] where P = (Fo2 + 2Fc2)/3
S = 0.98(Δ/σ)max = 0.001
3051 reflectionsΔρmax = 0.50 e Å3
184 parametersΔρmin = −0.37 e Å3
2 restraintsAbsolute structure: Flack (1983), 1147 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.009 (9)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5566 (3)0.96379 (15)0.4642 (4)0.0358 (6)
C20.6217 (3)1.03392 (15)0.5239 (3)0.0349 (6)
C30.5803 (3)1.11292 (14)0.4782 (4)0.0391 (7)
H30.62331.15890.51780.047*
C40.4795 (3)1.12589 (15)0.3781 (4)0.0361 (6)
C50.4150 (3)1.05601 (17)0.3224 (4)0.0379 (7)
H50.34541.06230.25540.045*
C60.4536 (3)0.97694 (16)0.3657 (4)0.0388 (7)
C70.7280 (3)1.02509 (19)0.6298 (4)0.0421 (8)
H70.76761.07250.66840.051*
C80.8724 (4)0.94730 (17)0.7759 (5)0.0423 (7)
C90.9091 (3)0.8682 (2)0.8210 (5)0.0531 (9)
H90.86530.82190.78370.064*
C101.0103 (4)0.8595 (3)0.9207 (5)0.0653 (11)
H101.03670.80690.95100.078*
C111.0721 (4)0.9279 (3)0.9754 (5)0.0698 (11)
H111.14010.92351.04470.084*
C121.0307 (4)1.0042 (3)0.9248 (5)0.0695 (13)
H121.07341.05110.96150.083*
C130.4388 (3)1.2146 (2)0.3348 (4)0.0436 (8)
C140.3815 (4)1.2584 (2)0.4631 (5)0.0662 (10)
H14A0.35691.31400.43750.099*
H14B0.44751.25960.53940.099*
H14C0.30411.22890.49290.099*
C150.5606 (3)1.26226 (17)0.2862 (5)0.0564 (9)
H15A0.59821.23400.20740.085*
H15B0.62591.26560.36290.085*
H15C0.53421.31710.25760.085*
C160.3336 (4)1.2144 (3)0.2134 (6)0.0654 (12)
H16A0.37031.18960.13090.098*
H16B0.30711.27040.19210.098*
H16C0.25731.18320.24100.098*
Br10.36263 (5)0.884372 (16)0.28725 (6)0.06324 (14)
N10.7694 (2)0.95411 (16)0.6724 (3)0.0412 (6)
N20.9331 (3)1.01500 (19)0.8263 (4)0.0573 (8)
O10.5940 (2)0.88708 (9)0.5015 (3)0.0519 (7)
H10.54620.85330.45920.078*
U11U22U33U12U13U23
C10.0336 (12)0.0318 (11)0.0417 (18)0.0008 (10)−0.0011 (12)0.0018 (12)
C20.0341 (12)0.0318 (11)0.0383 (18)0.0021 (10)−0.0067 (12)0.0026 (12)
C30.0421 (14)0.0292 (12)0.0452 (19)0.0002 (10)−0.0085 (14)−0.0002 (12)
C40.0337 (12)0.0357 (13)0.0387 (18)0.0014 (10)−0.0023 (13)0.0025 (13)
C50.0330 (13)0.0400 (14)0.0401 (18)−0.0020 (10)−0.0077 (12)0.0009 (13)
C60.0383 (14)0.0352 (12)0.0428 (19)−0.0049 (11)0.0003 (13)−0.0021 (13)
C70.0447 (16)0.0343 (13)0.047 (2)0.0019 (11)−0.0068 (15)−0.0023 (14)
C80.0405 (15)0.0473 (13)0.0388 (19)0.0049 (15)−0.0022 (13)0.0061 (18)
C90.0532 (19)0.0542 (18)0.052 (2)0.0096 (13)−0.0039 (16)0.0086 (16)
C100.060 (2)0.076 (2)0.059 (3)0.0227 (19)−0.003 (2)0.026 (2)
C110.0523 (19)0.101 (3)0.055 (2)0.011 (2)−0.0214 (17)0.015 (2)
C120.060 (2)0.081 (3)0.066 (3)−0.0077 (19)−0.024 (2)0.010 (2)
C130.0484 (17)0.0345 (15)0.047 (2)0.0037 (13)−0.0061 (16)0.0045 (14)
C140.076 (2)0.0498 (18)0.074 (3)0.0211 (16)0.013 (2)0.0060 (18)
C150.067 (2)0.0377 (14)0.064 (3)−0.0013 (13)−0.0035 (18)0.0117 (15)
C160.067 (3)0.051 (2)0.077 (3)0.0112 (17)−0.024 (2)0.011 (2)
Br10.0703 (2)0.04400 (16)0.0735 (3)−0.01579 (16)−0.02473 (16)−0.0033 (2)
N10.0381 (12)0.0418 (13)0.0431 (17)0.0045 (10)−0.0089 (11)0.0036 (11)
N20.0525 (15)0.0573 (16)0.060 (2)−0.0037 (12)−0.0218 (14)0.0070 (15)
O10.0612 (14)0.0255 (9)0.0679 (19)−0.0005 (8)−0.0146 (13)0.0030 (9)
C1—O11.337 (3)C10—C111.359 (7)
C1—C61.380 (4)C10—H100.9300
C1—C21.413 (3)C11—C121.378 (6)
C2—C31.404 (3)C11—H110.9300
C2—C71.441 (5)C12—N21.336 (5)
C3—C41.373 (5)C12—H120.9300
C3—H30.9300C13—C161.529 (5)
C4—C51.393 (4)C13—C151.527 (5)
C4—C131.540 (4)C13—C141.531 (6)
C5—C61.390 (4)C14—H14A0.9600
C5—H50.9300C14—H14B0.9600
C6—Br11.887 (3)C14—H14C0.9600
C7—N11.278 (4)C15—H15A0.9600
C7—H70.9300C15—H15B0.9600
C8—N21.330 (5)C15—H15C0.9600
C8—C91.390 (4)C16—H16A0.9600
C8—N11.399 (5)C16—H16B0.9600
C9—C101.366 (6)C16—H16C0.9600
C9—H90.9300O1—H10.8200
O1—C1—C6121.0 (3)C12—C11—H11121.1
O1—C1—C2121.0 (3)N2—C12—C11124.2 (4)
C6—C1—C2117.9 (2)N2—C12—H12117.9
C3—C2—C1118.5 (3)C11—C12—H12117.9
C3—C2—C7120.4 (3)C16—C13—C15108.3 (3)
C1—C2—C7121.1 (2)C16—C13—C14108.9 (4)
C4—C3—C2123.5 (2)C15—C13—C14109.4 (3)
C4—C3—H3118.3C16—C13—C4111.5 (3)
C2—C3—H3118.3C15—C13—C4110.0 (3)
C3—C4—C5117.1 (2)C14—C13—C4108.8 (3)
C3—C4—C13120.4 (3)C13—C14—H14A109.5
C5—C4—C13122.5 (3)C13—C14—H14B109.5
C6—C5—C4120.8 (3)H14A—C14—H14B109.5
C6—C5—H5119.6C13—C14—H14C109.5
C4—C5—H5119.6H14A—C14—H14C109.5
C1—C6—C5122.2 (3)H14B—C14—H14C109.5
C1—C6—Br1118.8 (2)C13—C15—H15A109.5
C5—C6—Br1119.1 (2)C13—C15—H15B109.5
N1—C7—C2122.0 (3)H15A—C15—H15B109.5
N1—C7—H7119.0C13—C15—H15C109.5
C2—C7—H7119.0H15A—C15—H15C109.5
N2—C8—C9122.1 (4)H15B—C15—H15C109.5
N2—C8—N1120.1 (3)C13—C16—H16A109.5
C9—C8—N1117.8 (3)C13—C16—H16B109.5
C10—C9—C8119.2 (4)H16A—C16—H16B109.5
C10—C9—H9120.4C13—C16—H16C109.5
C8—C9—H9120.4H16A—C16—H16C109.5
C9—C10—C11119.6 (4)H16B—C16—H16C109.5
C9—C10—H10120.2C7—N1—C8120.9 (3)
C11—C10—H10120.2C8—N2—C12117.1 (4)
C10—C11—C12117.8 (4)C1—O1—H1109.5
C10—C11—H11121.1
O1—C1—C2—C3178.5 (3)N2—C8—C9—C100.3 (6)
C6—C1—C2—C3−1.2 (4)N1—C8—C9—C10179.3 (3)
O1—C1—C2—C7−1.8 (4)C8—C9—C10—C110.9 (6)
C6—C1—C2—C7178.5 (3)C9—C10—C11—C12−1.2 (6)
C1—C2—C3—C4−0.1 (5)C10—C11—C12—N20.5 (7)
C7—C2—C3—C4−179.8 (3)C3—C4—C13—C16175.1 (4)
C2—C3—C4—C51.1 (5)C5—C4—C13—C16−6.8 (5)
C2—C3—C4—C13179.4 (3)C3—C4—C13—C1555.0 (5)
C3—C4—C5—C6−1.0 (5)C5—C4—C13—C15−126.9 (3)
C13—C4—C5—C6−179.1 (3)C3—C4—C13—C14−64.8 (4)
O1—C1—C6—C5−178.3 (3)C5—C4—C13—C14113.3 (4)
C2—C1—C6—C51.4 (5)C2—C7—N1—C8−179.8 (3)
O1—C1—C6—Br11.6 (4)N2—C8—N1—C7−3.3 (5)
C2—C1—C6—Br1−178.7 (2)C9—C8—N1—C7177.7 (3)
C4—C5—C6—C1−0.3 (5)C9—C8—N2—C12−1.0 (6)
C4—C5—C6—Br1179.8 (2)N1—C8—N2—C12−180.0 (3)
C3—C2—C7—N1−179.1 (3)C11—C12—N2—C80.6 (6)
C1—C2—C7—N11.3 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···Br10.822.463.021 (3)127
C7—H7···N20.932.382.723 (5)102
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯Br10.822.463.021 (3)127
  8 in total

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Authors:  W K Hagmann; C G Caldwell; P Chen; P L Durette; C K Esser; T J Lanza; I E Kopka; R Guthikonda; S K Shah; M MacCoss; R M Chabin; D Fletcher; S K Grant; B G Green; J L Humes; T M Kelly; S Luell; R Meurer; V Moore; S G Pacholok; T Pavia; H R Williams; K K Wong
Journal:  Bioorg Med Chem Lett       Date:  2000-09-04       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of Schiff bases of 4-(4-aminophenyl)-morpholine as potential antimicrobial agents.

Authors:  Perumal Panneerselvam; Rajasree R Nair; Gudaparthi Vijayalakshmi; Ekambaram Harihara Subramanian; Seshaiah Krishnan Sridhar
Journal:  Eur J Med Chem       Date:  2005-02       Impact factor: 6.514

4.  2-Bromo-4-chloro-6-(4-fluoro-phenyl-imino-meth-yl)phenol.

Authors:  G Puthilibai; S Vasudhevan; G Rajagopal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-25

5.  Antimicrobial properties of substituted salicylaldehydes and related compounds.

Authors:  Eila Pelttari; Eliisa Karhumäki; Jane Langshaw; Hannu Peräkylä; Hannu Elo
Journal:  Z Naturforsch C J Biosci       Date:  2007 Jul-Aug

6.  Salicyl-aldehyde-4-(dimethyl-amino)-pyridine (1/1).

Authors:  Chuttree Phurat; Thapong Teerawatananond; Nongnuj Muangsin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

7.  5-tert-Butyl-2-hy-droxy-3-(2-thien-yl)benzaldehyde.

Authors:  Yanwei Wang; Zhenzhen Qiu; Hongze Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-04

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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