Literature DB >> 22199926

6-Bromo-2-methyl-sulfanyl-1,3-benzo-thia-zole.

Michał A Dobrowolski, Marta Struga, Daniel Szulczyk.   

Abstract

The title mol-ecule, C(8)H(6)BrNS(2), is almost planar with a dihedral angle of 0.9 (1)° between the benzene and thia-zole rings. The values of the geometry-based index of aromaticity (HOMA) and the nucleus-independent chemical shift (NICS) for the two cyclic fragments of the title mol-ecule are 0.95 and -9.61, respectively, for the benzene ring, and 0.69 and -7.71, respectively, for the thia-zole ring. They show that the benzene ring exhibits substanti-ally higher cyclic π-electron delocalization than the thia-zole ring. Comparison with other similar benzothia-zole fragments reveals a similar trend.

Entities:  

Year:  2011        PMID: 22199926      PMCID: PMC3239078          DOI: 10.1107/S160053681105015X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For related structures, see: Chen et al. (2003 ▶, 2010 ▶); Li et al. (2009 ▶); Liu et al. (2003 ▶); Loghmani-Khouzani et al. (2009 ▶); Matthews et al. (1996 ▶); Saravanan et al. (2007 ▶); Zhao et al. (2009 ▶); Zou et al. (2003 ▶). For the aromaticity of benzothia­zoles, see: Karolak-Wojciechowska et al. (2007 ▶). For the Gaussian program, see: Frisch et al. (2009 ▶). For the HOMA index, see: Kruszewski & Krygowski (1972 ▶); Krygowski & Cyrański (2001 ▶) and for the NICS index, see: Schleyer et al. (1996 ▶).

Experimental

Crystal data

C8H6BrNS2 M = 260.18 Monoclinic, a = 9.7843 (4) Å b = 3.9514 (2) Å c = 11.6076 (5) Å β = 96.353 (4)° V = 446.01 (3) Å3 Z = 2 Mo Kα radiation μ = 5.01 mm−1 T = 100 K 0.4 × 0.15 × 0.1 mm

Data collection

Oxford Diffraction Xcalibur S diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.422, T max = 0.606 3437 measured reflections 1227 independent reflections 1125 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.017 wR(F 2) = 0.033 S = 0.99 1227 reflections 110 parameters 1 restraint H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 315 Friedel pairs Flack parameter: 0.005 (9) Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681105015X/gk2424sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681105015X/gk2424Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681105015X/gk2424Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6BrNS2F(000) = 256
Mr = 260.18Dx = 1.937 Mg m3
Monoclinic, P21Melting point = 371–374 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 9.7843 (4) ÅCell parameters from 2764 reflections
b = 3.9514 (2) Åθ = 2.9–28.5°
c = 11.6076 (5) ŵ = 5.01 mm1
β = 96.353 (4)°T = 100 K
V = 446.01 (3) Å3Needle, colourless
Z = 20.4 × 0.15 × 0.1 mm
Oxford Diffraction Xcalibur S diffractometer1227 independent reflections
Radiation source: fine-focus sealed tube1125 reflections with I > 2σ(I)
graphiteRint = 0.024
Detector resolution: 8.6479 pixels mm-1θmax = 25.0°, θmin = 2.9°
phi and ω scansh = −11→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −4→3
Tmin = 0.422, Tmax = 0.606l = −13→13
3437 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.017H-atom parameters constrained
wR(F2) = 0.033w = 1/[σ2(Fo2) + (0.0143P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.002
1227 reflectionsΔρmax = 0.36 e Å3
110 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 315 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.005 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7671 (3)0.6254 (7)0.9919 (3)0.0141 (7)
C20.8559 (3)0.5366 (12)0.9147 (2)0.0123 (6)
C30.8181 (3)0.6157 (7)0.7984 (3)0.0121 (7)
C40.6939 (3)0.7815 (8)0.7626 (3)0.0121 (7)
C50.6060 (3)0.8712 (7)0.8439 (3)0.0137 (7)
C60.6430 (3)0.7938 (8)0.9590 (3)0.0135 (7)
C70.7722 (3)0.7402 (8)0.5934 (3)0.0127 (7)
C80.6257 (3)0.9551 (10)0.3940 (3)0.0192 (8)
N10.6702 (3)0.8486 (6)0.6440 (2)0.0131 (6)
S10.90775 (7)0.5420 (3)0.68048 (6)0.01509 (19)
S20.79094 (8)0.7776 (2)0.44632 (7)0.01761 (19)
Br10.81246 (3)0.50973 (9)1.15124 (2)0.01701 (9)
H20.94030.42540.93900.015*
H50.52180.98410.82050.016*
H60.58450.85461.01580.016*
H8A0.60841.15560.43990.029*
H8B0.55370.78670.40110.029*
H8C0.62541.01960.31240.029*
U11U22U33U12U13U23
C10.0180 (18)0.0130 (17)0.0109 (16)−0.0034 (13)−0.0003 (14)0.0000 (13)
C20.0133 (13)0.0076 (16)0.0157 (14)−0.0013 (16)0.0000 (10)0.0028 (16)
C30.0103 (16)0.0095 (15)0.0169 (16)−0.0012 (12)0.0029 (13)−0.0044 (12)
C40.0120 (17)0.0099 (16)0.0144 (17)−0.0050 (14)0.0012 (13)−0.0032 (14)
C50.0122 (17)0.0110 (15)0.0178 (18)0.0005 (12)0.0013 (13)−0.0010 (13)
C60.0134 (17)0.0123 (16)0.0157 (18)−0.0017 (14)0.0051 (13)−0.0050 (14)
C70.0137 (17)0.0090 (15)0.0150 (17)−0.0048 (14)−0.0001 (14)−0.0006 (14)
C80.0213 (17)0.019 (2)0.0171 (16)−0.0014 (17)−0.0006 (13)0.0025 (17)
N10.0132 (15)0.0136 (13)0.0122 (14)−0.0018 (11)0.0011 (11)0.0012 (11)
S10.0140 (4)0.0166 (5)0.0149 (4)0.0027 (5)0.0027 (3)−0.0012 (5)
S20.0190 (5)0.0197 (4)0.0149 (4)0.0020 (4)0.0049 (3)0.0010 (4)
Br10.02064 (16)0.01663 (14)0.01365 (15)0.0003 (2)0.00146 (11)0.0021 (2)
S1—C31.730 (3)C6—H60.9500
S1—C71.760 (3)C3—C41.402 (4)
N1—C71.286 (4)C4—C51.391 (4)
N1—C41.396 (4)C5—H50.9500
C2—C11.362 (4)C7—S21.744 (3)
C2—C31.395 (4)S2—C81.805 (3)
C2—H20.9500C8—H8A0.9800
C1—C61.400 (4)C8—H8B0.9800
C1—Br11.909 (3)C8—H8C0.9800
C6—C51.379 (4)
C3—S1—C787.90 (14)C5—C4—C3119.9 (3)
C7—N1—C4109.5 (3)N1—C4—C3115.2 (3)
C1—C2—C3117.3 (3)C6—C5—C4119.0 (3)
C1—C2—H2121.3C6—C5—H5120.5
C3—C2—H2121.3C4—C5—H5120.5
C2—C1—C6122.7 (3)N1—C7—S2126.2 (2)
C2—C1—Br1118.6 (2)N1—C7—S1117.4 (2)
C6—C1—Br1118.7 (2)S2—C7—S1116.46 (18)
C5—C6—C1119.8 (3)C7—S2—C8100.09 (15)
C5—C6—H6120.1S2—C8—H8A109.5
C1—C6—H6120.1S2—C8—H8B109.5
C2—C3—C4121.3 (3)H8A—C8—H8B109.5
C2—C3—S1128.6 (2)S2—C8—H8C109.5
C4—C3—S1110.0 (2)H8A—C8—H8C109.5
C5—C4—N1124.9 (3)H8B—C8—H8C109.5
C3—C2—C1—C6−0.9 (5)C2—C3—C4—N1179.2 (3)
C3—C2—C1—Br1178.1 (3)S1—C3—C4—N10.1 (3)
C2—C1—C6—C51.0 (5)C1—C6—C5—C4−0.4 (4)
Br1—C1—C6—C5−178.1 (2)N1—C4—C5—C6−179.0 (3)
C1—C2—C3—C40.3 (5)C3—C4—C5—C6−0.1 (4)
C1—C2—C3—S1179.3 (3)C4—N1—C7—S2−178.1 (2)
C7—S1—C3—C2−178.8 (4)C4—N1—C7—S10.6 (3)
C7—S1—C3—C40.2 (2)C3—S1—C7—N1−0.5 (3)
C7—N1—C4—C5178.5 (3)C3—S1—C7—S2178.36 (19)
C7—N1—C4—C3−0.4 (4)N1—C7—S2—C8−6.0 (3)
C2—C3—C4—C50.2 (5)S1—C7—S2—C8175.2 (2)
S1—C3—C4—C5−178.9 (2)
refcodeR =HOMA (total)HOMA (thiazole)HOMA (benzene)
This workH0.820.690.95
DIDBAUa-C(Ph)=N-NH-C(O)-NH20.850.730.99
HUFSILb-CH2-O-CH2-CH2-S-BT0.830.690.98
HUYYIJc-CH2-CH2-CH2-S-BT0.840.700.98
MACMOTd-CH2-S-BT0.850.720.97
-CH2-S-BT0.850.710.98
MACMOT01e-CH2-S-BT0.850.700.98
-CH2-S-BT0.850.710.97
MOKJIGf-C(O)-C(COOCH3)=N-O-CH30.830.700.96
PUFGEDg-C(O)-Ph0.840.700.96
QOTQASh-C(O)-NH-2-MePyr0.850.710.98
ZUQQEHi-CH2-O-CH2-CH2-O- CH2-CH2-S-BT0.830.670.98
Mean0.840.700.97
E.s.d.0.010.010.01
Table 1

HOMA indices for compounds containing benzothia­zole moieties.

BT = benzothia­zole; MePyr = methyl­pyridine.

refcodeR =HOMA (total)HOMA (thia­zole)HOMA (benzene)
This workH0.820.690.95
DIDBAUa-C(Ph)=N—NH—C(O)—NH20.850.730.99
HUFSILb-CH2—O—CH2—CH2—S—BT0.830.690.98
HUYYIJc-CH2—CH2—CH2—S—BT0.840.700.98
MACMOTd-CH2—S—BT0.850.720.97
 -CH2—S—BT0.850.710.98
MACMOT01e-CH2—S—BT0.850.700.98
 -CH2—S—BT0.850.710.97
MOKJIGf-C(O)—C(COOCH3)=N—O—CH30.830.700.96
PUFGEDg-C(O)—Ph0.840.700.96
QOTQASh-C(O)—NH-2-MePyr0.850.710.98
ZUQQEHi-CH2—O—CH2—CH2—O– CH2—CH2—S—BT0.830.670.98
Mean 0.840.700.97
E.s.d. 0.010.010.01

Notes: (a) Saravanan et al. (2007 ▶); (b) Chen et al. (2010 ▶); (c) Chen et al. (2003 ▶); (d) Liu et al. (2003 ▶); (e) Zou et al. (2003 ▶); (f) Li et al. (2009 ▶); (g) Loghmani-Khouzani et al. (2009 ▶); (h) Matthews et al. (1996 ▶); (i) Zhao et al. (2009 ▶).

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8.  (Z)-Methyl 4-(1,3-benzothia-zol-2-yl-sulfan-yl)-2-(methoxy-imino)-3-oxo-butanoate.

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