Literature DB >> 21584001

2-(Benzo[d]thia-zol-2-ylsulfan-yl)-N-(6-methyl-2-pyrid-yl)acetamide.

Bing Zhao, Hui Wang, Qiang Li, Yan Gao, Dong Liang.   

Abstract

In the title compound, C(15)H(13)N(3)OS(2), the pyridine ring and the benzo[d]thia-zole unit subtend a dihedral angle of 57.7 (2)°. The length of the C(sp) (2)-S bond [1.7462 (17) Å] is significantly shorter than that of the C(sp) (3)-S bond [1.8133 (18) Å]. The crystal structure is stabilized by intra-molecular N-H⋯N and inter-molecular C-H⋯O and C-H⋯N hydrogen-bond inter-actions. Furthermore, C-H⋯π inter-actions stabilize the crystal packing.

Entities:  

Year:  2009        PMID: 21584001      PMCID: PMC2977658          DOI: 10.1107/S1600536809011519

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biologically active compounds containing the acylamide system, see: Bennasar et al. (2006 ▶); Ladziata et al. (2006 ▶). For bond-length data, see: Gao et al. (2007 ▶).

Experimental

Crystal data

C15H13N3OS2 M = 315.40 Triclinic, a = 8.1919 (16) Å b = 9.0818 (18) Å c = 11.107 (2) Å α = 74.78 (3)° β = 89.55 (3)° γ = 69.34 (3)° V = 742.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 113 K 0.16 × 0.14 × 0.10 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.945, T max = 0.965 9391 measured reflections 3526 independent reflections 2615 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.092 S = 0.99 3526 reflections 195 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear (Molecular Structure Corporation & Rigaku, 1999 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809011519/at2753sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011519/at2753Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3OS2Z = 2
Mr = 315.40F(000) = 328
Triclinic, P1Dx = 1.410 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1919 (16) ÅCell parameters from 2582 reflections
b = 9.0818 (18) Åθ = 1.9–27.9°
c = 11.107 (2) ŵ = 0.36 mm1
α = 74.78 (3)°T = 113 K
β = 89.55 (3)°Prism, colourless
γ = 69.34 (3)°0.16 × 0.14 × 0.10 mm
V = 742.8 (3) Å3
Rigaku Saturn diffractometer3526 independent reflections
Radiation source: rotating anode2615 reflections with I > 2σ(I)
confocalRint = 0.048
ω scansθmax = 27.9°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.945, Tmax = 0.965k = −11→11
9391 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0398P)2] where P = (Fo2 + 2Fc2)/3
3526 reflections(Δ/σ)max = 0.001
195 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.08893 (5)1.05001 (5)0.25028 (4)0.02336 (13)
S20.20597 (5)1.15671 (5)0.45732 (4)0.02242 (13)
N10.74042 (17)0.74849 (16)0.19582 (13)0.0200 (3)
N20.45173 (18)0.88209 (17)0.12486 (14)0.0210 (3)
N30.37052 (17)1.13818 (15)0.25715 (13)0.0192 (3)
O10.24938 (15)0.82797 (14)0.02096 (13)0.0320 (3)
C10.6056 (2)0.74785 (18)0.12785 (15)0.0189 (4)
C20.6186 (2)0.62959 (19)0.06672 (16)0.0217 (4)
H20.52030.63320.01960.026*
C30.7803 (2)0.50655 (19)0.07723 (16)0.0233 (4)
H30.79490.42290.03710.028*
C40.9210 (2)0.50511 (19)0.14621 (16)0.0217 (4)
H41.03290.42140.15330.026*
C50.8961 (2)0.62787 (19)0.20491 (16)0.0204 (4)
C61.0426 (2)0.6313 (2)0.28327 (18)0.0300 (4)
H6A1.02810.74520.27610.045*
H6B1.15500.57650.25380.045*
H6C1.04030.57450.37110.045*
C70.2879 (2)0.9140 (2)0.07486 (16)0.0217 (4)
C80.1511 (2)1.06990 (19)0.09143 (16)0.0222 (4)
H8A0.04531.10090.03390.027*
H8B0.19751.15940.06760.027*
C90.2379 (2)1.11504 (18)0.31235 (16)0.0193 (4)
C100.4590 (2)1.19559 (18)0.32980 (15)0.0184 (4)
C110.3900 (2)1.21228 (18)0.44347 (16)0.0194 (4)
C120.4660 (2)1.26537 (19)0.52672 (16)0.0239 (4)
H120.41941.27500.60410.029*
C130.6122 (2)1.3037 (2)0.49261 (17)0.0257 (4)
H130.66671.34050.54760.031*
C140.6811 (2)1.2894 (2)0.37940 (17)0.0255 (4)
H140.78061.31810.35830.031*
C150.6076 (2)1.23436 (19)0.29716 (16)0.0225 (4)
H150.65631.22310.22070.027*
H2A0.463 (2)0.951 (2)0.1624 (17)0.027 (5)*
U11U22U33U12U13U23
S10.0181 (2)0.0224 (2)0.0319 (3)−0.00785 (18)0.00497 (18)−0.0107 (2)
S20.0215 (3)0.0227 (2)0.0215 (2)−0.00602 (18)0.00643 (18)−0.00652 (18)
N10.0180 (7)0.0194 (7)0.0224 (8)−0.0055 (6)0.0019 (6)−0.0072 (6)
N20.0166 (8)0.0207 (7)0.0274 (8)−0.0035 (6)−0.0001 (6)−0.0139 (7)
N30.0175 (8)0.0178 (7)0.0215 (7)−0.0049 (6)0.0015 (6)−0.0062 (6)
O10.0229 (7)0.0330 (7)0.0440 (8)−0.0057 (5)−0.0046 (6)−0.0229 (7)
C10.0186 (9)0.0183 (8)0.0186 (8)−0.0054 (7)0.0036 (7)−0.0052 (7)
C20.0220 (9)0.0220 (8)0.0237 (9)−0.0086 (7)0.0046 (7)−0.0095 (7)
C30.0281 (10)0.0191 (8)0.0246 (9)−0.0088 (7)0.0078 (8)−0.0094 (7)
C40.0206 (9)0.0156 (8)0.0250 (9)−0.0032 (7)0.0070 (7)−0.0042 (7)
C50.0187 (9)0.0191 (8)0.0207 (9)−0.0056 (7)0.0046 (7)−0.0030 (7)
C60.0215 (10)0.0271 (9)0.0374 (11)−0.0034 (8)−0.0007 (8)−0.0097 (9)
C70.0178 (9)0.0236 (8)0.0230 (9)−0.0056 (7)0.0016 (7)−0.0082 (8)
C80.0179 (9)0.0229 (9)0.0252 (9)−0.0046 (7)−0.0016 (7)−0.0096 (8)
C90.0185 (9)0.0137 (7)0.0211 (9)−0.0005 (6)0.0015 (7)−0.0047 (7)
C100.0198 (9)0.0142 (7)0.0188 (8)−0.0036 (6)−0.0017 (7)−0.0041 (7)
C110.0194 (9)0.0147 (8)0.0199 (9)−0.0023 (6)0.0010 (7)−0.0033 (7)
C120.0284 (10)0.0212 (8)0.0178 (9)−0.0029 (7)−0.0002 (7)−0.0068 (7)
C130.0289 (10)0.0201 (8)0.0270 (10)−0.0068 (7)−0.0042 (8)−0.0076 (8)
C140.0255 (10)0.0233 (9)0.0284 (10)−0.0115 (8)−0.0009 (8)−0.0046 (8)
C150.0216 (9)0.0241 (9)0.0208 (9)−0.0081 (7)0.0043 (7)−0.0049 (7)
S1—C91.7462 (17)C4—H40.9500
S1—C81.8133 (18)C5—C61.502 (2)
S2—C111.7444 (17)C6—H6A0.9800
S2—C91.7459 (17)C6—H6B0.9800
N1—C51.340 (2)C6—H6C0.9800
N1—C11.345 (2)C7—C81.519 (2)
N2—C71.359 (2)C8—H8A0.9900
N2—C11.404 (2)C8—H8B0.9900
N2—H2A0.863 (17)C10—C111.402 (2)
N3—C91.297 (2)C10—C151.402 (2)
N3—C101.395 (2)C11—C121.389 (2)
O1—C71.2212 (19)C12—C131.385 (2)
C1—C21.388 (2)C12—H120.9500
C2—C31.381 (2)C13—C141.393 (3)
C2—H20.9500C13—H130.9500
C3—C41.383 (2)C14—C151.381 (2)
C3—H30.9500C14—H140.9500
C4—C51.389 (2)C15—H150.9500
C9—S1—C8100.19 (8)O1—C7—C8121.40 (15)
C11—S2—C988.51 (8)N2—C7—C8113.96 (14)
C5—N1—C1117.98 (13)C7—C8—S1113.25 (12)
C7—N2—C1128.33 (14)C7—C8—H8A108.9
C7—N2—H2A116.3 (12)S1—C8—H8A108.9
C1—N2—H2A115.3 (12)C7—C8—H8B108.9
C9—N3—C10110.02 (14)S1—C8—H8B108.9
N1—C1—C2123.80 (15)H8A—C8—H8B107.7
N1—C1—N2111.89 (13)N3—C9—S2116.86 (12)
C2—C1—N2124.31 (15)N3—C9—S1124.62 (13)
C3—C2—C1117.24 (15)S2—C9—S1118.51 (10)
C3—C2—H2121.4N3—C10—C11115.18 (15)
C1—C2—H2121.4N3—C10—C15124.86 (16)
C2—C3—C4119.97 (15)C11—C10—C15119.96 (15)
C2—C3—H3120.0C12—C11—C10121.74 (16)
C4—C3—H3120.0C12—C11—S2128.85 (14)
C3—C4—C5119.00 (16)C10—C11—S2109.42 (12)
C3—C4—H4120.5C13—C12—C11117.45 (17)
C5—C4—H4120.5C13—C12—H12121.3
N1—C5—C4122.01 (15)C11—C12—H12121.3
N1—C5—C6116.40 (14)C12—C13—C14121.46 (16)
C4—C5—C6121.59 (15)C12—C13—H13119.3
C5—C6—H6A109.5C14—C13—H13119.3
C5—C6—H6B109.5C15—C14—C13121.31 (17)
H6A—C6—H6B109.5C15—C14—H14119.3
C5—C6—H6C109.5C13—C14—H14119.3
H6A—C6—H6C109.5C14—C15—C10118.07 (16)
H6B—C6—H6C109.5C14—C15—H15121.0
O1—C7—N2124.63 (16)C10—C15—H15121.0
C5—N1—C1—C20.0 (3)C11—S2—C9—N30.20 (13)
C5—N1—C1—N2−179.13 (14)C11—S2—C9—S1−178.48 (10)
C7—N2—C1—N1−173.97 (16)C8—S1—C9—N3−10.77 (15)
C7—N2—C1—C26.9 (3)C8—S1—C9—S2167.80 (9)
N1—C1—C2—C3−0.1 (3)C9—N3—C10—C111.10 (19)
N2—C1—C2—C3178.95 (16)C9—N3—C10—C15−179.48 (14)
C1—C2—C3—C4−0.2 (2)N3—C10—C11—C12178.84 (14)
C2—C3—C4—C50.5 (2)C15—C10—C11—C12−0.6 (2)
C1—N1—C5—C40.3 (2)N3—C10—C11—S2−0.95 (17)
C1—N1—C5—C6−179.05 (15)C15—C10—C11—S2179.60 (12)
C3—C4—C5—N1−0.6 (3)C9—S2—C11—C12−179.36 (15)
C3—C4—C5—C6178.74 (16)C9—S2—C11—C100.42 (12)
C1—N2—C7—O1−1.3 (3)C10—C11—C12—C130.8 (2)
C1—N2—C7—C8178.66 (15)S2—C11—C12—C13−179.40 (12)
O1—C7—C8—S1105.85 (18)C11—C12—C13—C14−0.1 (2)
N2—C7—C8—S1−74.11 (17)C12—C13—C14—C15−0.8 (3)
C9—S1—C8—C791.58 (12)C13—C14—C15—C101.1 (2)
C10—N3—C9—S2−0.76 (17)N3—C10—C15—C14−179.76 (14)
C10—N3—C9—S1177.84 (11)C11—C10—C15—C14−0.4 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N30.867 (18)2.142 (18)2.949 (2)154.6 (16)
C2—H2···O10.952.302.890 (2)119
C8—H8A···O1i0.992.313.239 (2)156
C8—H8B···N30.992.472.905 (2)106
C12—H12···N1ii0.952.573.498 (2)166
C8—H8B···Cg2iii0.992.683.494 (2)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N30.867 (18)2.142 (18)2.949 (2)154.6 (16)
C2—H2⋯O10.952.302.890 (2)119
C8—H8A⋯O1i0.992.313.239 (2)156
C8—H8B⋯N30.992.472.905 (2)106
C12—H12⋯N1ii0.952.573.498 (2)166
C8—H8BCg2iii0.992.683.494 (2)140

Symmetry codes: (i) ; (ii) ; (iii) . Cg2 is the centroid of the N1/C1–C5 ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  M Lluïsa Bennasar; Tomàs Roca; Manuel Monerris; Davinia García-Díaz
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Authors:  Uladzimir Ladziata; Jeff Willging; Viktor V Zhdankin
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1.  6-Bromo-2-methyl-sulfanyl-1,3-benzo-thia-zole.

Authors:  Michał A Dobrowolski; Marta Struga; Daniel Szulczyk
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-25

2.  2-(1,3-Benzothiazol-2-ylsulfanyl)-N-(2-methylphenyl)acetamide.

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