Literature DB >> 22199814

Benzyl 2-{[2,8-bis-(trifluoro-meth-yl)quinolin-4-yl](hy-droxy)meth-yl}piperidine-1-carboxyl-ate.

Marcus V N de Souza, Raoni S B Gonçalves, James L Wardell, Solange M S V Wardell, Edward R T Tiekink.   

Abstract

The title mol-ecule, C(25)H(22)F(6)N(2)O(3), adopts an open conformation whereby the quinoline and carboxyl-ate ester groups are orientated in opposite directions but to the same side of the piperidine ring so that the mol-ecule has an approximate U-shape. The piperidine ring adopts a distorted boat conformation. In the crystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R(2) (2)(14) loops.

Entities:  

Year:  2011        PMID: 22199814      PMCID: PMC3238965          DOI: 10.1107/S1600536811047738

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the anti-mycobacterial activity of mefloquine, see: Gonçalves et al. (2010 ▶); Mao et al. (2007 ▶); Maguire et al. (2006 ▶). For the synthesis, see: Grellepois et al. (2005 ▶). For related structures, see: Gonçalves et al. (2011a ▶,b ▶); Wardell et al. (2010 ▶, 2011a ▶,b ▶); Pitaluga et al. (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C25H22F6N2O3 M = 512.45 Monoclinic, a = 12.7793 (5) Å b = 13.9970 (7) Å c = 13.2188 (9) Å β = 109.999 (8)° V = 2221.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 100 K 0.15 × 0.11 × 0.04 mm

Data collection

Rigaku Saturn724+ diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2011 ▶) T min = 0.757, T max = 1.000 10271 measured reflections 5060 independent reflections 4132 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.107 S = 1.00 5060 reflections 328 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2011 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811047738/hb6498sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811047738/hb6498Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811047738/hb6498Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H22F6N2O3F(000) = 1056
Mr = 512.45Dx = 1.532 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8584 reflections
a = 12.7793 (5) Åθ = 3.1–27.5°
b = 13.9970 (7) ŵ = 0.13 mm1
c = 13.2188 (9) ÅT = 100 K
β = 109.999 (8)°Plate, colourless
V = 2221.9 (2) Å30.15 × 0.11 × 0.04 mm
Z = 4
Rigaku Saturn724+ diffractometer5060 independent reflections
Radiation source: Rotating Anode4132 reflections with I > 2σ(I)
ConfocalRint = 0.026
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.1°
profile data from ω–scansh = −15→16
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2011)k = −15→18
Tmin = 0.757, Tmax = 1.000l = −14→17
10271 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0549P)2 + 0.9076P] where P = (Fo2 + 2Fc2)/3
5060 reflections(Δ/σ)max < 0.001
328 parametersΔρmax = 0.34 e Å3
1 restraintΔρmin = −0.32 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.06301 (8)0.63866 (8)0.42728 (8)0.0347 (3)
F20.08200 (10)0.59309 (10)0.27995 (8)0.0472 (3)
F30.00983 (8)0.49890 (9)0.36550 (11)0.0490 (3)
F40.24269 (7)0.32103 (7)0.22775 (7)0.0244 (2)
F50.40411 (8)0.31616 (7)0.21097 (7)0.0268 (2)
F60.32339 (7)0.45128 (7)0.20711 (7)0.0223 (2)
O10.34838 (8)0.58357 (7)0.75929 (8)0.0177 (2)
H1o0.3897 (13)0.6035 (13)0.8197 (10)0.026*
O20.54803 (8)0.32514 (8)0.88013 (8)0.0172 (2)
O30.53313 (8)0.33958 (7)1.04525 (8)0.0167 (2)
N10.24628 (9)0.47056 (9)0.38278 (9)0.0148 (2)
N20.40608 (9)0.40943 (8)0.89798 (9)0.0132 (2)
C10.20188 (11)0.52274 (10)0.44060 (11)0.0157 (3)
C20.24724 (11)0.53657 (10)0.55218 (11)0.0153 (3)
H20.21150.57730.58790.018*
C30.34448 (11)0.49011 (10)0.60906 (11)0.0135 (3)
C40.39716 (11)0.43306 (10)0.55111 (11)0.0131 (3)
C50.49874 (11)0.38293 (10)0.60028 (11)0.0156 (3)
H50.53360.38480.67630.019*
C60.54664 (12)0.33218 (11)0.53960 (12)0.0184 (3)
H60.61490.29970.57370.022*
C70.49589 (12)0.32732 (10)0.42648 (12)0.0178 (3)
H70.53050.29200.38520.021*
C80.39727 (11)0.37307 (10)0.37610 (11)0.0148 (3)
C90.34484 (11)0.42711 (10)0.43713 (11)0.0132 (3)
C100.08955 (13)0.56455 (12)0.37809 (12)0.0234 (3)
C110.34203 (12)0.36577 (11)0.25637 (12)0.0188 (3)
C120.38962 (11)0.49779 (10)0.73029 (11)0.0136 (3)
H120.47280.50040.75530.016*
C130.35295 (11)0.40908 (10)0.77995 (11)0.0130 (3)
H130.37850.35070.75150.016*
C140.33521 (11)0.43906 (11)0.95997 (11)0.0162 (3)
H14A0.30390.50320.93610.019*
H14B0.38050.44271.03740.019*
C150.24059 (12)0.36724 (12)0.94326 (12)0.0207 (3)
H15A0.17860.39810.95980.025*
H15B0.26740.31270.99310.025*
C160.19855 (12)0.33083 (11)0.82632 (12)0.0200 (3)
H16A0.23370.26850.82260.024*
H16B0.11690.32120.80240.024*
C170.22634 (11)0.40230 (10)0.75142 (12)0.0159 (3)
H17A0.19590.46590.75890.019*
H17B0.19160.38140.67570.019*
C180.49755 (11)0.35697 (10)0.94887 (11)0.0132 (3)
C190.63991 (11)0.25860 (11)0.92685 (12)0.0184 (3)
H19A0.65030.21960.86860.022*
H19B0.62030.21480.97640.022*
C200.74791 (12)0.30819 (10)0.98754 (12)0.0171 (3)
C210.80837 (13)0.35436 (11)0.93193 (13)0.0226 (3)
H210.78030.35640.85550.027*
C220.90963 (13)0.39735 (12)0.98804 (15)0.0272 (4)
H220.95060.42850.94980.033*
C230.95114 (13)0.39495 (12)1.09955 (15)0.0285 (4)
H231.02070.42401.13760.034*
C240.89110 (13)0.35018 (11)1.15538 (14)0.0250 (3)
H240.91910.34891.23180.030*
C250.78982 (12)0.30711 (11)1.09960 (12)0.0198 (3)
H250.74870.27661.13830.024*
U11U22U33U12U13U23
F10.0323 (5)0.0394 (6)0.0246 (5)0.0208 (5)−0.0003 (4)−0.0068 (5)
F20.0495 (7)0.0708 (9)0.0172 (5)0.0375 (6)0.0061 (5)0.0128 (5)
F30.0158 (5)0.0440 (7)0.0709 (9)0.0006 (4)−0.0062 (5)−0.0050 (6)
F40.0241 (4)0.0307 (5)0.0174 (5)−0.0109 (4)0.0059 (4)−0.0066 (4)
F50.0312 (5)0.0347 (5)0.0181 (5)0.0039 (4)0.0130 (4)−0.0075 (4)
F60.0283 (5)0.0250 (5)0.0139 (4)−0.0012 (4)0.0079 (4)0.0029 (4)
O10.0231 (5)0.0152 (5)0.0116 (5)0.0010 (4)0.0020 (4)−0.0035 (4)
O20.0150 (5)0.0235 (5)0.0129 (5)0.0064 (4)0.0045 (4)−0.0003 (4)
O30.0198 (5)0.0188 (5)0.0097 (5)0.0005 (4)0.0025 (4)0.0007 (4)
N10.0155 (5)0.0164 (6)0.0118 (6)−0.0008 (4)0.0040 (4)0.0003 (5)
N20.0146 (5)0.0171 (6)0.0077 (5)0.0022 (4)0.0038 (4)−0.0003 (4)
C10.0152 (6)0.0168 (7)0.0136 (7)−0.0004 (5)0.0031 (5)0.0007 (5)
C20.0162 (6)0.0167 (7)0.0130 (7)0.0004 (5)0.0049 (5)−0.0013 (5)
C30.0148 (6)0.0139 (7)0.0117 (7)−0.0034 (5)0.0043 (5)−0.0001 (5)
C40.0145 (6)0.0133 (6)0.0119 (6)−0.0017 (5)0.0052 (5)0.0007 (5)
C50.0155 (6)0.0172 (7)0.0126 (7)−0.0006 (5)0.0030 (5)0.0026 (5)
C60.0156 (6)0.0181 (7)0.0215 (8)0.0023 (5)0.0062 (6)0.0019 (6)
C70.0204 (7)0.0160 (7)0.0204 (8)0.0000 (6)0.0111 (6)−0.0014 (6)
C80.0172 (6)0.0142 (6)0.0139 (7)−0.0040 (5)0.0064 (5)−0.0021 (5)
C90.0144 (6)0.0127 (6)0.0129 (7)−0.0025 (5)0.0052 (5)−0.0002 (5)
C100.0222 (7)0.0291 (8)0.0149 (7)0.0065 (6)0.0012 (6)−0.0028 (6)
C110.0207 (7)0.0223 (8)0.0156 (7)−0.0029 (6)0.0090 (6)−0.0037 (6)
C120.0135 (6)0.0155 (7)0.0105 (7)−0.0001 (5)0.0027 (5)−0.0003 (5)
C130.0140 (6)0.0148 (6)0.0093 (6)0.0000 (5)0.0028 (5)−0.0010 (5)
C140.0183 (6)0.0189 (7)0.0135 (7)0.0029 (5)0.0082 (5)−0.0010 (5)
C150.0205 (7)0.0251 (8)0.0199 (8)0.0012 (6)0.0112 (6)0.0025 (6)
C160.0173 (7)0.0222 (8)0.0201 (8)−0.0037 (6)0.0059 (6)0.0029 (6)
C170.0133 (6)0.0187 (7)0.0144 (7)−0.0003 (5)0.0032 (5)0.0014 (5)
C180.0155 (6)0.0131 (6)0.0109 (7)−0.0017 (5)0.0044 (5)−0.0012 (5)
C190.0181 (7)0.0172 (7)0.0179 (7)0.0052 (6)0.0037 (5)−0.0020 (6)
C200.0164 (6)0.0132 (7)0.0200 (8)0.0056 (5)0.0040 (5)−0.0013 (6)
C210.0261 (8)0.0201 (8)0.0214 (8)0.0027 (6)0.0080 (6)−0.0016 (6)
C220.0260 (8)0.0214 (8)0.0367 (10)−0.0043 (6)0.0140 (7)−0.0027 (7)
C230.0211 (7)0.0214 (8)0.0376 (10)−0.0011 (6)0.0031 (7)−0.0067 (7)
C240.0252 (8)0.0205 (8)0.0217 (8)0.0053 (6)−0.0017 (6)−0.0021 (6)
C250.0204 (7)0.0179 (7)0.0187 (8)0.0051 (6)0.0034 (6)0.0019 (6)
F1—C101.3284 (19)C8—C111.500 (2)
F2—C101.3289 (19)C12—C131.5500 (19)
F3—C101.339 (2)C12—H121.0000
F4—C111.3485 (17)C13—C171.5335 (18)
F5—C111.3407 (16)C13—H131.0000
F6—C111.3443 (18)C14—C151.529 (2)
O1—C121.4159 (17)C14—H14A0.9900
O1—H1O0.840 (9)C14—H14B0.9900
O2—C181.3570 (16)C15—C161.539 (2)
O2—C191.4600 (16)C15—H15A0.9900
O3—C181.2218 (17)C15—H15B0.9900
N1—C11.3176 (18)C16—C171.532 (2)
N1—C91.3615 (17)C16—H16A0.9900
N2—C181.3492 (17)C16—H16B0.9900
N2—C131.4733 (17)C17—H17A0.9900
N2—C141.4736 (16)C17—H17B0.9900
C1—C21.402 (2)C19—C201.508 (2)
C1—C101.508 (2)C19—H19A0.9900
C2—C31.3760 (19)C19—H19B0.9900
C2—H20.9500C20—C211.394 (2)
C3—C41.4250 (19)C20—C251.392 (2)
C3—C121.5100 (19)C21—C221.389 (2)
C4—C51.4223 (19)C21—H210.9500
C4—C91.4266 (19)C22—C231.386 (3)
C5—C61.363 (2)C22—H220.9500
C5—H50.9500C23—C241.383 (2)
C6—C71.413 (2)C23—H230.9500
C6—H60.9500C24—C251.389 (2)
C7—C81.367 (2)C24—H240.9500
C7—H70.9500C25—H250.9500
C8—C91.4288 (19)
C12—O1—H1O111.6 (13)N2—C13—H13108.1
C18—O2—C19115.08 (11)C17—C13—H13108.1
C1—N1—C9116.48 (12)C12—C13—H13108.1
C18—N2—C13122.22 (11)N2—C14—C15109.92 (11)
C18—N2—C14117.92 (11)N2—C14—H14A109.7
C13—N2—C14116.21 (11)C15—C14—H14A109.7
N1—C1—C2125.58 (13)N2—C14—H14B109.7
N1—C1—C10114.54 (12)C15—C14—H14B109.7
C2—C1—C10119.77 (12)H14A—C14—H14B108.2
C3—C2—C1118.75 (13)C14—C15—C16110.48 (11)
C3—C2—H2120.6C14—C15—H15A109.6
C1—C2—H2120.6C16—C15—H15A109.6
C2—C3—C4118.39 (12)C14—C15—H15B109.6
C2—C3—C12119.48 (12)C16—C15—H15B109.6
C4—C3—C12122.08 (12)H15A—C15—H15B108.1
C3—C4—C5123.78 (13)C17—C16—C15110.75 (12)
C3—C4—C9117.62 (12)C17—C16—H16A109.5
C5—C4—C9118.60 (12)C15—C16—H16A109.5
C6—C5—C4120.76 (13)C17—C16—H16B109.5
C6—C5—H5119.6C15—C16—H16B109.5
C4—C5—H5119.6H16A—C16—H16B108.1
C5—C6—C7120.77 (13)C16—C17—C13109.86 (11)
C5—C6—H6119.6C16—C17—H17A109.7
C7—C6—H6119.6C13—C17—H17A109.7
C8—C7—C6120.40 (13)C16—C17—H17B109.7
C8—C7—H7119.8C13—C17—H17B109.7
C6—C7—H7119.8H17A—C17—H17B108.2
C7—C8—C9120.34 (13)O3—C18—N2125.34 (12)
C7—C8—C11120.33 (13)O3—C18—O2122.70 (12)
C9—C8—C11119.31 (12)N2—C18—O2111.96 (11)
N1—C9—C4123.10 (12)O2—C19—C20112.88 (12)
N1—C9—C8117.80 (12)O2—C19—H19A109.0
C4—C9—C8119.10 (12)C20—C19—H19A109.0
F2—C10—F1107.32 (14)O2—C19—H19B109.0
F2—C10—F3106.66 (14)C20—C19—H19B109.0
F1—C10—F3106.61 (13)H19A—C19—H19B107.8
F2—C10—C1112.90 (13)C21—C20—C25119.02 (14)
F1—C10—C1112.91 (12)C21—C20—C19120.30 (14)
F3—C10—C1110.05 (13)C25—C20—C19120.68 (13)
F5—C11—F6106.16 (11)C22—C21—C20120.15 (15)
F5—C11—F4106.16 (12)C22—C21—H21119.9
F6—C11—F4106.48 (12)C20—C21—H21119.9
F5—C11—C8111.76 (12)C23—C22—C21120.35 (15)
F6—C11—C8113.08 (12)C23—C22—H22119.8
F4—C11—C8112.69 (11)C21—C22—H22119.8
O1—C12—C3107.77 (11)C24—C23—C22119.87 (15)
O1—C12—C13111.73 (11)C24—C23—H23120.1
C3—C12—C13109.35 (11)C22—C23—H23120.1
O1—C12—H12109.3C23—C24—C25119.97 (15)
C3—C12—H12109.3C23—C24—H24120.0
C13—C12—H12109.3C25—C24—H24120.0
N2—C13—C17109.02 (10)C24—C25—C20120.64 (14)
N2—C13—C12110.44 (11)C24—C25—H25119.7
C17—C13—C12113.07 (11)C20—C25—H25119.7
C9—N1—C1—C2−0.3 (2)C9—C8—C11—F4−63.18 (18)
C9—N1—C1—C10−176.49 (12)C2—C3—C12—O1−24.67 (16)
N1—C1—C2—C3−2.3 (2)C4—C3—C12—O1157.75 (12)
C10—C1—C2—C3173.71 (13)C2—C3—C12—C1396.96 (15)
C1—C2—C3—C42.6 (2)C4—C3—C12—C13−80.62 (15)
C1—C2—C3—C12−175.10 (12)C18—N2—C13—C17136.12 (13)
C2—C3—C4—C5178.88 (13)C14—N2—C13—C17−21.86 (16)
C12—C3—C4—C5−3.5 (2)C18—N2—C13—C12−99.08 (14)
C2—C3—C4—C9−0.51 (19)C14—N2—C13—C12102.94 (13)
C12—C3—C4—C9177.10 (12)O1—C12—C13—N2−67.05 (13)
C3—C4—C5—C6−177.76 (13)C3—C12—C13—N2173.73 (10)
C9—C4—C5—C61.6 (2)O1—C12—C13—C1755.41 (15)
C4—C5—C6—C7−0.7 (2)C3—C12—C13—C17−63.81 (14)
C5—C6—C7—C8−0.4 (2)C18—N2—C14—C15−94.29 (15)
C6—C7—C8—C90.6 (2)C13—N2—C14—C1564.67 (15)
C6—C7—C8—C11−178.42 (13)N2—C14—C15—C16−37.26 (16)
C1—N1—C9—C42.5 (2)C14—C15—C16—C17−23.02 (16)
C1—N1—C9—C8−177.60 (12)C15—C16—C17—C1365.54 (15)
C3—C4—C9—N1−2.2 (2)N2—C13—C17—C16−41.29 (15)
C5—C4—C9—N1178.41 (12)C12—C13—C17—C16−164.53 (12)
C3—C4—C9—C8177.97 (12)C13—N2—C18—O3−165.29 (13)
C5—C4—C9—C8−1.45 (19)C14—N2—C18—O3−7.7 (2)
C7—C8—C9—N1−179.50 (13)C13—N2—C18—O215.20 (18)
C11—C8—C9—N1−0.48 (19)C14—N2—C18—O2172.82 (11)
C7—C8—C9—C40.4 (2)C19—O2—C18—O37.38 (19)
C11—C8—C9—C4179.39 (12)C19—O2—C18—N2−173.10 (11)
N1—C1—C10—F2−38.11 (19)C18—O2—C19—C20−82.15 (15)
C2—C1—C10—F2145.43 (15)O2—C19—C20—C21−75.11 (16)
N1—C1—C10—F1−160.08 (13)O2—C19—C20—C25106.09 (15)
C2—C1—C10—F123.5 (2)C25—C20—C21—C220.9 (2)
N1—C1—C10—F380.93 (17)C19—C20—C21—C22−177.93 (14)
C2—C1—C10—F3−95.52 (16)C20—C21—C22—C23−0.2 (2)
C7—C8—C11—F5−3.62 (19)C21—C22—C23—C24−0.5 (2)
C9—C8—C11—F5177.36 (12)C22—C23—C24—C250.5 (2)
C7—C8—C11—F6−123.34 (14)C23—C24—C25—C200.2 (2)
C9—C8—C11—F657.64 (16)C21—C20—C25—C24−0.9 (2)
C7—C8—C11—F4115.84 (14)C19—C20—C25—C24177.91 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1o···O3i0.84 (1)1.90 (1)2.7294 (14)172.(2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯O3i0.84 (1)1.90 (1)2.7294 (14)172 (2)

Symmetry code: (i) .

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Authors:  Raoni S B Gonçalves; Carlos R Kaiser; Maria C S Lourenço; Marcus V N de Souza; James L Wardell; Solange M S V Wardell; Adilson D da Silva
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